Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425633.1

Orthogroup ID

OG0002596

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1446

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425633.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

tatgtacatgtgcgtgcagggccgttcaattttgaacaaaaatcgaaaggagcattgcccactttacaacttaatccttacagctggtccaaggtttccaacatgctgtatttggattctcctgctggtgttgggttttcctactcagaagacccaagccaatacgtaactggggatcttcaaactgctgccgacacccacgccttcctcctcagctggtttaagcagtacccggagtttctttccaatcccttttacatttccggggagtcttatgctggagtctacgtccctactcttgcctttcaagttgccacaggtattcaaaatggaacaaaaccagttgtaaatctcaagggttacatggtggggaatggagtcacagacagaaactttgatgacaatgctcttgtcccttttgctcatgggatggccctcatttcagatcaaatttatgagggagttatagaagaatgtgggatcaactactccaactcatctagtcccaagtgcaatgagaaacttaatctggctcgcgaggctcttggtggactaaatatctacaacgtccttgagccttgttaccacggaactgaatcaggaaatgatacttctacaacaaccaaaagcagcaacttaccccttagctttcagcaactaggcaagtcgcctgagaagcctctcggagtgagaaagaggatgtttggccgcgcttggccttatcagatgtcagtagaagatggcttagtccctttgtggccacagctagctgctaaatctaactcacgcagtgttccatgctttaatgatgaagtcgcaactaaatggctgaacgaccccgcagttagggaagcaattcatgccaagcctgtaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

292

Amino Acids

32.1

Weight (kDa)

5.77

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25420 AT4G12910 AT4G12910
fragaria_vesca	FvH4_2g17690 FvH4_6g00420 FvH4_6g00420 FvH4_6g00420
malus_domestica	MD00G1170000.v1.1 MD04G1245700.v1.1 MD05G1158200.v1.1 MD10G1151200.v1.1 MD12G1264200.v1.1 MD13G1061200.v1.1
prunus_persica	Prupe.6G362200_v2.0.a1 Prupe.8G189600_v2.0.a1
pyrus_communis	pycom04g21660 pycom05g15020 pycom10g13030 pycom12g23930
rosa_chinensis	RchiOBHm_Chr3g0447751 RchiOBHm_Chr6g0282671
rosa_laevigata	RLG00000002738
rosa_multiflora	Rmu_co8425633.1_g000001 Rmu_ssc0000391.1_g000016
rosa_roxburghii	Rroxscaffold_3G00245270 Rroxscaffold_6G00425950
rosa_rugosa	Rorug02G0605300 Rorug06G0148500 Rorug07G0145800
rosa_samantha	Rh3AG005000 Rh3BG004600 Rh3CG005000 Rh3DG004900 Rh6AG261900 Rh6BG265000 Rh6CG264100 Rh6DG256300 Rh7BG273200
rosa_wichuraiana	Rw3G000370 Rw6G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	2 cut(s)	537, 711
AciI	CCGC	2 cut(s)	709, 840
AclWI	GGATC	2 cut(s)	183, 488
AcoI	YGGCCR	2 cut(s)	706, 758
AcsI	RAATTY	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	791
AfaI	GTAC	2 cut(s)	6, 230
AfiI	CCNNNNNNNGG	1 cut(s)	846
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	5 cut(s)	28, 35, 182, 308, 326
AluBI	AGCT	6 cut(s)	84, 216, 648, 766, 770, 876
AluI	AGCT	6 cut(s)	84, 216, 648, 766, 770, 876
AlwI	GGATC	2 cut(s)	183, 488
AoxI	GGCC	5 cut(s)	20, 432, 706, 716, 758
ApeKI	GCWGC	3 cut(s)	188, 630, 770
ApoI	RAATTY	1 cut(s)	450
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	3 cut(s)	20, 87, 433
AsuC2I	CCSGG	2 cut(s)	233, 265
AsuNHI	GCTAGC	1 cut(s)	766
AvaII	GGWCC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	175, 642, 757
BccI	CCATC	2 cut(s)	424, 734
BceAI	ACGGC	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	233, 265
BfaI	CTAG	3 cut(s)	501, 659, 767
BisI	GCNGC	4 cut(s)	189, 631, 709, 771
BlsI	GCNGC	4 cut(s)	190, 632, 710, 772
Bme1390I	CCNGG	2 cut(s)	233, 265
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	3 cut(s)	20, 87, 433
BmrFI	CCNGG	2 cut(s)	233, 265
BmrI	ACTGGG	1 cut(s)	180
BmtI	GCTAGC	1 cut(s)	770
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	2 cut(s)	212, 644
BpuEI	CTTGAG	2 cut(s)	338, 593
BpuMI	CCSGG	2 cut(s)	233, 265
BsaAI	YACGTR	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	90, 264, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	2 cut(s)	175, 341
Bse3DI	GCAATG	2 cut(s)	53, 520
BseDI	CCNNGG	3 cut(s)	90, 264, 586
BseGI	GGATG	2 cut(s)	435, 705
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	2 cut(s)	53, 520
BseMII	CTCAG	3 cut(s)	159, 226, 663
BseNI	ACTGG	2 cut(s)	175, 341
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	3 cut(s)	175, 642, 757
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	2 cut(s)	537, 711
BshFI	GGCC	5 cut(s)	22, 434, 708, 718, 760
BsiSI	CCGG	2 cut(s)	233, 264
BslFI	GGGAC	4 cut(s)	275, 398, 489, 734
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmFI	GGGAC	4 cut(s)	275, 398, 489, 734
BsnI	GGCC	5 cut(s)	22, 434, 708, 718, 760
Bsp1407I	TGTACA	1 cut(s)	4
Bsp143I	GATC	3 cut(s)	175, 445, 480
Bsp68I	TCGCGA	1 cut(s)	537
BspACI	CCGC	2 cut(s)	709, 840
BspANI	GGCC	5 cut(s)	22, 434, 708, 718, 760
BspCNI	CTCAG	3 cut(s)	158, 225, 664
BspFNI	CGCG	2 cut(s)	537, 711
BspOI	GCTAGC	1 cut(s)	770
BspPI	GGATC	2 cut(s)	183, 488
BsrDI	GCAATG	2 cut(s)	53, 520
BsrGI	TGTACA	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	175, 341
BssECI	CCNNGG	3 cut(s)	90, 264, 586
BssMI	GATC	3 cut(s)	175, 445, 480
BssT1I	CCWWGG	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstAUI	TGTACA	1 cut(s)	4
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	15, 535, 768
BstDEI	CTNAG	5 cut(s)	145, 212, 644, 672, 745
BstDSI	CCRYGG	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	435, 705
BstFNI	CGCG	2 cut(s)	537, 711
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	3 cut(s)	178, 448, 483
BstMBI	GATC	3 cut(s)	175, 445, 480
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 539, 676, 860
BstNSI	RCATGY	2 cut(s)	11, 106
BstSCI	CCNGG	2 cut(s)	231, 263
BstSNI	TACGTA	1 cut(s)	166
BstUI	CGCG	2 cut(s)	537, 711
BstV1I	GCAGC	3 cut(s)	175, 642, 757
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	5 cut(s)	22, 434, 708, 718, 760
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	2 cut(s)	435, 705
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	1 cut(s)	796
BtuMI	TCGCGA	1 cut(s)	537
Cac8I	GCNNGC	3 cut(s)	15, 535, 768
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	20, 87, 433
Csp6I	GTAC	2 cut(s)	5, 229
CviAII	CATG	6 cut(s)	8, 103, 364, 425, 798, 860
CviQI	GTAC	2 cut(s)	5, 229
DdeI	CTNAG	5 cut(s)	145, 212, 644, 672, 745
DpnI	GATC	3 cut(s)	177, 447, 482
DpnII	GATC	3 cut(s)	175, 445, 480
DraIII	CACNNNGTG	1 cut(s)	791
EaeI	YGGCCR	2 cut(s)	706, 758
Eco105I	TACGTA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	6 cut(s)	11, 106, 367, 428, 801, 863
FaqI	GGGAC	4 cut(s)	275, 398, 489, 734
FatI	CATG	6 cut(s)	7, 102, 363, 424, 797, 859
FauI	CCCGC	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	189, 631, 709, 771
FokI	GGATG	2 cut(s)	442, 712
Fsp4HI	GCNGC	4 cut(s)	189, 631, 709, 771
FspBI	CTAG	3 cut(s)	501, 659, 767
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	4 cut(s)	189, 631, 709, 771
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	5 cut(s)	22, 434, 708, 718, 760
HapII	CCGG	2 cut(s)	233, 264
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	6 cut(s)	11, 106, 367, 428, 801, 863
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HinfI	GANTC	5 cut(s)	116, 269, 282, 378, 596
HpaII	CCGG	2 cut(s)	233, 264
Hpy166II	GTNNAC	2 cut(s)	286, 551
Hpy188I	TCNGA	4 cut(s)	148, 445, 686, 726
Hpy188III	TCNNGA	2 cut(s)	536, 600
Hpy8I	GTNNAC	2 cut(s)	286, 551
HpyAV	CCTTC	1 cut(s)	214
HpyCH4IV	ACGT	3 cut(s)	165, 288, 567
HpyCH4V	TGCA	2 cut(s)	17, 513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 539, 676, 860
HpyF3I	CTNAG	5 cut(s)	145, 212, 644, 672, 745
HpySE526I	ACGT	3 cut(s)	165, 288, 567
Hsp92II	CATG	6 cut(s)	11, 106, 367, 428, 801, 863
HspAI	GCGC	1 cut(s)	711
Kzo9I	GATC	3 cut(s)	175, 445, 480
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	3 cut(s)	175, 642, 757
MaeI	CTAG	3 cut(s)	501, 659, 767
MaeII	ACGT	3 cut(s)	165, 288, 567
MaeIII	GTNAC	4 cut(s)	166, 359, 379, 581
MalI	GATC	3 cut(s)	177, 447, 482
MboI	GATC	3 cut(s)	175, 445, 480
MboII	GAAGA	4 cut(s)	161, 170, 482, 749
MflI	RGATCY	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	760
MluCI	AATT	3 cut(s)	28, 450, 855
MluNI	TGGCCA	1 cut(s)	760
MlyI	GAGTC	3 cut(s)	278, 291, 387
MmeI	TCCRAC	2 cut(s)	123, 516
MnlI	CCTC	7 cut(s)	218, 221, 446, 451, 532, 690, 690
Mox20I	TGGCCA	1 cut(s)	760
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	760
MseI	TTAA	4 cut(s)	72, 222, 525, 804
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	760
MspA1I	CMGCKG	2 cut(s)	84, 216
MspI	CCGG	2 cut(s)	233, 264
MspR9I	CCNGG	2 cut(s)	233, 265
MvnI	CGCG	2 cut(s)	537, 711
MwoI	GCNNNNNNNGC	4 cut(s)	19, 539, 676, 860
NciI	CCSGG	2 cut(s)	233, 265
NdeII	GATC	3 cut(s)	175, 445, 480
NheI	GCTAGC	1 cut(s)	766
NlaIII	CATG	6 cut(s)	11, 106, 367, 428, 801, 863
NmuCI	GTSAC	1 cut(s)	379
NruI	TCGCGA	1 cut(s)	537
NspI	RCATGY	2 cut(s)	11, 106
PciI	ACATGT	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	116, 596
PkrI	GCNGC	4 cut(s)	190, 632, 710, 772
PleI	GAGTC	3 cut(s)	277, 290, 386
PpsI	GAGTC	3 cut(s)	277, 290, 386
Ppu21I	YACGTR	1 cut(s)	166
PscI	ACATGT	1 cut(s)	7
PspPI	GGNCC	3 cut(s)	20, 87, 433
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	2 cut(s)	84, 216
RruI	TCGCGA	1 cut(s)	537
RsaI	GTAC	2 cut(s)	6, 230
RsaNI	GTAC	2 cut(s)	5, 229
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	72, 222, 525, 804
SatI	GCNGC	4 cut(s)	189, 631, 709, 771
Sau3AI	GATC	3 cut(s)	175, 445, 480
Sau96I	GGNCC	3 cut(s)	20, 87, 433
SchI	GAGTC	3 cut(s)	278, 291, 387
ScrFI	CCNGG	2 cut(s)	233, 265
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	353, 572
SmoI	CTYRAG	2 cut(s)	353, 572
SnaBI	TACGTA	1 cut(s)	166
Sse9I	AATT	3 cut(s)	28, 450, 855
SsiI	CCGC	2 cut(s)	709, 840
SspMI	CTAG	3 cut(s)	501, 659, 767
StyD4I	CCNGG	2 cut(s)	231, 263
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	3 cut(s)	168, 291, 570
TaqI	TCGA	1 cut(s)	44
TasI	AATT	3 cut(s)	28, 450, 855
TatI	WGTACW	1 cut(s)	4
TauI	GCSGC	1 cut(s)	711
TfiI	GAWTC	2 cut(s)	116, 596
Tru1I	TTAA	4 cut(s)	72, 222, 525, 804
Tru9I	TTAA	4 cut(s)	72, 222, 525, 804
TscAI	CASTG	1 cut(s)	796
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	188, 630, 770
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	825, 848
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	796
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	1 cut(s)	450
XceI	RCATGY	2 cut(s)	11, 106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	3 cut(s)	501, 659, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.