Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004137

Physical Location & Seq

Genomic Coordinates Reverse (-)

2345246 .. 2347441

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1028700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCGGTTATGAAAGTTGGGTTTTCGAATTGTGCTGCTGTTTTGCTGCTGACATTTTTGTTGAGCCTAGAAGCAGCTTTTGGAATCAGATTTGTGATTGACAGAGAAGAGTGCTTCTCTCATAATGTTCAATACGAAGGAGATACCGTCCACATTTCTTTCGTTGTTATTAAGGTTGATGCGTCGTGGCATCATACTCAAGACGGTGTTGATCTCATGGTGAAGGGGCCTTCCGGTGACAAGATTCATGATTTTCGTGACAAGACTACCGAGAAGTATGACTTTGTCGCTCATCACAAGGGAATCCATCAGTTTTGCTTCACTAACAAGTCTCCTTATCATGAAACCATAGATTTCGATATACATGTTAGCCATTTTACGTACTATGATCAACACGCAAAAGATGAGCACTTTAATCCGTTGTTAGAACAGGTATCAAAGTTAGAGGAGGCTCTTTATAACATTCAATTTGAGCAGCATTGGCTAGAGGCTCAGACCGAACGACAGGCAATAGCAAACGAAGCAATGGGCCGGAGGGCGATCCATAAGGTTTTCTTCGAATCAGCAGCCCTTGTTGGTGCCAGTCTTCTCCAAGTTTTCCTACTTCGCCGCCTTTTTGAACGGAAGCTTGGGATGACTAGAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AvrRpt-cleavage EMP24_GP25L

Protein Analysis

216

Amino Acids

24.9

Weight (kDa)

6.08

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	35 - 207	1.2e-33	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07680
fragaria_vesca	FvH4_3g42910 FvH4_3g42910 FvH4_3g42910 FvH4_6g40540 FvH4_6g40540
malus_domestica	MD03G1028700.v1.1 MD09G1128600.v1.1 MD17G1118000.v1.1
prunus_persica	Prupe.3G196600_v2.0.a1 Prupe.3G196600_v2.0.a1 Prupe.6G024700_v2.0.a1 Prupe.6G024700_v2.0.a1
pyrus_communis	pycom09g05220 pycom17g10850
rosa_chinensis	RchiOBHm_Chr2g0155801 RchiOBHm_Chr5g0076951
rosa_laevigata	RLG00000020865 RLG00000036636
rosa_multiflora	Rmu_sc0003417.1_g000010 Rmu_sc0007021.1_g000016 Rmu_sc0017500.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005200 Rroxscaffold_2G00093470
rosa_rugosa	Rorug05G0449700
rosa_samantha	Rh2AG516200 Rh2BG527100 Rh2CG501100 Rh2DG536100 Rh5AG504300 Rh5CG549900 Rh5DG538100
rosa_wichuraiana	Rw2G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	578
AciI	CCGC	1 cut(s)	610
AclWI	GGATC	1 cut(s)	535
AfaI	GTAC	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	131, 467, 620
AjuI	GAANNNNNNNTTGG	4 cut(s)	63, 95, 612, 644
AluBI	AGCT	2 cut(s)	77, 628
AluI	AGCT	2 cut(s)	77, 628
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	2 cut(s)	227, 529
ApeKI	GCWGC	5 cut(s)	35, 46, 74, 475, 566
AspS9I	GGNCC	2 cut(s)	227, 529
AsuHPI	GGTGA	2 cut(s)	232, 248
AsuII	TTCGAA	2 cut(s)	26, 558
BanI	GGYRCC	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	5 cut(s)	22, 33, 86, 487, 578
BccI	CCATC	1 cut(s)	315
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	3 cut(s)	68, 485, 639
BisI	GCNGC	6 cut(s)	36, 47, 75, 476, 567, 610
BlsI	GCNGC	6 cut(s)	37, 48, 76, 477, 568, 611
BmgT120I	GGNCC	2 cut(s)	227, 529
BmiI	GGNNCC	2 cut(s)	228, 580
BmsI	GCATC	2 cut(s)	169, 199
BoxI	GACNNNNGTC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	578
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu14I	TTCGAA	2 cut(s)	26, 558
BpuEI	CTTGAG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse1I	ACTGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	531
BseGI	GGATG	1 cut(s)	639
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	5 cut(s)	22, 33, 86, 487, 578
BshFI	GGCC	2 cut(s)	229, 531
BshNI	GGYRCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	234, 532
BsmAI	GTCTC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	229, 531
Bsp119I	TTCGAA	2 cut(s)	26, 558
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	211, 388, 540
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	2 cut(s)	229, 531
BspCNI	CTCAG	1 cut(s)	505
BspHI	TCATGA	2 cut(s)	247, 340
BspLI	GGNNCC	2 cut(s)	228, 580
BspPI	GGATC	1 cut(s)	535
BspT104I	TTCGAA	2 cut(s)	26, 558
BspT107I	GGYRCC	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	582
BssMI	GATC	3 cut(s)	211, 388, 540
Bst4CI	ACNGT	2 cut(s)	148, 206
Bst6I	CTCTTC	1 cut(s)	102
BstBAI	YACGTR	1 cut(s)	381
BstBI	TTCGAA	2 cut(s)	26, 558
BstDEI	CTNAG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	639
BstKTI	GATC	3 cut(s)	214, 391, 543
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	211, 388, 540
BstMWI	GCNNNNNNNGC	2 cut(s)	481, 521
BstNSI	RCATGY	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	641
BstSNI	TACGTA	1 cut(s)	381
BstV1I	GCAGC	5 cut(s)	22, 33, 86, 487, 578
BstV2I	GAAGAC	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	229, 531
BtsCI	GGATG	1 cut(s)	639
CciI	TCATGA	2 cut(s)	247, 340
Cfr13I	GGNCC	2 cut(s)	227, 529
CseI	GACGC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	4 cut(s)	217, 248, 341, 365
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	3 cut(s)	213, 390, 542
DpnII	GATC	3 cut(s)	211, 388, 540
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco105I	TACGTA	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	227
FaeI	CATG	4 cut(s)	220, 251, 344, 368
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 539, 571
FatI	CATG	4 cut(s)	216, 247, 340, 364
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	6 cut(s)	36, 47, 75, 476, 567, 610
Fsp4HI	GCNGC	6 cut(s)	36, 47, 75, 476, 567, 610
FspBI	CTAG	3 cut(s)	68, 485, 639
GluI	GCNGC	6 cut(s)	36, 47, 75, 476, 567, 610
HaeIII	GGCC	2 cut(s)	229, 531
HapII	CCGG	2 cut(s)	234, 532
HgaI	GACGC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	220, 251, 344, 368
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	5 cut(s)	84, 244, 303, 560, 642
HpaII	CCGG	2 cut(s)	234, 532
HphI	GGTGA	2 cut(s)	232, 248
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	89, 495
Hpy188III	TCNNGA	4 cut(s)	200, 248, 257, 341
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	131, 217, 240
HpyCH4III	ACNGT	2 cut(s)	148, 206
HpyCH4IV	ACGT	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	481, 521
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	4 cut(s)	220, 251, 344, 368
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	211, 388, 540
LpnPI	CCDG	5 cut(s)	247, 416, 491, 545, 595
Lsp1109I	GCAGC	5 cut(s)	22, 33, 86, 487, 578
LweI	GCATC	2 cut(s)	169, 199
MaeI	CTAG	3 cut(s)	68, 485, 639
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	236, 257
MalI	GATC	3 cut(s)	213, 390, 542
MboI	GATC	3 cut(s)	211, 388, 540
MboII	GAAGA	3 cut(s)	119, 547, 578
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	2 cut(s)	28, 467
MnlI	CCTC	4 cut(s)	439, 442, 481, 528
MseI	TTAA	2 cut(s)	171, 414
MspI	CCGG	2 cut(s)	234, 532
MwoI	GCNNNNNNNGC	2 cut(s)	481, 521
NdeII	GATC	3 cut(s)	211, 388, 540
NlaIII	CATG	4 cut(s)	220, 251, 344, 368
NlaIV	GGNNCC	2 cut(s)	228, 580
NmuCI	GTSAC	2 cut(s)	236, 257
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	2 cut(s)	26, 558
PagI	TCATGA	2 cut(s)	247, 340
PciI	ACATGT	1 cut(s)	364
PfeI	GAWTC	4 cut(s)	84, 244, 303, 560
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	6 cut(s)	37, 48, 76, 477, 568, 611
Ppu21I	YACGTR	1 cut(s)	381
PscI	ACATGT	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	641
PsiI	TTATAA	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	228, 580
PspPI	GGNCC	2 cut(s)	227, 529
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	171, 414
SatI	GCNGC	6 cut(s)	36, 47, 75, 476, 567, 610
Sau3AI	GATC	3 cut(s)	211, 388, 540
Sau96I	GGNCC	2 cut(s)	227, 529
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	6 cut(s)	79, 177, 383, 435, 552, 630
SfaNI	GCATC	2 cut(s)	169, 199
SfuI	TTCGAA	2 cut(s)	26, 558
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
SnaBI	TACGTA	1 cut(s)	381
Sse9I	AATT	2 cut(s)	28, 467
SsiI	CCGC	1 cut(s)	610
SspMI	CTAG	3 cut(s)	68, 485, 639
TaaI	ACNGT	2 cut(s)	148, 206
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	26, 357, 558
TaqII	GACCGA	1 cut(s)	512
TasI	AATT	2 cut(s)	28, 467
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	4 cut(s)	84, 244, 303, 560
Tru1I	TTAA	2 cut(s)	171, 414
Tru9I	TTAA	2 cut(s)	171, 414
TseFI	GTSAC	2 cut(s)	236, 257
TseI	GCWGC	5 cut(s)	35, 46, 74, 475, 566
Tsp45I	GTSAC	2 cut(s)	236, 257
TspDTI	ATGAA	3 cut(s)	26, 236, 357
TspGWI	ACGGA	2 cut(s)	408, 637
Tth111I	GACNNNGTC	1 cut(s)	284
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	3 cut(s)	68, 485, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.