MD04G1245700.v1.1

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
32116813 .. 32121108
4296 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1245700.v1.1.491

Sequence Viewer

Length: 1566 bp
ATGGCCAAATTCTCAGTACTCTCACTCTGCTGCATGCTTTTTGTGAGTTTGGTCGTGAACTTAATTGAGGCTGGCCCTCGAAGCTCTCTTGTCACTCATCTTCCTGGTTTTAATGCTACCTTTCCATCCAAGCACTACTCTGGATATATAACCACAGATGGAAAGAATCTTTTCTACTACTTCGTAGTTTCAGAAAGGAGCCCAGAAAGTGATCCCGTTGTTCTGTGGCTCAATGGTGGACCTGGCTGCTCTAGCTTCGACGGATTTGTCTATGAACATGGTCATCCGTCATGGGATTGCTCTCGCGCGAACTCACTTAACTTCGGAGTTCCAGAGCTCTCAAAAGGCCTCGTGCTAGGTAGAGATGAGAATATACATATAAGGCTTAGAGGATCCACTCCCCTGTGCAATGTTTCCAACATAATTTATTTGGATTCTCCTGCTGGTGTTGGGTTCTCTTACTCTCAAAACCAAACCAAATATATAACTGGGGACATCCAAACTGCTCATGATACCCATGCCTTTCTCCTCAAGTGGTTTCAGCAATTCCCAGAGTTTCAACCAAACCCGTTGTACATTTCGGGAGAGTCTTATGCTGGAGTGTATGTGCCAACTCTTGCTTCTCAAATTGCAAAAGGTATTAAAAATGGAACAAAACCAACTTTAAATCTGAAGGGTTACCTGGTGGGGAATGGAGTCGCAGACCGAAAATTTGATGCCAATGCTTTAGTCCCATTTGCTCATGGGATGGGTATCATTTCAGAACAAATCTTTCAGGAAATTATAGCTACTTGTGGTACTGACCTCCTTAATATTCCTCCTTCCAATCGTAGTCTATGCAACGAAAAGTTTCAACCATTTAACAAGGCTCTTGACGGACTAAACATCTACGACACCCTTGAGCCTTGTTACCATGGCCCTGGAACAGATAATAGCAAGAATTCCAAAGGAAATAATACAAGCAGCTTACCGTTAAGCTTTCAACAGTTGGGGACGACGACAGAGAAGCCTCTGGGAGTGAGGAAAAGGATGTTTGGCCGAGCCTGGCCCTTTCTAGCAAACGTAGAAGACGGCATTGTCCCATCGTGGCCTCAGCTCGCAAAGACGCTGAATTCCCGAGTTCCTTGTGTTAATGATGAAGTCGCAACGCTATGGCTGAACACTCCAGAAGTTAGGGAAGCAATACATGCAAAACCAGAAAGTGTGGCTGGTCCATGGGAGTTATGCACAGATAGAATAACATATTCACGCGATGCTGGAAGTATGATCCCTTACCACCAAAACCTTACAACCCAAGGTTATAGAGCACTTATTTTCAGTGGAGACCATGATATGTGTGTTCCGTACACTGGGAGTGAGGCATGGACTGCATCACTTGGATATAAGATTGTAGATGAATGGAGACCTTGGCTCTCCTCTGACGACCAAGTTGCTGGCTACTTACAAGGATATGCAAACGACCTCACCTTTCTCACCGTCAAGGGAGCTGGACACACTGTCCCGGAATACAAGCCTCGGGAGGCACTTGACTTCTTCCAACGCTTTTTGGACGAAAAACGCATTTGA

Protein Analysis

522

Amino Acids

57.7

Weight (kDa)

6.02

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 35 - 99 1.3e-22 Serine carboxypeptidase
Peptidase_S10 PF00450 137 - 517 1.6e-99 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 266, 1076
AccII CGCG 3 cut(s) 306, 308, 1251
AclWI GGATC 4 cut(s) 206, 387, 400, 1261
AcoI YGGCCR 2 cut(s) 3, 1036
AcsI RAATTY 4 cut(s) 8, 710, 940, 1111
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 4 cut(s) 18, 575, 799, 1346
AfiI CCNNNNNNNGG 1 cut(s) 1349
AgsI TTSAA 3 cut(s) 560, 854, 983
AhdI GACNNNNNGTC 1 cut(s) 1496
AjnI CCWGG 5 cut(s) 103, 241, 681, 919, 1043
AjuI GAANNNNNNNTTGG 2 cut(s) 604, 636
AluBI AGCT 8 cut(s) 84, 255, 337, 788, 966, 978, 1096, 1487
AluI AGCT 8 cut(s) 84, 255, 337, 788, 966, 978, 1096, 1487
Alw21I GWGCWC 2 cut(s) 339, 1309
Alw26I GTCTC 2 cut(s) 1317, 1396
AlwI GGATC 4 cut(s) 206, 387, 400, 1261
Ama87I CYCGRG 2 cut(s) 1116, 1515
AoxI GGCC 7 cut(s) 3, 73, 346, 916, 1036, 1046, 1088
ApeKI GCWGC 3 cut(s) 30, 246, 963
ApoI RAATTY 4 cut(s) 8, 710, 940, 1111
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
Asp700I GAANNNNTTC 2 cut(s) 170, 849
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 5 cut(s) 74, 239, 917, 1047, 1211
AsuC2I CCSGG 1 cut(s) 1502
AsuHPI GGTGA 2 cut(s) 1456, 1465
AvaI CYCGRG 2 cut(s) 1116, 1515
AvaII GGWCC 2 cut(s) 239, 1211
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 392
BanII GRGCYC 2 cut(s) 203, 339
BauI CACGAG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 1074
Bbv12I GWGCWC 2 cut(s) 339, 1309
BbvCI CCTCAGC 1 cut(s) 1092
BbvI GCAGC 3 cut(s) 17, 233, 975
BccI CCATC 4 cut(s) 133, 152, 742, 1090
BceAI ACGGC 1 cut(s) 1087
BcgI CGANNNNNNTGC 2 cut(s) 1412, 1446
BciT130I CCWGG 5 cut(s) 105, 243, 683, 921, 1045
BcnI CCSGG 1 cut(s) 1502
BcoDI GTCTC 2 cut(s) 1317, 1396
BfaI CTAG 3 cut(s) 252, 356, 1055
BisI GCNGC 3 cut(s) 31, 247, 964
BlsI GCNGC 3 cut(s) 32, 248, 965
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 6 cut(s) 105, 243, 683, 921, 1045, 1502
Bme18I GGWCC 2 cut(s) 239, 1211
BmeRI GACNNNNNGTC 1 cut(s) 1496
BmeT110I CYCGRG 2 cut(s) 1116, 1515
BmgT120I GGNCC 5 cut(s) 74, 239, 917, 1047, 1211
BmiI GGNNCC 2 cut(s) 200, 394
BmrFI CCNGG 6 cut(s) 105, 243, 683, 921, 1045, 1502
BmrI ACTGGG 2 cut(s) 498, 1359
BmsI GCATC 3 cut(s) 706, 1243, 1379
BmuI ACTGGG 2 cut(s) 498, 1359
BpiI GAAGAC 1 cut(s) 1074
BpmI CTGGAG 2 cut(s) 618, 1149
Bpu10I CCTNAGC 1 cut(s) 1092
BpuEI CTTGAG 2 cut(s) 515, 920
BpuMI CCSGG 1 cut(s) 1502
BsaBI GATNNNNATC 1 cut(s) 752
BsaI GGTCTC 2 cut(s) 1317, 1396
BsaJI CCNNGG 6 cut(s) 913, 919, 1214, 1294, 1406, 1514
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 1349
Bse1I ACTGG 2 cut(s) 493, 1354
Bse3DI GCAATG 1 cut(s) 415
Bse8I GATNNNNATC 1 cut(s) 752
BseBI CCWGG 5 cut(s) 105, 243, 683, 921, 1045
BseDI CCNNGG 6 cut(s) 913, 919, 1214, 1294, 1406, 1514
BseGI GGATG 5 cut(s) 125, 283, 495, 753, 1035
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 1 cut(s) 1349
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 2 cut(s) 27, 1106
BseNI ACTGG 2 cut(s) 493, 1354
BseRI GAGGAG 2 cut(s) 518, 1405
BseXI GCAGC 3 cut(s) 17, 233, 975
Bsh1236I CGCG 3 cut(s) 306, 308, 1251
BshFI GGCC 7 cut(s) 5, 75, 348, 918, 1038, 1048, 1090
BsiHKAI GWGCWC 2 cut(s) 339, 1309
BsiHKCI CYCGRG 2 cut(s) 1116, 1515
BsiSI CCGG 1 cut(s) 1502
BslFI GGGAC 5 cut(s) 506, 716, 1006, 1064, 1484
BslI CCNNNNNNNGG 1 cut(s) 1349
BsmAI GTCTC 2 cut(s) 1317, 1396
BsmFI GGGAC 5 cut(s) 506, 716, 1006, 1064, 1484
BsnI GGCC 7 cut(s) 5, 75, 348, 918, 1038, 1048, 1090
Bso31I GGTCTC 2 cut(s) 1317, 1396
BsoBI CYCGRG 2 cut(s) 1116, 1515
Bsp1286I GDGCHC 3 cut(s) 203, 339, 1309
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 3 cut(s) 211, 392, 1266
Bsp19I CCATGG 2 cut(s) 913, 1214
BspANI GGCC 7 cut(s) 5, 75, 348, 918, 1038, 1048, 1090
BspCNI CTCAG 2 cut(s) 26, 1105
BspFNI CGCG 3 cut(s) 306, 308, 1251
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 200, 394
BspPI GGATC 4 cut(s) 206, 387, 400, 1261
BspTNI GGTCTC 2 cut(s) 1317, 1396
BsrDI GCAATG 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 2 cut(s) 493, 1354
BssECI CCNNGG 6 cut(s) 913, 919, 1214, 1294, 1406, 1514
BssMI GATC 3 cut(s) 211, 392, 1266
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 4 cut(s) 913, 1214, 1294, 1406
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 5 cut(s) 105, 243, 683, 921, 1045
Bst4CI ACNGT 4 cut(s) 972, 987, 1477, 1498
BstAPI GCANNNNNTGC 2 cut(s) 1187, 1367
BstAUI TGTACA 1 cut(s) 573
BstC8I GCNNGC 4 cut(s) 35, 73, 1098, 1435
BstDEI CTNAG 3 cut(s) 13, 386, 1092
BstDSI CCRYGG 2 cut(s) 913, 1214
BstEII GGTNACC 1 cut(s) 677
BstF5I GGATG 5 cut(s) 125, 283, 495, 753, 1035
BstFNI CGCG 3 cut(s) 306, 308, 1251
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 3 cut(s) 214, 395, 1269
BstMAI GTCTC 2 cut(s) 1317, 1396
BstMBI GATC 3 cut(s) 211, 392, 1266
BstMWI GCNNNNNNNGC 4 cut(s) 81, 252, 1187, 1367
BstNI CCWGG 5 cut(s) 105, 243, 683, 921, 1045
BstNSI RCATGY 2 cut(s) 37, 1190
BstPI GGTNACC 1 cut(s) 677
BstSCI CCNGG 6 cut(s) 103, 241, 681, 919, 1043, 1500
BstUI CGCG 3 cut(s) 306, 308, 1251
BstV1I GCAGC 3 cut(s) 17, 233, 975
BstV2I GAAGAC 1 cut(s) 1074
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 2 cut(s) 920, 1433
BstYI RGATCY 1 cut(s) 392
BsuRI GGCC 7 cut(s) 5, 75, 348, 918, 1038, 1048, 1090
BtgI CCRYGG 2 cut(s) 913, 1214
BtgZI GCGATG 1 cut(s) 1266
BtsCI GGATG 5 cut(s) 125, 283, 495, 753, 1035
BtsIMutI CAGTG 3 cut(s) 1324, 1347, 1494
Cac8I GCNNGC 4 cut(s) 35, 73, 1098, 1435
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 5 cut(s) 74, 239, 917, 1047, 1211
CseI GACGC 1 cut(s) 1114
CsiI ACCWGGT 1 cut(s) 681
Csp6I GTAC 4 cut(s) 17, 574, 798, 1345
CviQI GTAC 4 cut(s) 17, 574, 798, 1345
DdeI CTNAG 3 cut(s) 13, 386, 1092
DpnI GATC 3 cut(s) 213, 394, 1268
DpnII GATC 3 cut(s) 211, 392, 1266
DraI TTTAAA 1 cut(s) 666
DrdI GACNNNNNNGTC 2 cut(s) 266, 1076
DriI GACNNNNNGTC 1 cut(s) 1496
DseDI GACNNNNNNGTC 2 cut(s) 266, 1076
EaeI YGGCCR 2 cut(s) 3, 1036
Eam1105I GACNNNNNGTC 1 cut(s) 1496
Ecl136II GAGCTC 1 cut(s) 337
Eco130I CCWWGG 4 cut(s) 913, 1214, 1294, 1406
Eco147I AGGCCT 1 cut(s) 348
Eco24I GRGCYC 2 cut(s) 203, 339
Eco31I GGTCTC 2 cut(s) 1317, 1396
Eco47I GGWCC 2 cut(s) 239, 1211
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 692
Eco88I CYCGRG 2 cut(s) 1116, 1515
Eco91I GGTNACC 1 cut(s) 677
EcoICRI GAGCTC 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 677
EcoRI GAATTC 2 cut(s) 940, 1111
EcoRII CCWGG 5 cut(s) 103, 241, 681, 919, 1043
EcoT14I CCWWGG 4 cut(s) 913, 1214, 1294, 1406
EcoT38I GRGCYC 2 cut(s) 203, 339
ErhI CCWWGG 4 cut(s) 913, 1214, 1294, 1406
FaqI GGGAC 5 cut(s) 506, 716, 1006, 1064, 1484
Fnu4HI GCNGC 3 cut(s) 31, 247, 964
FokI GGATG 5 cut(s) 112, 270, 482, 760, 1042
FriOI GRGCYC 2 cut(s) 203, 339
Fsp4HI GCNGC 3 cut(s) 31, 247, 964
FspBI CTAG 3 cut(s) 252, 356, 1055
GlaI GCGC 1 cut(s) 307
GluI GCNGC 3 cut(s) 31, 247, 964
GsuI CTGGAG 2 cut(s) 618, 1149
HaeIII GGCC 7 cut(s) 5, 75, 348, 918, 1038, 1048, 1090
HapII CCGG 1 cut(s) 1502
HgaI GACGC 1 cut(s) 1114
HhaI GCGC 1 cut(s) 308
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HindIII AAGCTT 1 cut(s) 976
HinfI GANTC 4 cut(s) 166, 434, 587, 696
HpaII CCGG 1 cut(s) 1502
HphI GGTGA 2 cut(s) 1456, 1465
Hpy166II GTNNAC 3 cut(s) 58, 239, 1347
Hpy188I TCNGA 5 cut(s) 193, 326, 672, 763, 1420
Hpy8I GTNNAC 3 cut(s) 58, 239, 1347
Hpy99I CGWCG 2 cut(s) 263, 1000
HpyAV CCTTC 2 cut(s) 667, 831
HpyCH4III ACNGT 4 cut(s) 972, 987, 1477, 1498
HpyCH4IV ACGT 1 cut(s) 1062
HpyCH4V TGCA 8 cut(s) 33, 408, 632, 840, 1190, 1227, 1370, 1454
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 252, 1187, 1367
HpyF3I CTNAG 3 cut(s) 13, 386, 1092
HpySE526I ACGT 1 cut(s) 1062
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 3 cut(s) 211, 392, 1266
LmnI GCTCC 2 cut(s) 198, 1484
Lsp1109I GCAGC 3 cut(s) 17, 233, 975
LweI GCATC 3 cut(s) 706, 1243, 1379
MabI ACCWGGT 1 cut(s) 681
MaeI CTAG 3 cut(s) 252, 356, 1055
MaeII ACGT 1 cut(s) 1062
MaeIII GTNAC 3 cut(s) 91, 677, 908
MalI GATC 3 cut(s) 213, 394, 1268
MboI GATC 3 cut(s) 211, 392, 1266
MboII GAAGA 3 cut(s) 92, 1079, 1525
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 3 cut(s) 203, 339, 1309
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 8, 63, 423, 545, 627, 710, 780, 940, 1111
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 596, 705
MmeI TCCRAC 2 cut(s) 441, 1561
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 170, 849
MscI TGGCCA 1 cut(s) 5
MseI TTAA 9 cut(s) 62, 111, 318, 642, 665, 810, 861, 974, 1131
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 1502
MspR9I CCNGG 6 cut(s) 105, 243, 683, 921, 1045, 1502
MvaI CCWGG 5 cut(s) 105, 243, 683, 921, 1045
MvnI CGCG 3 cut(s) 306, 308, 1251
MwoI GCNNNNNNNGC 4 cut(s) 81, 252, 1187, 1367
NciI CCSGG 1 cut(s) 1502
NcoI CCATGG 2 cut(s) 913, 1214
NdeII GATC 3 cut(s) 211, 392, 1266
NlaIV GGNNCC 2 cut(s) 200, 394
NmeAIII GCCGAG 1 cut(s) 1064
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 2 cut(s) 37, 1190
PaeI GCATGC 1 cut(s) 37
PagI TCATGA 1 cut(s) 508
PceI AGGCCT 1 cut(s) 348
PdmI GAANNNNTTC 2 cut(s) 170, 849
PfeI GAWTC 2 cut(s) 166, 434
PfoI TCCNGGA 1 cut(s) 1500
PkrI GCNGC 3 cut(s) 32, 248, 965
PleI GAGTC 2 cut(s) 595, 704
PpsI GAGTC 2 cut(s) 595, 704
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 5 cut(s) 103, 241, 681, 919, 1043
PspEI GGTNACC 1 cut(s) 677
PspGI CCWGG 5 cut(s) 103, 241, 681, 919, 1043
PspN4I GGNNCC 2 cut(s) 200, 394
PspPI GGNCC 5 cut(s) 74, 239, 917, 1047, 1211
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 4 cut(s) 18, 575, 799, 1346
RsaNI GTAC 4 cut(s) 17, 574, 798, 1345
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 9 cut(s) 62, 111, 318, 642, 665, 810, 861, 974, 1131
SatI GCNGC 3 cut(s) 31, 247, 964
Sau3AI GATC 3 cut(s) 211, 392, 1266
Sau96I GGNCC 5 cut(s) 74, 239, 917, 1047, 1211
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 2 cut(s) 596, 705
ScrFI CCNGG 6 cut(s) 105, 243, 683, 921, 1045, 1502
SduI GDGCHC 3 cut(s) 203, 339, 1309
SexAI ACCWGGT 1 cut(s) 681
SfaNI GCATC 3 cut(s) 706, 1243, 1379
SinI GGWCC 2 cut(s) 239, 1211
SmlI CTYRAG 2 cut(s) 530, 899
SmoI CTYRAG 2 cut(s) 530, 899
SphI GCATGC 1 cut(s) 37
Sse9I AATT 9 cut(s) 8, 63, 423, 545, 627, 710, 780, 940, 1111
SseBI AGGCCT 1 cut(s) 348
SspI AATATT 1 cut(s) 814
SspMI CTAG 3 cut(s) 252, 356, 1055
SstI GAGCTC 1 cut(s) 339
StuI AGGCCT 1 cut(s) 348
StyD4I CCNGG 6 cut(s) 103, 241, 681, 919, 1043, 1500
StyI CCWWGG 4 cut(s) 913, 1214, 1294, 1406
TaaI ACNGT 4 cut(s) 972, 987, 1477, 1498
TaiI ACGT 1 cut(s) 1065
TaqI TCGA 2 cut(s) 79, 258
TaqII GACCGA 1 cut(s) 720
TasI AATT 9 cut(s) 8, 63, 423, 545, 627, 710, 780, 940, 1111
TatI WGTACW 2 cut(s) 16, 573
TfiI GAWTC 2 cut(s) 166, 434
Tru1I TTAA 9 cut(s) 62, 111, 318, 642, 665, 810, 861, 974, 1131
Tru9I TTAA 9 cut(s) 62, 111, 318, 642, 665, 810, 861, 974, 1131
TscAI CASTG 3 cut(s) 1324, 1354, 1501
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 3 cut(s) 30, 246, 963
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 288, 1152, 1410
TspGWI ACGGA 4 cut(s) 276, 276, 891, 1332
TspRI CASTG 3 cut(s) 1324, 1354, 1501
VpaK11BI GGWCC 2 cut(s) 239, 1211
XapI RAATTY 4 cut(s) 8, 710, 940, 1111
XceI RCATGY 2 cut(s) 37, 1190
XmnI GAANNNNTTC 2 cut(s) 170, 849
XspI CTAG 3 cut(s) 252, 356, 1055
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.