Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004137

Physical Location & Seq

Genomic Coordinates Reverse (-)

8436911 .. 8438355

Gene Structure 1445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10850.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATTTTAGGGATTTGTCCTTTTATTCTGGTCTGGTTCAACAAGAAGTGCCTGGTCCGACAGCCGAGTTCGAGTTCGGCACTTCTCAAATCCCAGTTCATCCTAAAATCCCAAGAACTTCAAACCTCCGCCAAATACAAAACTAGAACCTATTTCCGAGGGAGGAAGATGGAGTTCTGGGGCGGAGGACACGTGTCCCTGAGTTTGGTGCTGGTGGGTTTTCTGGTTCTGTGCCAGTTAGAAGGGTCGTCAGGGTTGAGGTTCGTGATAGACAGGGAAGAGTGCTTTTCTCATGATGCAAAGTACATGGGAGACACGATTCACGTCTCTTTCGTGGTAATCAAAGTCGATTCGACCTGGCATTACACCGACGACGGCGTTGATCTCGTGATAAAGGGACCTGGTGGCGAACAAATTCATGACATACGCGACAAGACAAGCGAGAAGTATGACCTTGTGGTTCAGAAGCAAGGTGTTCACCAGTTCTGCTTCACTAACAAGTCTCCTTACCACGAAACTATTGACTTTGATGTACATGCTGCTCACTTTACATACCATGACCAGCATGCTAAAGACGGTGAGAGGCCATCACTTGTTATTACCATTTCCGTTATGGATGAGTCTTCTTTATGGCGGAATAATGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

217

Amino Acids

24.72

Weight (kDa)

6.62

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07680
fragaria_vesca	FvH4_3g42910 FvH4_3g42910 FvH4_3g42910 FvH4_6g40540 FvH4_6g40540
malus_domestica	MD03G1028700.v1.1 MD09G1128600.v1.1 MD17G1118000.v1.1
prunus_persica	Prupe.3G196600_v2.0.a1 Prupe.3G196600_v2.0.a1 Prupe.6G024700_v2.0.a1 Prupe.6G024700_v2.0.a1
pyrus_communis	pycom09g05220 pycom17g10850
rosa_chinensis	RchiOBHm_Chr2g0155801 RchiOBHm_Chr5g0076951
rosa_laevigata	RLG00000020865 RLG00000036636
rosa_multiflora	Rmu_sc0003417.1_g000010 Rmu_sc0007021.1_g000016 Rmu_sc0017500.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005200 Rroxscaffold_2G00093470
rosa_rugosa	Rorug05G0449700
rosa_samantha	Rh2AG516200 Rh2BG527100 Rh2CG501100 Rh2DG536100 Rh5AG504300 Rh5CG549900 Rh5DG538100
rosa_wichuraiana	Rw2G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	429
AciI	CCGC	3 cut(s)	129, 183, 634
AcsI	RAATTY	1 cut(s)	414
AcvI	CACGTG	1 cut(s)	193
AfaI	GTAC	2 cut(s)	305, 534
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflIII	ACRYGT	2 cut(s)	190, 192
AgsI	TTSAA	2 cut(s)	40, 122
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	3 cut(s)	51, 356, 400
Alw26I	GTCTC	3 cut(s)	306, 331, 507
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	55, 398
AsuHPI	GGTGA	2 cut(s)	470, 590
AvaII	GGWCC	2 cut(s)	55, 398
BauI	CACGAG	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	615
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	2 cut(s)	163, 595
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	3 cut(s)	53, 358, 402
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	3 cut(s)	306, 331, 507
BfaI	CTAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	3 cut(s)	53, 358, 402
Bme18I	GGWCC	2 cut(s)	55, 398
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	55, 398
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	3 cut(s)	53, 358, 402
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	88
BoxI	GACNNNNGTC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	615
BsaAI	YACGTR	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	3 cut(s)	94, 235, 481
BseBI	CCWGG	3 cut(s)	53, 358, 402
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	99, 622
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	3 cut(s)	94, 235, 481
BseXI	GCAGC	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	586
BslFI	GGGAC	2 cut(s)	181, 411
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	3 cut(s)	306, 331, 507
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	2 cut(s)	181, 411
BsnI	GGCC	1 cut(s)	586
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	382, 643
BspACI	CCGC	3 cut(s)	129, 183, 634
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	429
BspHI	TCATGA	2 cut(s)	292, 418
BspLI	GGNNCC	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	94, 235, 481
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	382, 643
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	3 cut(s)	53, 358, 402
Bst4CI	ACNGT	1 cut(s)	578
Bst6I	CTCTTC	1 cut(s)	273
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	99, 622
BstFNI	CGCG	1 cut(s)	429
BstKTI	GATC	2 cut(s)	385, 646
BstMAI	GTCTC	3 cut(s)	306, 331, 507
BstMBI	GATC	2 cut(s)	382, 643
BstNI	CCWGG	3 cut(s)	53, 358, 402
BstNSI	RCATGY	2 cut(s)	539, 569
BstPAI	GACNNNNGTC	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	51, 356, 400
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	615
BsuRI	GGCC	1 cut(s)	586
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	99, 622
BtsIMutI	CAGTG	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	567
CciI	TCATGA	2 cut(s)	292, 418
Cfr13I	GGNCC	2 cut(s)	55, 398
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	304, 533
CviAII	CATG	6 cut(s)	293, 307, 419, 536, 557, 566
CviJI	RGCY	2 cut(s)	64, 586
CviKI_1	RGCY	2 cut(s)	64, 586
CviQI	GTAC	2 cut(s)	304, 533
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	2 cut(s)	384, 645
DpnII	GATC	2 cut(s)	382, 643
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	3 cut(s)	118, 198, 649
Eco47I	GGWCC	2 cut(s)	55, 398
Eco72I	CACGTG	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	3 cut(s)	51, 356, 400
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	6 cut(s)	296, 310, 422, 539, 560, 569
FaqI	GGGAC	2 cut(s)	181, 411
FatI	CATG	6 cut(s)	292, 306, 418, 535, 556, 565
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	2 cut(s)	86, 629
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	586
Hin1II	CATG	6 cut(s)	296, 310, 422, 539, 560, 569
HinfI	GANTC	3 cut(s)	319, 350, 620
HphI	GGTGA	2 cut(s)	470, 590
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	3 cut(s)	59, 158, 465
Hpy188III	TCNNGA	4 cut(s)	265, 293, 388, 419
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	2 cut(s)	374, 377
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	2 cut(s)	192, 324
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	2 cut(s)	192, 324
Hsp92II	CATG	6 cut(s)	296, 310, 422, 539, 560, 569
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	382, 643
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	286
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	2 cut(s)	192, 324
MalI	GATC	2 cut(s)	384, 645
MboI	GATC	2 cut(s)	382, 643
MboII	GAAGA	3 cut(s)	178, 290, 615
MluCI	AATT	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	6 cut(s)	136, 152, 156, 179, 252, 576
MroXI	GAANNNNTTC	1 cut(s)	414
MspR9I	CCNGG	3 cut(s)	53, 358, 402
MvaI	CCWGG	3 cut(s)	53, 358, 402
MvnI	CGCG	1 cut(s)	429
NdeII	GATC	2 cut(s)	382, 643
NlaIII	CATG	6 cut(s)	296, 310, 422, 539, 560, 569
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	90
NspI	RCATGY	2 cut(s)	539, 569
PaeI	GCATGC	1 cut(s)	569
PagI	TCATGA	2 cut(s)	292, 418
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	319, 350
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	628
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	628
Ppu21I	YACGTR	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	398
PshAI	GACNNNNGTC	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	3 cut(s)	51, 356, 400
PspCI	CACGTG	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	51, 356, 400
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	55, 398
PspPPI	RGGWCCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	305, 534
RsaNI	GTAC	2 cut(s)	304, 533
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	2 cut(s)	382, 643
Sau96I	GGNCC	2 cut(s)	55, 398
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	3 cut(s)	53, 358, 402
SetI	ASST	9 cut(s)	128, 152, 195, 263, 327, 359, 403, 456, 475
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	2 cut(s)	55, 398
SphI	GCATGC	1 cut(s)	569
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	3 cut(s)	129, 183, 634
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	51, 356, 400
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	2 cut(s)	195, 327
TaqI	TCGA	3 cut(s)	71, 348, 353
TasI	AATT	1 cut(s)	414
TatI	WGTACW	2 cut(s)	303, 532
TfiI	GAWTC	2 cut(s)	319, 350
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	2 cut(s)	88, 407
TspGWI	ACGGA	1 cut(s)	598
VpaK11BI	GGWCC	2 cut(s)	55, 398
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	2 cut(s)	539, 569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.