Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004871

Physical Location & Seq

Genomic Coordinates Forward (+)

21300548 .. 21303261

Gene Structure 2714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG125700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCCATTTCATCAGACCCTCGCCCACTGGACAGTAAATGTTCTCTAGCATTTGTCGCTCCTCTCGAAGCAATTCTATTTGATATAGATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCCGTGAAATGCTTCAAGAAGTAGGTTTTAATGGTGGGGTTCCTATCACTGAGGAATTCTTCATTGAGAATATCAGTGGGATGCACAATGAGGAGCTCTGTGGTGTTCTCTTTCCTGATTGGGATCTCCAAAGAGCAAGAATTTTTTTTGAAGATAAGGAAGACATGTTCAGAAGATTGGCATCTGAACAGTTAGAACCTATGAAGGGTTTACGTAAGTTGCGGGAATGGATTGAAAATCAAAGCTTGAAACGGGCTGCAGTAACAAATGCACCAAGACCAAATGGCGAGCTATTAGTATCAGCACTGGACCTCCTGGGTTTCTTTGAAGTTCTTGTTATTGCAAATGAATGTGATCGAGCAAAACCATTTCCTGACCCTTACTTGAAAGCTCTCCAAGCACTTAATGTGTCAAATAAGCATGCTTTCGTCTTTGAGGATTCTGTCTCAGGAGTAAAAGCTGGAGTGGCAGCTGGAATGCCGGTGGTGGGTTTAGGCACAAGGAACCCTGACAGTTTACTGTTAGATGCTGGAGCCTCCTTTGTTATTAAAGATTTTGGTGACCCAAAATTGTGGGAAGCACTGGAAGAGTTGGAGAAGAAAGCAGTGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

248

Amino Acids

27.64

Weight (kDa)

4.71

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	23 - 202	7.7e-22	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	25 - 207	1.7e-26	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004871)

Species	Orthologous Gene IDs
malus_domestica	MD00G1123600.v1.1 MD00G1190500.v1.1 MD02G1226100.v1.1 MD02G1226200.v1.1 MD02G1226400.v1.1 MD07G1087800.v1.1
prunus_persica	Prupe.2G111900_v2.0.a1 Prupe.2G114400_v2.0.a1
pyrus_communis	pycom02g19470 pycom02g19500
rosa_chinensis	RchiOBHm_Chr1g0343701 RchiOBHm_Chr1g0343751 RchiOBHm_Chr1g0343881 RchiOBHm_Chr1g0360261
rosa_laevigata	RLG00000028950 RLG00000028952
rosa_multiflora	Rmu_sc0004270.1_g000007 Rmu_sc0007032.1_g000015 Rmu_ssc0000259.1_g000047
rosa_roxburghii	Rroxscaffold_4G00310310
rosa_rugosa	Rorug01G0168900 Rorug01G0169000
rosa_samantha	Rh1AG185100 Rh1AG185500 Rh1BG125700 Rh1BG152400 Rh1CG171300 Rh1DG184400 Rh6BG211900
rosa_wichuraiana	Rw1G015310 Rw1G015350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	115
AciI	CCGC	2 cut(s)	113, 352
AclWI	GGATC	2 cut(s)	104, 261
AcsI	RAATTY	2 cut(s)	185, 270
AfiI	CCNNNNNNNGG	2 cut(s)	335, 617
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	6 cut(s)	146, 281, 365, 379, 458, 517
AjnI	CCWGG	1 cut(s)	444
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	6 cut(s)	226, 375, 421, 521, 590, 602
AluI	AGCT	6 cut(s)	226, 375, 421, 521, 590, 602
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	2 cut(s)	104, 261
ApeKI	GCWGC	2 cut(s)	386, 599
ApoI	RAATTY	2 cut(s)	185, 270
Asp700I	GAANNNNTTC	2 cut(s)	72, 141
AspS9I	GGNCC	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	373, 611
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	2 cut(s)	387, 600
BlsI	GCNGC	2 cut(s)	388, 601
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	3 cut(s)	171, 635, 664
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	201, 320, 646
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	612, 681
BsaAI	YACGTR	1 cut(s)	344
BsaBI	GATNNNNATC	3 cut(s)	108, 252, 310
BsaJI	CCNNGG	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 617
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	3 cut(s)	33, 441, 717
Bse8I	GATNNNNATC	3 cut(s)	108, 252, 310
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	216
BseJI	GATNNNNATC	3 cut(s)	108, 252, 310
BseLI	CCNNNNNNNGG	2 cut(s)	335, 617
BseMII	CTCAG	2 cut(s)	171, 591
BseNI	ACTGG	3 cut(s)	33, 441, 717
BseRI	GAGGAG	2 cut(s)	51, 236
BseXI	GCAGC	2 cut(s)	373, 611
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	335, 617
BsmAI	GTCTC	1 cut(s)	580
BsmI	GAATGC	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	109, 253, 484
BspACI	CCGC	2 cut(s)	113, 352
BspCNI	CTCAG	2 cut(s)	172, 590
BspLI	GGNNCC	3 cut(s)	171, 635, 664
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	2 cut(s)	104, 261
BsrBI	CCGCTC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	610
BsrI	ACTGG	3 cut(s)	33, 441, 717
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	3 cut(s)	109, 253, 484
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	4 cut(s)	35, 321, 644, 651
Bst6I	CTCTTC	1 cut(s)	711
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	419, 552
BstDEI	CTNAG	2 cut(s)	180, 577
BstEII	GGTNACC	1 cut(s)	689
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	112, 256, 487
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	3 cut(s)	109, 253, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 527, 596
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	2 cut(s)	298, 554
BstPI	GGTNACC	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	387
BstSNI	TACGTA	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	373, 611
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	109, 253
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	2 cut(s)	109, 253
BtsCI	GGATG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	6 cut(s)	26, 177, 211, 434, 710, 741
Cac8I	GCNNGC	2 cut(s)	419, 552
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	439
CviAII	CATG	2 cut(s)	295, 551
CviJI	RGCY	8 cut(s)	226, 375, 386, 421, 521, 590, 602, 665
CviKI_1	RGCY	8 cut(s)	226, 375, 386, 421, 521, 590, 602, 665
DdeI	CTNAG	2 cut(s)	180, 577
DpnI	GATC	3 cut(s)	111, 255, 486
DpnII	GATC	3 cut(s)	109, 253, 484
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	226
Eco105I	TACGTA	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	689
EcoICRI	GAGCTC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	2 cut(s)	298, 554
FaiI	YATR	5 cut(s)	86, 126, 296, 332, 552
FatI	CATG	2 cut(s)	294, 550
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	387, 600
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	387, 600
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	2 cut(s)	387, 600
GsuI	CTGGAG	2 cut(s)	612, 681
HapII	CCGG	1 cut(s)	611
Hin1II	CATG	2 cut(s)	298, 554
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	2 cut(s)	104, 569
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	2 cut(s)	341, 647
Hpy188I	TCNGA	4 cut(s)	16, 109, 302, 316
Hpy188III	TCNNGA	5 cut(s)	65, 146, 245, 503, 579
Hpy8I	GTNNAC	2 cut(s)	341, 647
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	4 cut(s)	35, 321, 644, 651
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	214, 389, 401, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 527, 596
HpyF3I	CTNAG	2 cut(s)	180, 577
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	298, 554
Kzo9I	GATC	3 cut(s)	109, 253, 484
LmnI	GCTCC	4 cut(s)	64, 120, 223, 662
Lsp1109I	GCAGC	2 cut(s)	373, 611
LweI	GCATC	3 cut(s)	201, 320, 646
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	391, 689
MalI	GATC	3 cut(s)	111, 255, 486
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	3 cut(s)	109, 253, 484
MboII	GAAGA	6 cut(s)	181, 293, 302, 315, 728, 739
MflI	RGATCY	2 cut(s)	109, 253
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	4 cut(s)	72, 185, 270, 698
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	7 cut(s)	30, 72, 175, 214, 452, 559, 676
MroXI	GAANNNNTTC	2 cut(s)	72, 141
MseI	TTAA	3 cut(s)	159, 534, 678
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	3 cut(s)	56, 527, 596
NdeII	GATC	3 cut(s)	109, 253, 484
NlaIII	CATG	2 cut(s)	298, 554
NlaIV	GGNNCC	3 cut(s)	171, 635, 664
NmuCI	GTSAC	1 cut(s)	689
NspI	RCATGY	2 cut(s)	298, 554
PaeI	GCATGC	1 cut(s)	554
PciI	ACATGT	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	612
PdmI	GAANNNNTTC	2 cut(s)	72, 141
PfeI	GAWTC	2 cut(s)	104, 569
PkrI	GCNGC	2 cut(s)	388, 601
Ppu21I	YACGTR	1 cut(s)	344
PscI	ACATGT	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	3 cut(s)	171, 635, 664
PspPI	GGNCC	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	109, 253
PvuII	CAGCTG	1 cut(s)	602
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	159, 534, 678
SatI	GCNGC	2 cut(s)	387, 600
Sau3AI	GATC	3 cut(s)	109, 253, 484
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	3 cut(s)	201, 320, 646
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	123
SnaBI	TACGTA	1 cut(s)	344
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	4 cut(s)	72, 185, 270, 698
SsiI	CCGC	2 cut(s)	113, 352
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	4 cut(s)	35, 321, 644, 651
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	66, 487
TasI	AATT	4 cut(s)	72, 185, 270, 698
TfiI	GAWTC	2 cut(s)	104, 569
Tru1I	TTAA	3 cut(s)	159, 534, 678
Tru9I	TTAA	3 cut(s)	159, 534, 678
TscAI	CASTG	6 cut(s)	33, 184, 211, 441, 717, 741
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	2 cut(s)	386, 599
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	3 cut(s)	181, 347, 492
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	6 cut(s)	33, 184, 211, 441, 717, 741
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	2 cut(s)	185, 270
XceI	RCATGY	2 cut(s)	298, 554
XmnI	GAANNNNTTC	2 cut(s)	72, 141
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.