Rh2BG527100

Transmembrane emp24 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004137
Physical Location & Seq
Forward (+)
73692664 .. 73695270
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG527100.1

Sequence Viewer

Length: 1098 bp
ATGGTAGAGACGGTGGTCATTCCACCGCGAGGCGACAATTGGGTTGACATTGAGGGCTCATCCTCGACACTGTCGCCGAAGCTGGTGTGCACCTTCAGGAACTATTGGACGCCATTTAAGAGGTGGAAATTGGGACAGGTGTCGTGGACAGCTAGGGCAACGCTATCACCGAACAGGACTATAGGGGAATACGGCGATGTGTGTATCAATGGGTCAGACTTGAAACAAATTTGGACATTATTGCGTCTGTTTGCAGTTGTCACCAAGCTTATGACGGTATCAATGGCTGTGGTGCAATTGAATGTCGTCGGTCCGGCCTCTGGGTTCAAAGTGTGGGCATCTCCTTTCGGGGTGTCCATAGCAAAATGGAGTCTATGGTTTTTGGGGTTTGGCAAAGTCAACACCCATTATCAATTACACCGTACCCTTTTTGCTTCTCTCTCCAATTTTGATTGTTTCACAGAGAAGATGGAGCTGCTGGGATTGTTAATGATGGGTTTTGTGGTCTTGTGCCAAATGAAAGGCTCCGTTGGGTTGAGGTTCGTGATAGATAGAGAAGAGTGCTTCTCTCATGAGGCAAAGTATGAGGGTGACACTGTTCATGTCTCTTTTGTCGTGATCAAAATCGATTCGACTTGGCATTACACTCAAGAAGGAGTTGATCTTGTGGTAAAGGGGCCTTCTGGTGAACAACTTCATGACATACGTGACAAGACGAGTGAGAAGTTTGAATTTGTGGTTCAGAAGGCAGGTGTTCATCACTTCTGCTTCACTAACAAATCTCCTTACCATGAAACCATTGATTTTGATGTACATTCTGCGCACTTCACATACTATGACGAGCATGCCAAAGATGAGCATTTCAAACCCTTGTTTGAGCAGATTCAAAAGTTGGAGGAAGCCATTTTCAATATCCAATTTGAACAACACTGGCTAGAGGCTGAGACTGACCGCCAGGCAATATTGAATGAAGGAATGAGTCAGAGGGCAACTCACAAGGCAATGTTTGAATCAGCTGCACTTATTGGAACCAGCCTCCTCCAAGTTTTTCTTTTGAAACGTTTGTTTGAGCGCAAGCTTGGGTCATCTAGAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EMP24_GP25L

Protein Analysis

365

Amino Acids

41.78

Weight (kDa)

6.57

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP24_GP25L PF01105 185 - 357 5.2e-33 emp24/gp25L/p24 family/GOLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 740
Acc16I TGCGCA 1 cut(s) 822
Acc36I ACCTGC 1 cut(s) 740
AccII CGCG 1 cut(s) 28
AciI CCGC 2 cut(s) 26, 952
AclI AACGTT 1 cut(s) 1060
AcsI RAATTY 2 cut(s) 228, 731
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 2 cut(s) 424, 813
AfiI CCNNNNNNNGG 2 cut(s) 29, 320
AjnI CCWGG 1 cut(s) 954
AluBI AGCT 6 cut(s) 82, 152, 268, 475, 1016, 1078
AluI AGCT 6 cut(s) 82, 152, 268, 475, 1016, 1078
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 3 cut(s) 2, 610, 938
Alw44I GTGCAC 1 cut(s) 88
AoxI GGCC 2 cut(s) 315, 677
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 475, 1016
ApoI RAATTY 2 cut(s) 228, 731
Asp700I GAANNNNTTC 1 cut(s) 693
AspLEI GCGC 2 cut(s) 823, 1074
AspS9I GGNCC 2 cut(s) 311, 677
AsuHPI GGTGA 4 cut(s) 159, 253, 602, 698
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 462, 1003
BccI CCATC 2 cut(s) 463, 487
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 956
BclI TGATCA 1 cut(s) 618
BcoDI GTCTC 3 cut(s) 2, 610, 938
BfaI CTAG 4 cut(s) 153, 935, 1089, 1096
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 740
BisI GCNGC 2 cut(s) 476, 1017
BlsI GCNGC 2 cut(s) 477, 1018
Bme1390I CCNGG 1 cut(s) 956
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 311, 677
BmiI GGNNCC 3 cut(s) 526, 678, 1030
BmrFI CCNGG 1 cut(s) 956
BmsI GCATC 1 cut(s) 347
BoxI GACNNNNGTC 2 cut(s) 14, 139
BplI GAGNNNNNCTC 4 cut(s) 551, 583, 976, 1008
BpuEI CTTGAG 1 cut(s) 633
Bsa29I ATCGAT 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 707
BsaBI GATNNNNATC 1 cut(s) 623
BsaHI GRCGYC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 320
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 1 cut(s) 1008
Bse8I GATNNNNATC 1 cut(s) 623
BseBI CCWGG 1 cut(s) 956
BseCI ATCGAT 1 cut(s) 627
BseGI GGATG 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 623
BseLI CCNNNNNNNGG 2 cut(s) 29, 320
BseMI GCAATG 1 cut(s) 1008
BseMII CTCAG 1 cut(s) 933
BseNI ACTGG 1 cut(s) 935
BseRI GAGGAG 1 cut(s) 1028
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 2 cut(s) 462, 1003
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 317, 679
BshVI ATCGAT 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 2 cut(s) 29, 320
BsmAI GTCTC 3 cut(s) 2, 610, 938
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 2 cut(s) 317, 679
Bsp1286I GDGCHC 2 cut(s) 59, 92
Bsp1407I TGTACA 1 cut(s) 811
Bsp143I GATC 2 cut(s) 618, 661
BspACI CCGC 2 cut(s) 26, 952
BspANI GGCC 2 cut(s) 317, 679
BspCNI CTCAG 1 cut(s) 934
BspDI ATCGAT 1 cut(s) 627
BspFNI CGCG 1 cut(s) 28
BspHI TCATGA 2 cut(s) 571, 697
BspLI GGNNCC 3 cut(s) 526, 678, 1030
BspMI ACCTGC 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 1008
BsrGI TGTACA 1 cut(s) 811
BsrI ACTGG 1 cut(s) 935
BssMI GATC 2 cut(s) 618, 661
BssNI GRCGYC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 956
Bst4CI ACNGT 5 cut(s) 13, 72, 277, 422, 598
Bst6I CTCTTC 1 cut(s) 552
BstACI GRCGYC 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 811
BstBAI YACGTR 1 cut(s) 707
BstC8I GCNNGC 2 cut(s) 846, 1076
BstDEI CTNAG 1 cut(s) 942
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 2 cut(s) 823, 1074
BstKTI GATC 2 cut(s) 621, 664
BstMAI GTCTC 3 cut(s) 2, 610, 938
BstMBI GATC 2 cut(s) 618, 661
BstNI CCWGG 1 cut(s) 956
BstNSI RCATGY 1 cut(s) 848
BstPAI GACNNNNGTC 2 cut(s) 14, 139
BstSCI CCNGG 1 cut(s) 954
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 462, 1003
Bsu15I ATCGAT 1 cut(s) 627
BsuRI GGCC 2 cut(s) 317, 679
BsuTUI ATCGAT 1 cut(s) 627
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 3 cut(s) 68, 594, 928
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 846, 1076
CciI TCATGA 2 cut(s) 571, 697
CfoI GCGC 2 cut(s) 823, 1074
Cfr13I GGNCC 2 cut(s) 311, 677
ClaI ATCGAT 1 cut(s) 627
CpoI CGGWCCG 1 cut(s) 311
CseI GACGC 2 cut(s) 118, 233
Csp6I GTAC 2 cut(s) 423, 812
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CspI CGGWCCG 1 cut(s) 311
CviAII CATG 5 cut(s) 572, 602, 698, 791, 845
CviQI GTAC 2 cut(s) 423, 812
DdeI CTNAG 1 cut(s) 942
DpnI GATC 2 cut(s) 620, 663
DpnII GATC 2 cut(s) 618, 661
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 954
EcoT38I GRGCYC 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 5 cut(s) 575, 605, 701, 794, 848
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 147
FatI CATG 5 cut(s) 571, 601, 697, 790, 844
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 2 cut(s) 476, 1017
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 476, 1017
FspBI CTAG 4 cut(s) 153, 935, 1089, 1096
FspI TGCGCA 1 cut(s) 822
GlaI GCGC 2 cut(s) 822, 1073
GluI GCNGC 2 cut(s) 476, 1017
GsaI CCCAGC 1 cut(s) 482
HaeIII GGCC 2 cut(s) 317, 679
HapII CCGG 1 cut(s) 314
HgaI GACGC 2 cut(s) 118, 233
HhaI GCGC 2 cut(s) 823, 1074
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 5 cut(s) 575, 605, 701, 794, 848
Hin6I GCGC 2 cut(s) 821, 1072
HinP1I GCGC 2 cut(s) 821, 1072
HincII GTYRAC 2 cut(s) 46, 400
HindII GTYRAC 2 cut(s) 46, 400
HindIII AAGCTT 2 cut(s) 266, 1076
HinfI GANTC 6 cut(s) 370, 629, 883, 979, 1010, 1092
HpaII CCGG 1 cut(s) 314
HphI GGTGA 4 cut(s) 159, 253, 602, 698
Hpy166II GTNNAC 5 cut(s) 46, 90, 147, 400, 689
Hpy188I TCNGA 3 cut(s) 217, 744, 984
Hpy188III TCNNGA 7 cut(s) 97, 544, 572, 616, 650, 698, 1089
Hpy8I GTNNAC 5 cut(s) 46, 90, 147, 400, 689
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 5 cut(s) 103, 647, 690, 739, 965
HpyCH4III ACNGT 5 cut(s) 13, 72, 277, 422, 598
HpyCH4IV ACGT 2 cut(s) 706, 1060
HpyCH4V TGCA 4 cut(s) 90, 254, 295, 1019
HpyF3I CTNAG 1 cut(s) 942
HpySE526I ACGT 2 cut(s) 706, 1060
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 5 cut(s) 575, 605, 701, 794, 848
HspAI GCGC 2 cut(s) 821, 1072
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 2 cut(s) 618, 661
LmnI GCTCC 2 cut(s) 472, 530
Lsp1109I GCAGC 2 cut(s) 462, 1003
LweI GCATC 1 cut(s) 347
MaeI CTAG 4 cut(s) 153, 935, 1089, 1096
MaeII ACGT 2 cut(s) 706, 1060
MaeIII GTNAC 3 cut(s) 259, 590, 707
MalI GATC 2 cut(s) 620, 663
MboI GATC 2 cut(s) 618, 661
MboII GAAGA 2 cut(s) 478, 569
MfeI CAATTG 2 cut(s) 37, 296
MhlI GDGCHC 2 cut(s) 59, 92
MluCI AATT 8 cut(s) 37, 128, 228, 296, 413, 445, 731, 917
MlyI GAGTC 2 cut(s) 379, 988
MmeI TCCRAC 1 cut(s) 873
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 2 cut(s) 117, 488
MspA1I CMGCKG 1 cut(s) 1016
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 956
MunI CAATTG 2 cut(s) 37, 296
MvaI CCWGG 1 cut(s) 956
MvnI CGCG 1 cut(s) 28
NdeII GATC 2 cut(s) 618, 661
NlaIII CATG 5 cut(s) 575, 605, 701, 794, 848
NlaIV GGNNCC 3 cut(s) 526, 678, 1030
NmuCI GTSAC 3 cut(s) 259, 590, 707
NsbI TGCGCA 1 cut(s) 822
NspI RCATGY 1 cut(s) 848
PaeI GCATGC 1 cut(s) 848
PagI TCATGA 2 cut(s) 571, 697
PaqCI CACCTGC 1 cut(s) 740
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 3 cut(s) 629, 883, 1010
PflFI GACNNNGTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 477, 1018
PleI GAGTC 2 cut(s) 378, 987
PpsI GAGTC 2 cut(s) 378, 987
Ppu21I YACGTR 1 cut(s) 707
PshAI GACNNNNGTC 2 cut(s) 14, 139
Psp1406I AACGTT 1 cut(s) 1060
Psp6I CCWGG 1 cut(s) 954
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 954
PspN4I GGNNCC 3 cut(s) 526, 678, 1030
PspPI GGNCC 2 cut(s) 311, 677
PsyI GACNNNGTC 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 1016
RsaI GTAC 2 cut(s) 424, 813
RsaNI GTAC 2 cut(s) 423, 812
Rsr2I CGGWCCG 1 cut(s) 311
RsrII CGGWCCG 1 cut(s) 311
SaqAI TTAA 2 cut(s) 117, 488
SatI GCNGC 2 cut(s) 476, 1017
Sau3AI GATC 2 cut(s) 618, 661
Sau96I GGNCC 2 cut(s) 311, 677
SchI GAGTC 2 cut(s) 379, 988
ScrFI CCNGG 1 cut(s) 956
SduI GDGCHC 2 cut(s) 59, 92
SfaNI GCATC 1 cut(s) 347
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
SphI GCATGC 1 cut(s) 848
Sse9I AATT 8 cut(s) 37, 128, 228, 296, 413, 445, 731, 917
SsiI CCGC 2 cut(s) 26, 952
SspI AATATT 1 cut(s) 963
SspMI CTAG 4 cut(s) 153, 935, 1089, 1096
StyD4I CCNGG 1 cut(s) 954
TaaI ACNGT 5 cut(s) 13, 72, 277, 422, 598
TaiI ACGT 2 cut(s) 709, 1063
TaqI TCGA 3 cut(s) 65, 627, 632
TaqII GACCGA 1 cut(s) 299
TasI AATT 8 cut(s) 37, 128, 228, 296, 413, 445, 731, 917
TatI WGTACW 1 cut(s) 811
TfiI GAWTC 3 cut(s) 629, 883, 1010
Tru1I TTAA 2 cut(s) 117, 488
Tru9I TTAA 2 cut(s) 117, 488
TscAI CASTG 3 cut(s) 75, 601, 935
TseFI GTSAC 3 cut(s) 259, 590, 707
TseI GCWGC 2 cut(s) 475, 1016
Tsp45I GTSAC 3 cut(s) 259, 590, 707
TspDTI ATGAA 6 cut(s) 533, 590, 686, 746, 807, 984
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 3 cut(s) 75, 601, 935
Tth111I GACNNNGTC 1 cut(s) 70
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 2 cut(s) 228, 731
XbaI TCTAGA 1 cut(s) 1088
XceI RCATGY 1 cut(s) 848
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 4 cut(s) 153, 935, 1089, 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.