Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004137

Physical Location & Seq

Genomic Coordinates Reverse (-)

3887291 .. 3888615

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGAGACACCATCCATGTCTCTTTTGTGGTAATCAAGGTAGATTCGACTTGGCATTACACCGAAGACGGCGTTGATCTCGTGATAAAGGGACCTGGTGGTGAACAAATTCATGACATACGCGGCAAGACAAGCGAGAAGTATGAGTTTGTGGTTCAGAAGCAAGGTGTTCACCAGTTCTGCTTCACGAACAAGTCTCCTTACCACGAAACCGTTGACTTTGATGTACATGCTGCTCACTTCACATACTATGACCAGCATGCTAAAGACGAGCATTTCACGCCCTTGCTGGAGCAGATTCAAAAGTTGGAGGAAGCCCTCTATAACATCCAATTCGAACAACATTGGTTAGAAGCTGAGACTGACCGCCAAGCAATAGTGAATGAAGGAATGAGCCGCAGAGCAACGCACAAGGCATTGATAGAATCGGCAGCGCTTATTGGAGCTAGCTGCCTCCAAGTTTTTCTTCTGAAACGTTTGTTTGAACGCAAGCTTGGATCTTCTAGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

171

Amino Acids

19.59

Weight (kDa)

5.85

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07680
fragaria_vesca	FvH4_3g42910 FvH4_3g42910 FvH4_3g42910 FvH4_6g40540 FvH4_6g40540
malus_domestica	MD03G1028700.v1.1 MD09G1128600.v1.1 MD17G1118000.v1.1
prunus_persica	Prupe.3G196600_v2.0.a1 Prupe.3G196600_v2.0.a1 Prupe.6G024700_v2.0.a1 Prupe.6G024700_v2.0.a1
pyrus_communis	pycom09g05220 pycom17g10850
rosa_chinensis	RchiOBHm_Chr2g0155801 RchiOBHm_Chr5g0076951
rosa_laevigata	RLG00000020865 RLG00000036636
rosa_multiflora	Rmu_sc0003417.1_g000010 Rmu_sc0007021.1_g000016 Rmu_sc0017500.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005200 Rroxscaffold_2G00093470
rosa_rugosa	Rorug05G0449700
rosa_samantha	Rh2AG516200 Rh2BG527100 Rh2CG501100 Rh2DG536100 Rh5AG504300 Rh5CG549900 Rh5DG538100
rosa_wichuraiana	Rw2G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	3 cut(s)	123, 367, 397
AclI	AACGTT	1 cut(s)	475
AclWI	GGATC	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	108
AfaI	GTAC	1 cut(s)	228
AfeI	AGCGCT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	302, 485
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	4 cut(s)	450, 477, 482, 509
AluBI	AGCT	4 cut(s)	356, 446, 450, 493
AluI	AGCT	4 cut(s)	356, 446, 450, 493
Alw26I	GTCTC	3 cut(s)	25, 201, 353
AlwI	GGATC	1 cut(s)	505
Aor51HI	AGCGCT	1 cut(s)	435
ApeKI	GCWGC	3 cut(s)	233, 431, 450
ApoI	RAATTY	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	113, 164
AsuII	TTCGAA	1 cut(s)	336
AsuNHI	GCTAGC	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	220, 437, 443
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	3 cut(s)	25, 201, 353
BfaI	CTAG	2 cut(s)	447, 504
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	5 cut(s)	124, 234, 397, 432, 451
BlsI	GCNGC	5 cut(s)	125, 235, 398, 433, 452
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	96
BmtI	GCTAGC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	12, 327
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	220, 437, 443
Bsh1236I	CGCG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	3 cut(s)	25, 201, 353
BsmFI	GGGAC	1 cut(s)	105
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	76, 497
BspACI	CCGC	3 cut(s)	123, 367, 397
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	93
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	1 cut(s)	505
BspT104I	TTCGAA	1 cut(s)	336
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	76, 497
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	214
BstAUI	TGTACA	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	261, 448, 491
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	12, 327
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	2 cut(s)	79, 500
BstMAI	GTCTC	3 cut(s)	25, 201, 353
BstMBI	GATC	2 cut(s)	76, 497
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 280
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	2 cut(s)	233, 263
BstSCI	CCNGG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	220, 437, 443
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	12, 327
Cac8I	GCNNGC	3 cut(s)	261, 448, 491
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	92
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	4 cut(s)	17, 113, 230, 260
CviJI	RGCY	6 cut(s)	317, 356, 396, 446, 450, 493
CviKI_1	RGCY	6 cut(s)	317, 356, 396, 446, 450, 493
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	78, 499
DpnII	GATC	2 cut(s)	76, 497
Eco47I	GGWCC	1 cut(s)	92
Eco47III	AGCGCT	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	94
FaeI	CATG	4 cut(s)	20, 116, 233, 263
FaiI	YATR	9 cut(s)	18, 114, 119, 144, 231, 247, 252, 261, 324
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	4 cut(s)	16, 112, 229, 259
Fnu4HI	GCNGC	5 cut(s)	124, 234, 397, 432, 451
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	5 cut(s)	124, 234, 397, 432, 451
FspBI	CTAG	2 cut(s)	447, 504
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	5 cut(s)	124, 234, 397, 432, 451
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	437
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	4 cut(s)	20, 116, 233, 263
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	3 cut(s)	44, 298, 425
HphI	GGTGA	2 cut(s)	113, 164
Hpy166II	GTNNAC	3 cut(s)	104, 172, 217
Hpy188I	TCNGA	2 cut(s)	159, 471
Hpy188III	TCNNGA	4 cut(s)	82, 113, 187, 504
Hpy8I	GTNNAC	3 cut(s)	104, 172, 217
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 280
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	4 cut(s)	20, 116, 233, 263
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	2 cut(s)	76, 497
LmnI	GCTCC	2 cut(s)	292, 443
LpnPI	CCDG	5 cut(s)	81, 108, 188, 269, 275
Lsp1109I	GCAGC	3 cut(s)	220, 437, 443
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	2 cut(s)	447, 504
MaeII	ACGT	1 cut(s)	475
MalI	GATC	2 cut(s)	78, 499
MboI	GATC	2 cut(s)	76, 497
MboII	GAAGA	3 cut(s)	77, 458, 492
MflI	RGATCY	1 cut(s)	497
MluCI	AATT	2 cut(s)	108, 332
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	3 cut(s)	304, 329, 464
MroXI	GAANNNNTTC	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	132, 280
NdeII	GATC	2 cut(s)	76, 497
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	4 cut(s)	20, 116, 233, 263
NlaIV	GGNNCC	1 cut(s)	93
NspI	RCATGY	2 cut(s)	233, 263
NspV	TTCGAA	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	263
PagI	TCATGA	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	44, 298, 425
PkrI	GCNGC	5 cut(s)	125, 235, 398, 433, 452
PpuMI	RGGWCCY	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	92
PspPPI	RGGWCCY	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SatI	GCNGC	5 cut(s)	124, 234, 397, 432, 451
Sau3AI	GATC	2 cut(s)	76, 497
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	8 cut(s)	42, 97, 169, 358, 448, 452, 478, 495
SexAI	ACCWGGT	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	1 cut(s)	92
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	2 cut(s)	108, 332
SsiI	CCGC	3 cut(s)	123, 367, 397
SspMI	CTAG	2 cut(s)	447, 504
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	47, 336
TasI	AATT	2 cut(s)	108, 332
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	2 cut(s)	126, 399
TfiI	GAWTC	3 cut(s)	44, 298, 425
TseI	GCWGC	3 cut(s)	233, 431, 450
TspDTI	ATGAA	2 cut(s)	101, 399
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	108
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	2 cut(s)	233, 263
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	447, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.