Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Reverse (-)

17011424 .. 17014545

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCAAACTCTTGCTTCTTCTCATCTTCTTCAGTATCGCCGCCTCTTCTCTGACCACTTCCCCAAAACCCATTTGCAGAAATCTACAGTTCATAGACAAAACCTCACTCAATTAGGCTCTGCCTTTGTTTCCAGGGCTTCCGTTTCATCTAATGCTCACCCAATTGAGAGCTGTTTTAGGCAAAAAGGGGTCCCTAGAAAATCTTCTCTAGCTTTTCTCTCTCCTCTTGAAGCAATTCTATTTGATATTGATGGAACATTGTGTGATTCGGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAGTAGGTTTTAATGGTGGGGTTCCTATCACTGAGGAATTCTTCAGTGACAATTTAAGTGGAATGCATAATGAGAAACTTTGTAGTATCCTCTTTCCTGAGTGGGATATCCAAAGAGCAAGAAATTTTTTTGAAGATAAGGAAGCCATGTTTCGAAGATTGGCATCTGAACAATTAGAACCTGTTAAGGGCCTCCACAAGTTGCGCCAATGGATTGAAAATCAAGGCTTGAAACGGGCTGCAGTAACAAATGCTCCAAGACCAAATGGCGAGCTATTAATATCAACGGTGGAGCTCTCGAATTTTTTTGAAATTGTTGTTGTTGGAGATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAGGCTCTCCAAGCACTTCAGGTGTCACACAAGCATGCTTTCGCCTTTGAGGATTCTGTTTCAGGGGTGAAAGCGGGTGTAGCAGCTGGAATGCCAGTAGTGGCCTTAGGCACAAGGAATCCTGAGATATCATTGATTAATGCCGGAGCAGCCTTTGTTATTAAAGACTTTGAGGACCCAAAATTGTGGGAAGCACTGGAAGAGTTTGAGAGGAAGGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

301

Amino Acids

33.74

Weight (kDa)

6.08

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	277
AciI	CCGC	3 cut(s)	40, 275, 752
AclWI	GGATC	2 cut(s)	266, 279
AcsI	RAATTY	3 cut(s)	347, 433, 610
AcuI	CTGAAG	3 cut(s)	14, 337, 680
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	7 cut(s)	230, 308, 443, 527, 541, 620, 679
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	5 cut(s)	171, 212, 583, 604, 764
AluI	AGCT	5 cut(s)	171, 212, 583, 604, 764
Alw21I	GWGCWC	1 cut(s)	606
AlwI	GGATC	2 cut(s)	266, 279
AoxI	GGCC	2 cut(s)	499, 780
ApeKI	GCWGC	3 cut(s)	548, 761, 827
ApoI	RAATTY	3 cut(s)	347, 433, 610
AseI	ATTAAT	2 cut(s)	587, 816
Asp700I	GAANNNNTTC	3 cut(s)	202, 234, 303
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	3 cut(s)	190, 499, 853
AsuHPI	GGTGA	2 cut(s)	149, 757
AsuII	TTCGAA	1 cut(s)	463
AvaII	GGWCC	2 cut(s)	190, 853
AxyI	CCTNAGG	1 cut(s)	784
BamHI	GGATCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	535, 773, 839
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	407
BfaI	CTAG	2 cut(s)	195, 209
BfmI	CTRYAG	2 cut(s)	84, 549
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	4 cut(s)	40, 549, 762, 828
BlsI	GCNGC	4 cut(s)	41, 550, 763, 829
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	2 cut(s)	190, 853
BmgT120I	GGNCC	3 cut(s)	190, 499, 853
BmiI	GGNNCC	5 cut(s)	191, 192, 273, 333, 855
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	482
Bpu14I	TTCGAA	1 cut(s)	463
BsaBI	GATNNNNATC	2 cut(s)	270, 472
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	773, 879
Bse21I	CCTNAGG	1 cut(s)	784
Bse3DI	GCAATG	1 cut(s)	903
Bse8I	GATNNNNATC	2 cut(s)	270, 472
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	132
BseJI	GATNNNNATC	2 cut(s)	270, 472
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	3 cut(s)	333, 399, 792
BseNI	ACTGG	2 cut(s)	773, 879
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	535, 773, 839
BshFI	GGCC	2 cut(s)	501, 782
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	822
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	2 cut(s)	378, 774
BsnI	GGCC	2 cut(s)	501, 782
Bsp119I	TTCGAA	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	2 cut(s)	271, 646
BspACI	CCGC	3 cut(s)	40, 275, 752
BspANI	GGCC	2 cut(s)	501, 782
BspCNI	CTCAG	3 cut(s)	334, 400, 793
BspLI	GGNNCC	5 cut(s)	191, 192, 273, 333, 855
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	2 cut(s)	266, 279
BspT104I	TTCGAA	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	2 cut(s)	773, 879
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	271, 646
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	88, 598
Bst6I	CTCTTC	2 cut(s)	50, 873
BstBI	TTCGAA	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	581, 714
BstDEI	CTNAG	4 cut(s)	342, 408, 784, 801
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	2 cut(s)	274, 649
BstMBI	GATC	2 cut(s)	271, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	689, 758, 827
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	2 cut(s)	84, 549
BstV1I	GCAGC	3 cut(s)	535, 773, 839
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	864
BstYI	RGATCY	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	784
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	501, 782
BtsIMutI	CAGTG	3 cut(s)	339, 361, 872
Cac8I	GCNNGC	2 cut(s)	581, 714
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	3 cut(s)	190, 499, 853
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	2 cut(s)	457, 713
DdeI	CTNAG	4 cut(s)	342, 408, 784, 801
DpnI	GATC	2 cut(s)	273, 648
DpnII	GATC	2 cut(s)	271, 646
Eam1104I	CTCTTC	2 cut(s)	50, 873
EarI	CTCTTC	2 cut(s)	50, 873
Ecl136II	GAGCTC	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	606
Eco32I	GATATC	2 cut(s)	418, 807
Eco47I	GGWCC	2 cut(s)	190, 853
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	3 cut(s)	14, 337, 680
Eco81I	CCTNAGG	1 cut(s)	784
EcoICRI	GAGCTC	1 cut(s)	604
EcoO109I	RGGNCCY	3 cut(s)	190, 499, 853
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	131
EcoRV	GATATC	2 cut(s)	418, 807
EcoT22I	ATGCAT	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	606
FaeI	CATG	2 cut(s)	460, 716
FaiI	YATR	5 cut(s)	93, 288, 378, 458, 714
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	456, 712
FauI	CCCGC	1 cut(s)	745
Fnu4HI	GCNGC	4 cut(s)	40, 549, 762, 828
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	4 cut(s)	40, 549, 762, 828
FspBI	CTAG	2 cut(s)	195, 209
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	4 cut(s)	40, 549, 762, 828
HaeIII	GGCC	2 cut(s)	501, 782
HapII	CCGG	1 cut(s)	822
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	2 cut(s)	460, 716
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	3 cut(s)	266, 731, 796
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	2 cut(s)	149, 757
Hpy188I	TCNGA	3 cut(s)	52, 271, 478
Hpy188III	TCNNGA	6 cut(s)	227, 308, 407, 607, 665, 800
HpyAV	CCTTC	2 cut(s)	673, 886
HpyCH4III	ACNGT	2 cut(s)	88, 598
HpyCH4V	TGCA	4 cut(s)	4, 76, 376, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	689, 758, 827
HpyF3I	CTNAG	4 cut(s)	342, 408, 784, 801
Hsp92II	CATG	2 cut(s)	460, 716
HspAI	GCGC	1 cut(s)	514
KflI	GGGWCCC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	271, 646
LmnI	GCTCC	4 cut(s)	282, 568, 601, 824
Lsp1109I	GCAGC	3 cut(s)	535, 773, 839
LweI	GCATC	1 cut(s)	482
MaeI	CTAG	2 cut(s)	195, 209
MaeIII	GTNAC	3 cut(s)	356, 553, 702
MalI	GATC	2 cut(s)	273, 648
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	2 cut(s)	271, 646
MboII	GAAGA	9 cut(s)	9, 17, 20, 37, 195, 343, 455, 477, 890
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	9 cut(s)	53, 113, 234, 337, 410, 512, 721, 844, 882
Mph1103I	ATGCAT	1 cut(s)	378
MroXI	GAANNNNTTC	3 cut(s)	202, 234, 303
MseI	TTAA	6 cut(s)	321, 365, 495, 587, 816, 840
MslI	CAYNNNNRTG	2 cut(s)	285, 711
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	2 cut(s)	378, 774
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	3 cut(s)	689, 758, 827
NdeII	GATC	2 cut(s)	271, 646
NlaIII	CATG	2 cut(s)	460, 716
NlaIV	GGNNCC	5 cut(s)	191, 192, 273, 333, 855
NmuCI	GTSAC	2 cut(s)	356, 702
NsiI	ATGCAT	1 cut(s)	378
NspI	RCATGY	1 cut(s)	716
NspV	TTCGAA	1 cut(s)	463
PaeI	GCATGC	1 cut(s)	716
PctI	GAATGC	2 cut(s)	378, 774
PdmI	GAANNNNTTC	3 cut(s)	202, 234, 303
PfeI	GAWTC	3 cut(s)	266, 731, 796
PkrI	GCNGC	4 cut(s)	41, 550, 763, 829
PpuMI	RGGWCCY	2 cut(s)	190, 853
PshBI	ATTAAT	2 cut(s)	587, 816
Psp124BI	GAGCTC	1 cut(s)	606
Psp5II	RGGWCCY	2 cut(s)	190, 853
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	5 cut(s)	191, 192, 273, 333, 855
PspPI	GGNCC	3 cut(s)	190, 499, 853
PspPPI	RGGWCCY	2 cut(s)	190, 853
PstI	CTGCAG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	764
RseI	CAYNNNNRTG	2 cut(s)	285, 711
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	6 cut(s)	321, 365, 495, 587, 816, 840
SatI	GCNGC	4 cut(s)	40, 549, 762, 828
Sau3AI	GATC	2 cut(s)	271, 646
Sau96I	GGNCC	3 cut(s)	190, 499, 853
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	606
SetI	ASST	9 cut(s)	105, 173, 214, 319, 493, 585, 606, 702, 766
SfaNI	GCATC	1 cut(s)	482
SfcI	CTRYAG	2 cut(s)	84, 549
SfuI	TTCGAA	1 cut(s)	463
SinI	GGWCC	2 cut(s)	190, 853
SmiMI	CAYNNNNRTG	2 cut(s)	285, 711
SphI	GCATGC	1 cut(s)	716
SsiI	CCGC	3 cut(s)	40, 275, 752
SspMI	CTAG	2 cut(s)	195, 209
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	88, 598
TaqI	TCGA	3 cut(s)	463, 608, 649
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	266, 731, 796
Tru1I	TTAA	6 cut(s)	321, 365, 495, 587, 816, 840
Tru9I	TTAA	6 cut(s)	321, 365, 495, 587, 816, 840
TscAI	CASTG	3 cut(s)	346, 361, 879
TseFI	GTSAC	2 cut(s)	356, 702
TseI	GCWGC	3 cut(s)	548, 761, 827
Tsp45I	GTSAC	2 cut(s)	356, 702
TspDTI	ATGAA	3 cut(s)	80, 135, 654
TspGWI	ACGGA	2 cut(s)	130, 284
TspRI	CASTG	3 cut(s)	346, 361, 879
VpaK11BI	GGWCC	2 cut(s)	190, 853
VspI	ATTAAT	2 cut(s)	587, 816
XapI	RAATTY	3 cut(s)	347, 433, 610
XceI	RCATGY	1 cut(s)	716
XmnI	GAANNNNTTC	3 cut(s)	202, 234, 303
XspI	CTAG	2 cut(s)	195, 209
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.