Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004137

Physical Location & Seq

Genomic Coordinates Reverse (-)

1984407 .. 1986778

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G024700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAAGTTGGGTTTTCAAATTGTGCTGCTGTTTTGCTGCTGACATTTTTGGTGAGCCTACAAGCAGTTTTTGGGATCAGATTTGTGATTGACAGAGAAGAATGCTTCTCTCATAATGTTCAATATGAAGGAGATACTGTCCACATCTCTTTTGTTGTAATTAAGGTGGATGCATCTTGGCATTATACTCAAGACGGTGTTGACCTCGTGGTGAAGGGACCTTCTGGTGAGCAGATTCACGATTTTCGTGACAAGACAAGTGAGAAGTTTGATTTTGTCACTCGTCACAAAGGAGTCCATCAGTTCTGCTTCACCAACAAGTCGCCTTATCATGAAACCATAGACTTTGATATACACGTTAGCCATTTTACATACTATGATCAACATGCAAAAGATGAGCATTTTAACCCATTGTTAGAGCAGGTATCAAAGTTAGAGGAAGCTCTTTACAACATTCAGTTTGAGCAGCATTGGCTCGAGGCTCAGACCGAACGCCAGGCAATAGTAAACGAAGCAATGAGCCGGAGGGCGATCCACAAGGCCTTCTTTGAATCAGCAGCACTTGTTGGTGCCAGCGCTCTCCAAGTTTACCTTCTTCGCCGCCTCTTTGAACGAAAGCTTGGGGTGACCAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AvrRpt-cleavage EMP24_GP25L

Protein Analysis

213

Amino Acids

24.58

Weight (kDa)

6.09

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07680
fragaria_vesca	FvH4_3g42910 FvH4_3g42910 FvH4_3g42910 FvH4_6g40540 FvH4_6g40540
malus_domestica	MD03G1028700.v1.1 MD09G1128600.v1.1 MD17G1118000.v1.1
prunus_persica	Prupe.3G196600_v2.0.a1 Prupe.3G196600_v2.0.a1 Prupe.6G024700_v2.0.a1 Prupe.6G024700_v2.0.a1
pyrus_communis	pycom09g05220 pycom17g10850
rosa_chinensis	RchiOBHm_Chr2g0155801 RchiOBHm_Chr5g0076951
rosa_laevigata	RLG00000020865 RLG00000036636
rosa_multiflora	Rmu_sc0003417.1_g000010 Rmu_sc0007021.1_g000016 Rmu_sc0017500.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005200 Rroxscaffold_2G00093470
rosa_rugosa	Rorug05G0449700
rosa_samantha	Rh2AG516200 Rh2BG527100 Rh2CG501100 Rh2DG536100 Rh5AG504300 Rh5CG549900 Rh5DG538100
rosa_wichuraiana	Rw2G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	569
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	2 cut(s)	83, 526
AfeI	AGCGCT	1 cut(s)	577
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	4 cut(s)	18, 122, 551, 611
AjnI	CCWGG	1 cut(s)	495
AjuI	GAANNNNNNNTTGG	4 cut(s)	576, 603, 608, 635
AluBI	AGCT	2 cut(s)	443, 619
AluI	AGCT	2 cut(s)	443, 619
AlwI	GGATC	2 cut(s)	83, 526
AlwNI	CAGNNNCTG	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	476
Aor51HI	AGCGCT	1 cut(s)	577
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	4 cut(s)	26, 37, 466, 557
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	5 cut(s)	64, 223, 239, 304, 637
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	569
BauI	CACGAG	1 cut(s)	206
BbvI	GCAGC	4 cut(s)	13, 24, 478, 569
BccI	CCATC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	497
BclI	TGATCA	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	5 cut(s)	27, 38, 467, 558, 601
BlsI	GCNGC	5 cut(s)	28, 39, 468, 559, 602
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	219, 571
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	160, 182
BoxI	GACNNNNGTC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	13, 24, 478, 569
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	476
Bsp143I	GATC	3 cut(s)	75, 379, 531
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	219, 571
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	83, 526
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	522
BssMI	GATC	3 cut(s)	75, 379, 531
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	139, 197
BstC8I	GCNNGC	1 cut(s)	574
BstDEI	CTNAG	1 cut(s)	483
BstEII	GGTNACC	1 cut(s)	625
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	579
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	3 cut(s)	78, 382, 534
BstMBI	GATC	3 cut(s)	75, 379, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	389
BstPAI	GACNNNNGTC	1 cut(s)	632
BstPI	GGTNACC	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	495
BstV1I	GCAGC	4 cut(s)	13, 24, 478, 569
BsuRI	GGCC	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	574
CaiI	CAGNNNCTG	1 cut(s)	636
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	218
CviAII	CATG	2 cut(s)	332, 386
CviJI	RGCY	8 cut(s)	57, 363, 443, 475, 482, 522, 542, 619
CviKI_1	RGCY	8 cut(s)	57, 363, 443, 475, 482, 522, 542, 619
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	77, 381, 533
DpnII	GATC	3 cut(s)	75, 379, 531
Eco147I	AGGCCT	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	218
Eco47III	AGCGCT	1 cut(s)	577
Eco88I	CYCGRG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	175
FaeI	CATG	2 cut(s)	335, 389
FaiI	YATR	9 cut(s)	114, 126, 186, 333, 341, 353, 373, 378, 387
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 576, 608
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	331, 385
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	5 cut(s)	27, 38, 467, 558, 601
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	5 cut(s)	27, 38, 467, 558, 601
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	5 cut(s)	27, 38, 467, 558, 601
HaeII	RGCGCY	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	1 cut(s)	578
Hin1II	CATG	2 cut(s)	335, 389
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	4 cut(s)	235, 294, 551, 633
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	5 cut(s)	64, 223, 239, 304, 637
Hpy166II	GTNNAC	4 cut(s)	142, 202, 508, 589
Hpy188I	TCNGA	3 cut(s)	80, 486, 638
Hpy188III	TCNNGA	4 cut(s)	191, 239, 248, 332
Hpy8I	GTNNAC	4 cut(s)	142, 202, 508, 589
HpyAV	CCTTC	5 cut(s)	122, 208, 231, 553, 602
HpyCH4III	ACNGT	2 cut(s)	139, 197
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	173, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	335, 389
HspAI	GCGC	1 cut(s)	576
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	75, 379, 531
LpnPI	CCDG	6 cut(s)	210, 407, 482, 509, 536, 586
Lsp1109I	GCAGC	4 cut(s)	13, 24, 478, 569
LweI	GCATC	2 cut(s)	160, 182
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	4 cut(s)	248, 277, 284, 625
MalI	GATC	3 cut(s)	77, 381, 533
MboI	GATC	3 cut(s)	75, 379, 531
MboII	GAAGA	2 cut(s)	110, 587
MluCI	AATT	2 cut(s)	19, 159
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	5 cut(s)	215, 430, 472, 519, 614
Mph1103I	ATGCAT	1 cut(s)	175
MseI	TTAA	2 cut(s)	162, 405
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	472
NdeII	GATC	3 cut(s)	75, 379, 531
NlaIII	CATG	2 cut(s)	335, 389
NlaIV	GGNNCC	2 cut(s)	219, 571
NmuCI	GTSAC	4 cut(s)	248, 277, 284, 625
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	476
PagI	TCATGA	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	542
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	235, 551
PkrI	GCNGC	5 cut(s)	28, 39, 468, 559, 602
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	218
PshAI	GACNNNNGTC	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	495
PspEI	GGTNACC	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	219, 571
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
PspXI	VCTCGAGB	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	162, 405
SatI	GCNGC	5 cut(s)	27, 38, 467, 558, 601
Sau3AI	GATC	3 cut(s)	75, 379, 531
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	497
SetI	ASST	8 cut(s)	168, 207, 223, 360, 426, 445, 594, 621
SfaNI	GCATC	2 cut(s)	160, 182
Sfr274I	CTCGAG	1 cut(s)	476
SinI	GGWCC	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	189, 476
SmoI	CTYRAG	2 cut(s)	189, 476
Sse9I	AATT	2 cut(s)	19, 159
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	1 cut(s)	601
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	139, 197
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	477
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	2 cut(s)	19, 159
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	2 cut(s)	235, 551
Tru1I	TTAA	2 cut(s)	162, 405
Tru9I	TTAA	2 cut(s)	162, 405
TseFI	GTSAC	4 cut(s)	248, 277, 284, 625
TseI	GCWGC	4 cut(s)	26, 37, 466, 557
Tsp45I	GTSAC	4 cut(s)	248, 277, 284, 625
TspDTI	ATGAA	3 cut(s)	17, 141, 348
VpaK11BI	GGWCC	1 cut(s)	218
XceI	RCATGY	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.