Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002596

Physical Location & Seq

Genomic Coordinates Reverse (-)

72290011 .. 72291430

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0605300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCAACTGCTTCTCATCCCCACAACAATAGCTCTTCCCCATTTGAGTTCCTTGAGCATCTCAAGGGTTGTCACAAGGGTGATAAGGTCAAAGGCATCAATGACCTCAAGAAATACCTTGAAAAGTACGGTTATATACTTGAACTACAGGAACCAGAGTCATTCAAGCGACGATGATTTCGACGACCTTTTGGATGACGCCGTGAAGACTTACCAGATCAATTACCACCTCAAGGCCACCGGAACATTGGACGGCAAAACAGTGTCAAAGATGATGACGCCTCGTTGTGGCGTGCCGGATATCATCAATGGCACCTCGTCCATGCGATCAGCCAAGAAAAGGCGCCACCATGGTTCAATTCATACCACTGCTCACTACTCATTTTTCCTGGGAAATCCAAAATGGCCTTCCTCAAAATACCATCTCACTTACAGTTTTCTCCCCAACACCCCATCCGAAGCCATGGGCGCTGTAGCACGGGCTTTTGCAACATGGGCTGGAAACACTCACTTCACGTTCAGCCAGTCCCAAAGTTACGAGAATGCGGATTTGAAGATTAGTTTTCATAAGGGTGATCATGGAGACCGGAATTCATGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

200

Amino Acids

22.4

Weight (kDa)

9.75

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	49 - 91	5e-06	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	134 - 197	3.1e-09	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25420 AT4G12910 AT4G12910
fragaria_vesca	FvH4_2g17690 FvH4_6g00420 FvH4_6g00420 FvH4_6g00420
malus_domestica	MD00G1170000.v1.1 MD04G1245700.v1.1 MD05G1158200.v1.1 MD10G1151200.v1.1 MD12G1264200.v1.1 MD13G1061200.v1.1
prunus_persica	Prupe.6G362200_v2.0.a1 Prupe.8G189600_v2.0.a1
pyrus_communis	pycom04g21660 pycom05g15020 pycom10g13030 pycom12g23930
rosa_chinensis	RchiOBHm_Chr3g0447751 RchiOBHm_Chr6g0282671
rosa_laevigata	RLG00000002738
rosa_multiflora	Rmu_co8425633.1_g000001 Rmu_ssc0000391.1_g000016
rosa_roxburghii	Rroxscaffold_3G00245270 Rroxscaffold_6G00425950
rosa_rugosa	Rorug02G0605300 Rorug06G0148500 Rorug07G0145800
rosa_samantha	Rh3AG005000 Rh3BG004600 Rh3CG005000 Rh3DG004900 Rh6AG261900 Rh6BG265000 Rh6CG264100 Rh6DG256300 Rh7BG273200
rosa_wichuraiana	Rw3G000370 Rw6G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	311, 342
AciI	CCGC	1 cut(s)	545
AcsI	RAATTY	1 cut(s)	589
AcyI	GRCGYC	3 cut(s)	198, 278, 343
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	3 cut(s)	232, 287, 339
AgsI	TTSAA	5 cut(s)	121, 142, 165, 357, 553
AjnI	CCWGG	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	576
AoxI	GGCC	2 cut(s)	234, 404
ApoI	RAATTY	1 cut(s)	589
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	2 cut(s)	345, 470
AsuHPI	GGTGA	2 cut(s)	91, 584
BanI	GGYRCC	2 cut(s)	311, 342
BbsI	GAAGAC	1 cut(s)	212
BccI	CCATC	2 cut(s)	429, 460
BceAI	ACGGC	2 cut(s)	185, 268
BciT130I	CCWGG	1 cut(s)	389
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	576
BfmI	CTRYAG	2 cut(s)	145, 471
BfoI	RGCGCY	2 cut(s)	346, 471
Bme1390I	CCNGG	1 cut(s)	389
BmiI	GGNNCC	3 cut(s)	152, 313, 344
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	66, 104
BpiI	GAAGAC	1 cut(s)	212
BpuEI	CTTGAG	4 cut(s)	46, 73, 91, 215
BsaHI	GRCGYC	3 cut(s)	198, 278, 343
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	3 cut(s)	349, 388, 462
BsaWI	WCCGGW	2 cut(s)	239, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 287, 339
Bse1I	ACTGG	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	3 cut(s)	349, 388, 462
BseGI	GGATG	3 cut(s)	15, 199, 452
BseLI	CCNNNNNNNGG	3 cut(s)	232, 287, 339
BseNI	ACTGG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	236, 406
BshNI	GGYRCC	2 cut(s)	311, 342
BsiSI	CCGG	3 cut(s)	240, 296, 586
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	3 cut(s)	232, 287, 339
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	511
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	2 cut(s)	236, 406
Bso31I	GGTCTC	1 cut(s)	576
Bsp143I	GATC	3 cut(s)	216, 326, 574
Bsp19I	CCATGG	2 cut(s)	349, 462
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	2 cut(s)	236, 406
BspLI	GGNNCC	3 cut(s)	152, 313, 344
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	2 cut(s)	311, 342
BspTNI	GGTCTC	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	3 cut(s)	349, 388, 462
BssMI	GATC	3 cut(s)	216, 326, 574
BssNI	GRCGYC	3 cut(s)	198, 278, 343
BssT1I	CCWWGG	2 cut(s)	349, 462
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	3 cut(s)	130, 262, 434
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	3 cut(s)	198, 278, 343
BstC8I	GCNNGC	1 cut(s)	293
BstDSI	CCRYGG	2 cut(s)	349, 462
BstF5I	GGATG	3 cut(s)	15, 199, 452
BstH2I	RGCGCY	2 cut(s)	346, 471
BstHHI	GCGC	2 cut(s)	345, 470
BstKTI	GATC	3 cut(s)	219, 329, 577
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	3 cut(s)	216, 326, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 494
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	2 cut(s)	145, 471
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	236, 406
BtgI	CCRYGG	2 cut(s)	349, 462
BtsCI	GGATG	3 cut(s)	15, 199, 452
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	267, 366
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	2 cut(s)	345, 470
CseI	GACGC	2 cut(s)	206, 286
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	6 cut(s)	322, 350, 463, 492, 578, 594
CviJI	RGCY	8 cut(s)	32, 236, 332, 406, 461, 482, 497, 522
CviKI_1	RGCY	8 cut(s)	32, 236, 332, 406, 461, 482, 497, 522
CviQI	GTAC	1 cut(s)	126
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	3 cut(s)	218, 328, 576
DpnII	GATC	3 cut(s)	216, 326, 574
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	349, 462
Eco31I	GGTCTC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	387
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	349, 462
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
ErhI	CCWWGG	2 cut(s)	349, 462
FaeI	CATG	6 cut(s)	325, 353, 466, 495, 581, 597
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	6 cut(s)	321, 349, 462, 491, 577, 593
FbaI	TGATCA	1 cut(s)	574
FokI	GGATG	3 cut(s)	2, 206, 439
GlaI	GCGC	2 cut(s)	344, 469
HaeII	RGCGCY	2 cut(s)	346, 471
HaeIII	GGCC	2 cut(s)	236, 406
HapII	CCGG	3 cut(s)	240, 296, 586
HgaI	GACGC	2 cut(s)	206, 286
HhaI	GCGC	2 cut(s)	345, 470
Hin1I	GRCGYC	3 cut(s)	198, 278, 343
Hin1II	CATG	6 cut(s)	325, 353, 466, 495, 581, 597
Hin6I	GCGC	2 cut(s)	343, 468
HinP1I	GCGC	2 cut(s)	343, 468
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	3 cut(s)	240, 296, 586
HphI	GGTGA	2 cut(s)	91, 584
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	1 cut(s)	108
Hpy99I	CGWCG	2 cut(s)	173, 185
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	3 cut(s)	130, 262, 434
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	3 cut(s)	4, 488, 597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 494
HpySE526I	ACGT	1 cut(s)	515
Hsp92I	GRCGYC	3 cut(s)	198, 278, 343
Hsp92II	CATG	6 cut(s)	325, 353, 466, 495, 581, 597
HspAI	GCGC	2 cut(s)	343, 468
KasI	GGCGCC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	216, 326, 574
LguI	GCTCTTC	1 cut(s)	39
LweI	GCATC	2 cut(s)	66, 104
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	2 cut(s)	70, 533
MalI	GATC	3 cut(s)	218, 328, 576
MboI	GATC	3 cut(s)	216, 326, 574
MboII	GAAGA	3 cut(s)	26, 217, 565
MluCI	AATT	3 cut(s)	220, 357, 589
Mly113I	GGCGCC	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	5 cut(s)	115, 239, 291, 325, 421
MslI	CAYNNNNRTG	3 cut(s)	77, 570, 598
MspI	CCGG	3 cut(s)	240, 296, 586
MspR9I	CCNGG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	467, 494
NarI	GGCGCC	1 cut(s)	343
NcoI	CCATGG	2 cut(s)	349, 462
NdeII	GATC	3 cut(s)	216, 326, 574
NlaIII	CATG	6 cut(s)	325, 353, 466, 495, 581, 597
NlaIV	GGNNCC	3 cut(s)	152, 313, 344
NmuCI	GTSAC	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	547
PleI	GAGTC	1 cut(s)	165
PluTI	GGCGCC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	152, 313, 344
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	3 cut(s)	77, 570, 598
SapI	GCTCTTC	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	216, 326, 574
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	8 cut(s)	34, 89, 107, 119, 189, 231, 317, 518
SfaNI	GCATC	2 cut(s)	66, 104
SfcI	CTRYAG	2 cut(s)	145, 471
SfoI	GGCGCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	3 cut(s)	77, 570, 598
SmlI	CTYRAG	4 cut(s)	52, 61, 106, 230
SmoI	CTYRAG	4 cut(s)	52, 61, 106, 230
Sse9I	AATT	3 cut(s)	220, 357, 589
SsiI	CCGC	1 cut(s)	545
SspDI	GGCGCC	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	2 cut(s)	349, 462
TaaI	ACNGT	3 cut(s)	130, 262, 434
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	220, 357, 589
TscAI	CASTG	2 cut(s)	267, 373
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	350, 554, 582
TspRI	CASTG	2 cut(s)	267, 373
XapI	RAATTY	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.