Rroxscaffold_3G00245270

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
38147709 .. 38149153
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245270.1

Sequence Viewer

Length: 1341 bp
ATGGCGGGCATGGCCAGACTGTTGGGTACAATTCCCACCTGCTTCTCAATCATAATAATATGCTTAAGCTTGATAACAATGAGAATTGAGGCAGCCCCTCAGGGCTCTCTTGTCACCCAGCTTCCCGGCTTCAATGGCACTTTTCCGTCCAGCCACTATTCCGGATATGTCAGCATAGGCGCAAAGAATCTTTTCTACTACTTCGTAGTATCAGAAGGGAGCCCCGCAGACGATCCTCTTGTCTTGTGGCTCAATGGTGGACCCGGCTGCTCTAGCTTTGATGGATTCGTCTACGAACACGGGCCTTTCAATTTTGAACAAAAATCAAAAGAAGCATTCCCCACTTTACAGCTTAATCCTTACAGCTGGTCCAAGGTTTCCAACATACTGTATTTGGATTCTCCTGCTGGTGTTGGGTTTTCCTACTCACAAGACCCAAGCCAATATTCTTATGCTGGAGTCTACGTCCCTACTCTTGCCTACCAAGTTGCCACAGGTATACAAAATGGAACAAAACCAGTAGTAAATCTCAAGGGTTACATGGTGGGGAATGGAATTACAAACACACACTTTGATGACAATGCTCTTGTCCCTTTTGCTCATGGGATGGCCCTCATTTCAGATCAAATCTATGAGGGAGTTATAGAAGAATGTGGGATCAACTACTCCAACTCATCTAGTCCCAAGTGCGATGAGAAACTTCAACTGGTTCGCGAGGCTCTTGGTGGACTAAACATGTACGATGTACTTGAGCCTTGTTACCATGACCCAGCTGGAACTTATTCAGGAAATGCTACTTCTACAACAACCAAAAGCAGCAACTTACCCTTAAGCTTCCAGCAACTAGGCAAGTCGTCTGAGAAGCCTCTCGGAGTGAGGAAGAGGATGTCACTCAATGTTCCATGCTTTAATGATGAAGTCGCAACTAAATGGCTGAACGACCCAGCAGTCAGGGAAGCAATTCATGCCAAGCCTGCAAGTGTGTCTGGTCCCTGGGAATTATGCACAGATAGAATAAGTTATAATTTTGGTGCTGGAAGTATGATCCCATACCACCGAAACCTTACAACTAAAGGATACAAAGCAATCATTTTCAGTGGAGACCATGATATATCTGTGCCGTATACTGGAAGCCAGGCATGGACTAGTTCACTTGGTTATAAGGTTATAGACCAATGGAGGTCTTGGCGATCCAATGACCAAGTTGCAGGCTACTTGCAAGCATATGAAAACGACCTCACCTTTCTCACTGTCAAGGGAGCTGGGCACACAGTTCCTGAATACAAGCCACGAGAGGCACTTGATTTCTACAGCCGCTGGTTGGCAGGAAAACCGATATGA

Protein Analysis

446

Amino Acids

48.86

Weight (kDa)

5.86

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 42 - 148 3.1e-41 Serine carboxypeptidase
Peptidase_S10 PF00450 150 - 442 2.3e-68 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1023, 1161
AarI CACCTGC 1 cut(s) 47
AasI GACNNNNNNGTC 1 cut(s) 947
Acc36I ACCTGC 1 cut(s) 47
AccI GTMKAC 4 cut(s) 291, 462, 499, 1124
AccII CGCG 1 cut(s) 714
AccIII TCCGGA 1 cut(s) 161
AciI CCGC 3 cut(s) 5, 225, 1315
AclWI GGATC 4 cut(s) 227, 665, 1039, 1185
AcoI YGGCCR 1 cut(s) 12
AfaI GTAC 3 cut(s) 28, 740, 747
AfiI CCNNNNNNNGG 2 cut(s) 1127, 1321
AflII CTTAAG 2 cut(s) 64, 829
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 4 cut(s) 133, 310, 317, 704
AhlI ACTAGT 1 cut(s) 1145
AjnI CCWGG 2 cut(s) 992, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 430, 462
AluBI AGCT 8 cut(s) 69, 121, 276, 352, 366, 773, 834, 1262
AluI AGCT 8 cut(s) 69, 121, 276, 352, 366, 773, 834, 1262
Alw26I GTCTC 1 cut(s) 1095
AlwI GGATC 4 cut(s) 227, 665, 1039, 1185
AlwNI CAGNNNCTG 2 cut(s) 1277, 1317
Aor13HI TCCGGA 1 cut(s) 161
AoxI GGCC 3 cut(s) 12, 302, 609
ApeKI GCWGC 3 cut(s) 92, 267, 816
Asp700I GAANNNNTTC 3 cut(s) 191, 781, 960
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 5 cut(s) 260, 302, 369, 610, 989
AsuC2I CCSGG 2 cut(s) 126, 264
AsuHPI GGTGA 2 cut(s) 106, 1231
AvaII GGWCC 3 cut(s) 260, 369, 989
AxyI CCTNAGG 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 1269
BalI TGGCCA 1 cut(s) 14
BanII GRGCYC 2 cut(s) 107, 224
BauI CACGAG 1 cut(s) 1290
BbvI GCAGC 3 cut(s) 104, 254, 828
BccI CCATC 2 cut(s) 275, 601
BceAI ACGGC 1 cut(s) 1105
BciT130I CCWGG 2 cut(s) 994, 1136
BciVI GTATCC 1 cut(s) 1070
BcnI CCSGG 2 cut(s) 126, 264
BcoDI GTCTC 1 cut(s) 1095
BcuI ACTAGT 1 cut(s) 1145
BfaI CTAG 4 cut(s) 273, 678, 845, 1146
BfmI CTRYAG 1 cut(s) 1309
BfrI CTTAAG 2 cut(s) 64, 829
BfuAI ACCTGC 1 cut(s) 47
BfuI GTATCC 1 cut(s) 1070
BisI GCNGC 4 cut(s) 93, 268, 817, 1315
BlsI GCNGC 4 cut(s) 94, 269, 818, 1316
Bme1390I CCNGG 4 cut(s) 126, 264, 994, 1136
Bme18I GGWCC 3 cut(s) 260, 369, 989
BmgT120I GGNCC 5 cut(s) 260, 302, 369, 610, 989
BmiI GGNNCC 3 cut(s) 221, 262, 991
BmrFI CCNGG 4 cut(s) 126, 264, 994, 1136
BpmI CTGGAG 1 cut(s) 477
BpuEI CTTGAG 2 cut(s) 515, 770
BpuMI CCSGG 2 cut(s) 126, 264
BsaI GGTCTC 1 cut(s) 1095
BsaJI CCNNGG 3 cut(s) 372, 992, 993
BsaWI WCCGGW 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 1127, 1321
Bse1I ACTGG 3 cut(s) 518, 711, 1132
Bse21I CCTNAGG 1 cut(s) 99
BseAI TCCGGA 1 cut(s) 161
BseBI CCWGG 2 cut(s) 994, 1136
BseDI CCNNGG 3 cut(s) 372, 992, 993
BseGI GGATG 2 cut(s) 612, 891
BseLI CCNNNNNNNGG 2 cut(s) 1127, 1321
BseMII CTCAG 2 cut(s) 113, 849
BseNI ACTGG 3 cut(s) 518, 711, 1132
BseSI GKGCMC 1 cut(s) 1269
BseXI GCAGC 3 cut(s) 104, 254, 828
BseYI CCCAGC 4 cut(s) 117, 769, 943, 1262
Bsh1236I CGCG 1 cut(s) 714
BshFI GGCC 3 cut(s) 14, 304, 611
BsiSI CCGG 3 cut(s) 126, 162, 264
BslFI GGGAC 4 cut(s) 452, 575, 666, 975
BslI CCNNNNNNNGG 2 cut(s) 1127, 1321
BsmAI GTCTC 1 cut(s) 1095
BsmFI GGGAC 4 cut(s) 452, 575, 666, 975
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 3 cut(s) 14, 304, 611
Bso31I GGTCTC 1 cut(s) 1095
Bsp1286I GDGCHC 3 cut(s) 107, 224, 1269
Bsp13I TCCGGA 1 cut(s) 161
Bsp143I GATC 5 cut(s) 232, 622, 657, 1044, 1190
Bsp68I TCGCGA 1 cut(s) 714
BspACI CCGC 3 cut(s) 5, 225, 1315
BspANI GGCC 3 cut(s) 14, 304, 611
BspCNI CTCAG 2 cut(s) 112, 850
BspEI TCCGGA 1 cut(s) 161
BspFNI CGCG 1 cut(s) 714
BspLI GGNNCC 3 cut(s) 221, 262, 991
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 4 cut(s) 227, 665, 1039, 1185
BspTI CTTAAG 2 cut(s) 64, 829
BspTNI GGTCTC 1 cut(s) 1095
BsrI ACTGG 3 cut(s) 518, 711, 1132
BssECI CCNNGG 3 cut(s) 372, 992, 993
BssMI GATC 5 cut(s) 232, 622, 657, 1044, 1190
BssNAI GTATAC 2 cut(s) 500, 1125
BssSI CACGAG 1 cut(s) 1290
BssT1I CCWWGG 1 cut(s) 372
Bst1107I GTATAC 2 cut(s) 500, 1125
Bst2BI CACGAG 1 cut(s) 1290
Bst2UI CCWGG 2 cut(s) 994, 1136
Bst4CI ACNGT 4 cut(s) 21, 390, 1252, 1273
Bst6I CTCTTC 1 cut(s) 875
BstAFI CTTAAG 2 cut(s) 64, 829
BstAPI GCANNNNNTGC 1 cut(s) 965
BstC8I GCNNGC 4 cut(s) 7, 975, 1210, 1221
BstDEI CTNAG 2 cut(s) 99, 858
BstF5I GGATG 2 cut(s) 612, 891
BstFNI CGCG 1 cut(s) 714
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 5 cut(s) 235, 625, 660, 1047, 1193
BstMAI GTCTC 1 cut(s) 1095
BstMBI GATC 5 cut(s) 232, 622, 657, 1044, 1190
BstMWI GCNNNNNNNGC 5 cut(s) 11, 135, 273, 965, 974
BstNI CCWGG 2 cut(s) 994, 1136
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 4 cut(s) 124, 262, 992, 1134
BstSFI CTRYAG 1 cut(s) 1309
BstSLI GKGCMC 1 cut(s) 1269
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 3 cut(s) 104, 254, 828
BstXI CCANNNNNNTGG 1 cut(s) 22
BstZ17I GTATAC 2 cut(s) 500, 1125
Bsu36I CCTNAGG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 1070
BsuRI GGCC 3 cut(s) 14, 304, 611
BtgZI GCGATG 1 cut(s) 705
BtsCI GGATG 2 cut(s) 612, 891
BtsIMutI CAGTG 2 cut(s) 1102, 1248
BtuMI TCGCGA 1 cut(s) 714
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 4 cut(s) 7, 975, 1210, 1221
CaiI CAGNNNCTG 2 cut(s) 1277, 1317
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 260, 302, 369, 610, 989
Csp6I GTAC 3 cut(s) 27, 739, 746
CviAII CATG 9 cut(s) 10, 541, 602, 736, 764, 903, 965, 1106, 1140
CviQI GTAC 3 cut(s) 27, 739, 746
DdeI CTNAG 2 cut(s) 99, 858
DpnI GATC 5 cut(s) 234, 624, 659, 1046, 1192
DpnII GATC 5 cut(s) 232, 622, 657, 1044, 1190
DrdI GACNNNNNNGTC 1 cut(s) 947
DseDI GACNNNNNNGTC 1 cut(s) 947
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 875
EarI CTCTTC 1 cut(s) 875
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 2 cut(s) 107, 224
Eco31I GGTCTC 1 cut(s) 1095
Eco47I GGWCC 3 cut(s) 260, 369, 989
Eco81I CCTNAGG 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 992, 1134
EcoT14I CCWWGG 1 cut(s) 372
EcoT38I GRGCYC 2 cut(s) 107, 224
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 9 cut(s) 13, 544, 605, 739, 767, 906, 968, 1109, 1143
FaqI GGGAC 4 cut(s) 452, 575, 666, 975
FatI CATG 9 cut(s) 9, 540, 601, 735, 763, 902, 964, 1105, 1139
FauI CCCGC 1 cut(s) 232
FauNDI CATATG 1 cut(s) 1225
FblI GTMKAC 4 cut(s) 291, 462, 499, 1124
Fnu4HI GCNGC 4 cut(s) 93, 268, 817, 1315
FokI GGATG 2 cut(s) 619, 898
FriOI GRGCYC 2 cut(s) 107, 224
Fsp4HI GCNGC 4 cut(s) 93, 268, 817, 1315
FspBI CTAG 4 cut(s) 273, 678, 845, 1146
GlaI GCGC 1 cut(s) 181
GluI GCNGC 4 cut(s) 93, 268, 817, 1315
GsaI CCCAGC 4 cut(s) 121, 773, 947, 1266
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 3 cut(s) 14, 304, 611
HapII CCGG 3 cut(s) 126, 162, 264
HhaI GCGC 1 cut(s) 182
Hin1II CATG 9 cut(s) 13, 544, 605, 739, 767, 906, 968, 1109, 1143
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 2 cut(s) 67, 832
HinfI GANTC 4 cut(s) 187, 285, 398, 459
HpaII CCGG 3 cut(s) 126, 162, 264
HphI GGTGA 2 cut(s) 106, 1231
Hpy166II GTNNAC 7 cut(s) 260, 292, 463, 500, 728, 1125, 1151
Hpy188I TCNGA 4 cut(s) 214, 622, 859, 872
Hpy188III TCNNGA 4 cut(s) 162, 713, 786, 1277
Hpy8I GTNNAC 7 cut(s) 260, 292, 463, 500, 728, 1125, 1151
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 4 cut(s) 21, 390, 1252, 1273
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 4 cut(s) 977, 1005, 1208, 1219
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 135, 273, 965, 974
HpyF3I CTNAG 2 cut(s) 99, 858
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 9 cut(s) 13, 544, 605, 739, 767, 906, 968, 1109, 1143
HspAI GCGC 1 cut(s) 180
Kpn2I TCCGGA 1 cut(s) 161
Kzo9I GATC 5 cut(s) 232, 622, 657, 1044, 1190
LmnI GCTCC 2 cut(s) 219, 1259
Lsp1109I GCAGC 3 cut(s) 104, 254, 828
MaeI CTAG 4 cut(s) 273, 678, 845, 1146
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 4 cut(s) 112, 536, 758, 888
MalI GATC 5 cut(s) 234, 624, 659, 1046, 1192
MboI GATC 5 cut(s) 232, 622, 657, 1044, 1190
MboII GAAGA 2 cut(s) 659, 892
MhlI GDGCHC 3 cut(s) 107, 224, 1269
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 7 cut(s) 30, 84, 310, 555, 960, 998, 1024
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 1 cut(s) 468
MmeI TCCRAC 2 cut(s) 405, 693
Mox20I TGGCCA 1 cut(s) 14
MroI TCCGGA 1 cut(s) 161
MroXI GAANNNNTTC 3 cut(s) 191, 781, 960
MscI TGGCCA 1 cut(s) 14
MseI TTAA 4 cut(s) 65, 354, 830, 909
MslI CAYNNNNRTG 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 3 cut(s) 366, 773, 1317
MspCI CTTAAG 2 cut(s) 64, 829
MspI CCGG 3 cut(s) 126, 162, 264
MspR9I CCNGG 4 cut(s) 126, 264, 994, 1136
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 2 cut(s) 994, 1136
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 5 cut(s) 11, 135, 273, 965, 974
NciI CCSGG 2 cut(s) 126, 264
NdeI CATATG 1 cut(s) 1225
NdeII GATC 5 cut(s) 232, 622, 657, 1044, 1190
NlaIII CATG 9 cut(s) 13, 544, 605, 739, 767, 906, 968, 1109, 1143
NlaIV GGNNCC 3 cut(s) 221, 262, 991
NmuCI GTSAC 2 cut(s) 112, 888
NruI TCGCGA 1 cut(s) 714
NspI RCATGY 1 cut(s) 739
PaqCI CACCTGC 1 cut(s) 47
PasI CCCWGGG 1 cut(s) 993
PciI ACATGT 1 cut(s) 735
PctI GAATGC 1 cut(s) 335
PdmI GAANNNNTTC 3 cut(s) 191, 781, 960
PfeI GAWTC 3 cut(s) 187, 285, 398
PkrI GCNGC 4 cut(s) 94, 269, 818, 1316
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PscI ACATGT 1 cut(s) 735
PsiI TTATAA 2 cut(s) 1023, 1161
Psp6I CCWGG 2 cut(s) 992, 1134
PspFI CCCAGC 4 cut(s) 117, 769, 943, 1262
PspGI CCWGG 2 cut(s) 992, 1134
PspN4I GGNNCC 3 cut(s) 221, 262, 991
PspPI GGNCC 5 cut(s) 260, 302, 369, 610, 989
PstNI CAGNNNCTG 2 cut(s) 1277, 1317
PvuII CAGCTG 2 cut(s) 366, 773
RruI TCGCGA 1 cut(s) 714
RsaI GTAC 3 cut(s) 28, 740, 747
RsaNI GTAC 3 cut(s) 27, 739, 746
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 4 cut(s) 65, 354, 830, 909
SatI GCNGC 4 cut(s) 93, 268, 817, 1315
Sau3AI GATC 5 cut(s) 232, 622, 657, 1044, 1190
Sau96I GGNCC 5 cut(s) 260, 302, 369, 610, 989
SchI GAGTC 1 cut(s) 468
ScrFI CCNGG 4 cut(s) 126, 264, 994, 1136
SduI GDGCHC 3 cut(s) 107, 224, 1269
SfcI CTRYAG 1 cut(s) 1309
SinI GGWCC 3 cut(s) 260, 369, 989
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 4 cut(s) 64, 530, 749, 829
SmoI CTYRAG 4 cut(s) 64, 530, 749, 829
SpeI ACTAGT 1 cut(s) 1145
Sse9I AATT 7 cut(s) 30, 84, 310, 555, 960, 998, 1024
SsiI CCGC 3 cut(s) 5, 225, 1315
SspI AATATT 1 cut(s) 446
SspMI CTAG 4 cut(s) 273, 678, 845, 1146
StyD4I CCNGG 4 cut(s) 124, 262, 992, 1134
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 4 cut(s) 21, 390, 1252, 1273
TaiI ACGT 1 cut(s) 468
TasI AATT 7 cut(s) 30, 84, 310, 555, 960, 998, 1024
TatI WGTACW 1 cut(s) 745
TauI GCSGC 1 cut(s) 1317
TfiI GAWTC 3 cut(s) 187, 285, 398
Tru1I TTAA 4 cut(s) 65, 354, 830, 909
Tru9I TTAA 4 cut(s) 65, 354, 830, 909
TscAI CASTG 2 cut(s) 1102, 1255
TseFI GTSAC 2 cut(s) 112, 888
TseI GCWGC 3 cut(s) 92, 267, 816
Tsp45I GTSAC 2 cut(s) 112, 888
TspDTI ATGAA 3 cut(s) 930, 953, 1242
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 2 cut(s) 1102, 1255
Vha464I CTTAAG 2 cut(s) 64, 829
VpaK11BI GGWCC 3 cut(s) 260, 369, 989
XceI RCATGY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 770
XmiI GTMKAC 4 cut(s) 291, 462, 499, 1124
XmnI GAANNNNTTC 3 cut(s) 191, 781, 960
XspI CTAG 4 cut(s) 273, 678, 845, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.