MD12G1264200.v1.1

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
33044075 .. 33049726
5652 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1264200.v1.1.491

Sequence Viewer

Length: 1518 bp
ATGGCGGCCATGGCCAAATTTTCAGTACTCTCACTCTGCTGCATGCTTTTTGTGAGTTTGGTCGTCATTATTGAGGCTGCCCCTCAAAGCTCTCTTGTCACTCATCTTCCTGGTTTTAATGCTACCTTTCCATCCAAGCACTACTCTGGATATATTAGCATAGATGGAAAGAATCTTTTCTATTACTTCGTAGTTTCAGAAGGGAACCCAGCAACTGATCCGGTTGTTCTGTGGCTCAATGGTGGACCCGGCTGCTCTAGCTTCGACGGATTTGTCTATGAACATGGACCATTCAATTTTGCAGAAGGAAAACCTAAAGGAGCATTGCCTGTTTTGCATCTTAATCCTTATAGCTGGTCCAAGGTTTCCAACATAATTTATTTGGATTCTCCTGCTGGTGTTGGATTTTCTTACTCTCGAAACCAAACCAAATATACCACTGGGGATATCCAGACTGCTCTTGATACCCATGCCTTTCTCCTCCGGTGGTTTCAGCAATTCCCAGAGTTTCAACCAAATCCGTTTTATATTTCGGGAGAGTCTTATGCTGGAGTCTACGTACCAACTCTTGCTTCTCAAATTGCAAAAGGTATAAACAAAGGAACAAAACCAACTCTAAATCTCAAGGGTTACCTGGTGGGGAATGGAGTCACAGACCGAAGATTCGATGCCAATGCTTTAGTCCCATTTGCTCATGGGATGGCTCTCATTTCAGAAAAAATCTTTCAGGAAGTTGTTGCCACATGTGGTACTGACCTCCTTAATGTTCCTCCTTCCAATCGTAGTCTATGCCAAGAAAAATTTCAACCACTTGACAGGGCTCTTGACGAACTAAACCTCTACGACATCCTTGAACCTTGTTACCATGGCCCCGGAGCTGATAATAACAAAAATTCCAAAGAAAATAAAACAAGCAGCTTACCGTTAAGCTTTCAGCAATTGGGGAAGACGACAGAGAAGCCTCTGGGAGTGAGGAAAAGGATGTTTGGCCGAGCTTGGCCTTTTCGAGCAAACGTAGAAGACGGCATTGTCCCATCATGGCCTCAGCTCGCAAAGACACTGGATTCTGGTGTTCCTTGTATCAATGATGAAGTTGCAACGCTATGGCTGAACACTCCAAAAGTTAGGGAAGCAATTCATGCACAACCAGAAAGTGTGGCTGGTCCATGGGAGTTATGCACAGATAGAATAAGTTATTCACGCGATGCTGGAAGCATGATCCCTTACCACCAAAACCTTACAACCCAAGGTTACAGAGCCCTTATTTACAGTGGAGACCATGATATGTGTGTTCCGTACACTGGGAGCGAGGCATGGACTGCATCACTTGGATATGAGATTGTAGATGAATGGAGACCTTGGTTCTCCTCTGACAACCAAGTTGCCGGCTACTTACAAGGATATGCCAACAGCCTCACCTTTCTCACCATCAAGGGAGCTGGACACACCGTCCCAGAGTACAAGCCGCGGGAGGCACTCGACTTCTTCCAACGCTTTGTGGGCGGAAAACGCATTTGA

Protein Analysis

506

Amino Acids

55.89

Weight (kDa)

6.27

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 37 - 501 9.3e-138 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 272, 1028
AccI GTMKAC 1 cut(s) 555
AccII CGCG 2 cut(s) 1203, 1468
AciI CCGC 4 cut(s) 5, 1466, 1468, 1503
AclWI GGATC 2 cut(s) 212, 1213
AcoI YGGCCR 3 cut(s) 6, 12, 988
AcsI RAATTY 3 cut(s) 17, 800, 892
AfaI GTAC 5 cut(s) 27, 561, 751, 1298, 1460
AfiI CCNNNNNNNGG 1 cut(s) 1301
AflIII ACRYGT 1 cut(s) 743
AgsI TTSAA 4 cut(s) 295, 512, 806, 854
AhdI GACNNNNNGTC 1 cut(s) 1448
AjnI CCWGG 2 cut(s) 109, 633
AjuI GAANNNNNNNTTGG 4 cut(s) 556, 588, 786, 818
AluBI AGCT 9 cut(s) 90, 261, 354, 878, 918, 930, 995, 1048, 1439
AluI AGCT 9 cut(s) 90, 261, 354, 878, 918, 930, 995, 1048, 1439
Alw26I GTCTC 2 cut(s) 1269, 1348
AlwI GGATC 2 cut(s) 212, 1213
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 6 cut(s) 6, 12, 868, 988, 998, 1040
ApeKI GCWGC 4 cut(s) 39, 77, 252, 915
ApoI RAATTY 3 cut(s) 17, 800, 892
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
Asp700I GAANNNNTTC 3 cut(s) 176, 801, 1134
AspS9I GGNCC 5 cut(s) 245, 287, 357, 869, 1163
AsuC2I CCSGG 2 cut(s) 249, 873
AsuHPI GGTGA 2 cut(s) 1408, 1417
AvaII GGWCC 4 cut(s) 245, 287, 357, 1163
BalI TGGCCA 1 cut(s) 14
BanII GRGCYC 2 cut(s) 823, 1261
BbsI GAAGAC 2 cut(s) 953, 1026
BbvCI CCTCAGC 1 cut(s) 1044
BbvI GCAGC 4 cut(s) 26, 64, 239, 927
BccI CCATC 5 cut(s) 139, 158, 694, 1042, 1436
BceAI ACGGC 1 cut(s) 1039
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BciT130I CCWGG 2 cut(s) 111, 635
BcnI CCSGG 2 cut(s) 249, 873
BcoDI GTCTC 2 cut(s) 1269, 1348
BfaI CTAG 1 cut(s) 258
BisI GCNGC 6 cut(s) 6, 40, 78, 253, 916, 1466
BlsI GCNGC 6 cut(s) 7, 41, 79, 254, 917, 1467
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 4 cut(s) 111, 249, 635, 873
Bme18I GGWCC 4 cut(s) 245, 287, 357, 1163
BmeRI GACNNNNNGTC 1 cut(s) 1448
BmgT120I GGNCC 5 cut(s) 245, 287, 357, 869, 1163
BmiI GGNNCC 3 cut(s) 206, 247, 871
BmrFI CCNGG 4 cut(s) 111, 249, 635, 873
BmrI ACTGGG 2 cut(s) 450, 1311
BmsI GCATC 4 cut(s) 346, 658, 1195, 1331
BmuI ACTGGG 2 cut(s) 450, 1311
BpiI GAAGAC 2 cut(s) 953, 1026
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 1044
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 2 cut(s) 249, 873
BsaAI YACGTR 1 cut(s) 559
BsaI GGTCTC 2 cut(s) 1269, 1348
BsaJI CCNNGG 8 cut(s) 9, 360, 865, 871, 1166, 1246, 1358, 1466
BsaWI WCCGGW 2 cut(s) 220, 483
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 1 cut(s) 1301
Bse118I RCCGGY 1 cut(s) 1385
Bse1I ACTGG 3 cut(s) 445, 1065, 1306
Bse3DI GCAATG 1 cut(s) 323
BseBI CCWGG 2 cut(s) 111, 635
BseDI CCNNGG 8 cut(s) 9, 360, 865, 871, 1166, 1246, 1358, 1466
BseGI GGATG 4 cut(s) 131, 705, 846, 987
BseLI CCNNNNNNNGG 1 cut(s) 1301
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 1058
BseNI ACTGG 3 cut(s) 445, 1065, 1306
BseRI GAGGAG 2 cut(s) 470, 1357
BseXI GCAGC 4 cut(s) 26, 64, 239, 927
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 2 cut(s) 1203, 1468
BshFI GGCC 6 cut(s) 8, 14, 870, 990, 1000, 1042
BsiSI CCGG 5 cut(s) 221, 249, 484, 873, 1386
BslFI GGGAC 3 cut(s) 668, 1016, 1436
BslI CCNNNNNNNGG 1 cut(s) 1301
BsmAI GTCTC 2 cut(s) 1269, 1348
BsmFI GGGAC 3 cut(s) 668, 1016, 1436
BsnI GGCC 6 cut(s) 8, 14, 870, 990, 1000, 1042
Bso31I GGTCTC 2 cut(s) 1269, 1348
Bsp1286I GDGCHC 2 cut(s) 823, 1261
Bsp143I GATC 2 cut(s) 217, 1218
Bsp19I CCATGG 3 cut(s) 9, 865, 1166
BspACI CCGC 4 cut(s) 5, 1466, 1468, 1503
BspANI GGCC 6 cut(s) 8, 14, 870, 990, 1000, 1042
BspCNI CTCAG 1 cut(s) 1057
BspFNI CGCG 2 cut(s) 1203, 1468
BspLI GGNNCC 3 cut(s) 206, 247, 871
BspPI GGATC 2 cut(s) 212, 1213
BspTNI GGTCTC 2 cut(s) 1269, 1348
BsrDI GCAATG 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 1385
BsrI ACTGG 3 cut(s) 445, 1065, 1306
BssAI RCCGGY 1 cut(s) 1385
BssECI CCNNGG 8 cut(s) 9, 360, 865, 871, 1166, 1246, 1358, 1466
BssMI GATC 2 cut(s) 217, 1218
BssT1I CCWWGG 6 cut(s) 9, 360, 865, 1166, 1246, 1358
Bst2UI CCWGG 2 cut(s) 111, 635
Bst4CI ACNGT 3 cut(s) 924, 1271, 1450
BstAPI GCANNNNNTGC 2 cut(s) 1139, 1319
BstBAI YACGTR 1 cut(s) 559
BstC8I GCNNGC 3 cut(s) 44, 1050, 1387
BstDEI CTNAG 1 cut(s) 1044
BstDSI CCRYGG 4 cut(s) 9, 865, 1166, 1466
BstEII GGTNACC 1 cut(s) 629
BstF5I GGATG 4 cut(s) 131, 705, 846, 987
BstFNI CGCG 2 cut(s) 1203, 1468
BstKTI GATC 2 cut(s) 220, 1221
BstMAI GTCTC 2 cut(s) 1269, 1348
BstMBI GATC 2 cut(s) 217, 1218
BstMWI GCNNNNNNNGC 7 cut(s) 11, 258, 334, 1139, 1319, 1500, 1509
BstNI CCWGG 2 cut(s) 111, 635
BstNSI RCATGY 2 cut(s) 46, 747
BstPI GGTNACC 1 cut(s) 629
BstSCI CCNGG 4 cut(s) 109, 247, 633, 871
BstSNI TACGTA 1 cut(s) 559
BstUI CGCG 2 cut(s) 1203, 1468
BstV1I GCAGC 4 cut(s) 26, 64, 239, 927
BstV2I GAAGAC 2 cut(s) 953, 1026
BsuRI GGCC 6 cut(s) 8, 14, 870, 990, 1000, 1042
BtgI CCRYGG 4 cut(s) 9, 865, 1166, 1466
BtgZI GCGATG 1 cut(s) 1218
BtsCI GGATG 4 cut(s) 131, 705, 846, 987
BtsIMutI CAGTG 4 cut(s) 438, 1058, 1276, 1299
Cac8I GCNNGC 3 cut(s) 44, 1050, 1387
CaiI CAGNNNCTG 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 1385
Cfr13I GGNCC 5 cut(s) 245, 287, 357, 869, 1163
Cfr42I CCGCGG 1 cut(s) 1469
CsiI ACCWGGT 1 cut(s) 633
Csp6I GTAC 5 cut(s) 26, 560, 750, 1297, 1459
CviQI GTAC 5 cut(s) 26, 560, 750, 1297, 1459
DdeI CTNAG 1 cut(s) 1044
DpnI GATC 2 cut(s) 219, 1220
DpnII GATC 2 cut(s) 217, 1218
DrdI GACNNNNNNGTC 2 cut(s) 272, 1028
DriI GACNNNNNGTC 1 cut(s) 1448
DseDI GACNNNNNNGTC 2 cut(s) 272, 1028
EaeI YGGCCR 3 cut(s) 6, 12, 988
Eam1105I GACNNNNNGTC 1 cut(s) 1448
EciI GGCGGA 1 cut(s) 1518
Eco105I TACGTA 1 cut(s) 559
Eco130I CCWWGG 6 cut(s) 9, 360, 865, 1166, 1246, 1358
Eco24I GRGCYC 2 cut(s) 823, 1261
Eco31I GGTCTC 2 cut(s) 1269, 1348
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 4 cut(s) 245, 287, 357, 1163
Eco91I GGTNACC 1 cut(s) 629
EcoO65I GGTNACC 1 cut(s) 629
EcoRII CCWGG 2 cut(s) 109, 633
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 6 cut(s) 9, 360, 865, 1166, 1246, 1358
EcoT38I GRGCYC 2 cut(s) 823, 1261
ErhI CCWWGG 6 cut(s) 9, 360, 865, 1166, 1246, 1358
FaqI GGGAC 3 cut(s) 668, 1016, 1436
FauI CCCGC 1 cut(s) 1461
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 6 cut(s) 6, 40, 78, 253, 916, 1466
FokI GGATG 4 cut(s) 118, 712, 833, 994
FriOI GRGCYC 2 cut(s) 823, 1261
Fsp4HI GCNGC 6 cut(s) 6, 40, 78, 253, 916, 1466
FspBI CTAG 1 cut(s) 258
GluI GCNGC 6 cut(s) 6, 40, 78, 253, 916, 1466
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 6 cut(s) 8, 14, 870, 990, 1000, 1042
HapII CCGG 5 cut(s) 221, 249, 484, 873, 1386
HindIII AAGCTT 1 cut(s) 928
HinfI GANTC 7 cut(s) 172, 386, 539, 552, 648, 663, 1064
HpaII CCGG 5 cut(s) 221, 249, 484, 873, 1386
HphI GGTGA 2 cut(s) 1408, 1417
Hpy166II GTNNAC 3 cut(s) 245, 556, 1299
Hpy188I TCNGA 3 cut(s) 199, 715, 1372
Hpy188III TCNNGA 7 cut(s) 147, 417, 451, 461, 534, 728, 824
Hpy8I GTNNAC 3 cut(s) 245, 556, 1299
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 194, 299, 783
HpyCH4III ACNGT 3 cut(s) 924, 1271, 1450
HpyCH4IV ACGT 2 cut(s) 558, 1014
HpyCH4V TGCA 8 cut(s) 42, 302, 337, 584, 1097, 1142, 1179, 1322
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 258, 334, 1139, 1319, 1500, 1509
HpyF3I CTNAG 1 cut(s) 1044
HpySE526I ACGT 2 cut(s) 558, 1014
KroI GCCGGC 1 cut(s) 1385
KroNI GCCGGC 1 cut(s) 1387
KspI CCGCGG 1 cut(s) 1469
Kzo9I GATC 2 cut(s) 217, 1218
LmnI GCTCC 4 cut(s) 320, 875, 1305, 1436
Lsp1109I GCAGC 4 cut(s) 26, 64, 239, 927
LweI GCATC 4 cut(s) 346, 658, 1195, 1331
MabI ACCWGGT 1 cut(s) 633
MaeI CTAG 1 cut(s) 258
MaeII ACGT 2 cut(s) 558, 1014
MaeIII GTNAC 5 cut(s) 97, 629, 649, 860, 1250
MalI GATC 2 cut(s) 219, 1220
MboI GATC 2 cut(s) 217, 1218
MboII GAAGA 5 cut(s) 98, 672, 958, 1031, 1477
MfeI CAATTG 1 cut(s) 938
MhlI GDGCHC 2 cut(s) 823, 1261
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 9 cut(s) 17, 295, 375, 497, 579, 800, 892, 938, 1134
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 3 cut(s) 548, 561, 657
MmeI TCCRAC 3 cut(s) 382, 393, 1513
Mox20I TGGCCA 1 cut(s) 14
MroNI GCCGGC 1 cut(s) 1385
MroXI GAANNNNTTC 3 cut(s) 176, 801, 1134
MscI TGGCCA 1 cut(s) 14
MseI TTAA 4 cut(s) 117, 342, 762, 926
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 1468
MspI CCGG 5 cut(s) 221, 249, 484, 873, 1386
MspR9I CCNGG 4 cut(s) 111, 249, 635, 873
MunI CAATTG 1 cut(s) 938
MvaI CCWGG 2 cut(s) 111, 635
MvnI CGCG 2 cut(s) 1203, 1468
MwoI GCNNNNNNNGC 7 cut(s) 11, 258, 334, 1139, 1319, 1500, 1509
NaeI GCCGGC 1 cut(s) 1387
NciI CCSGG 2 cut(s) 249, 873
NcoI CCATGG 3 cut(s) 9, 865, 1166
NdeII GATC 2 cut(s) 217, 1218
NgoMIV GCCGGC 1 cut(s) 1385
NlaIV GGNNCC 3 cut(s) 206, 247, 871
NmeAIII GCCGAG 1 cut(s) 1016
NmuCI GTSAC 2 cut(s) 97, 649
NspI RCATGY 2 cut(s) 46, 747
PaeI GCATGC 1 cut(s) 46
PciI ACATGT 1 cut(s) 743
PdiI GCCGGC 1 cut(s) 1387
PdmI GAANNNNTTC 3 cut(s) 176, 801, 1134
PfeI GAWTC 4 cut(s) 172, 386, 663, 1064
PkrI GCNGC 6 cut(s) 7, 41, 79, 254, 917, 1467
PleI GAGTC 3 cut(s) 547, 560, 656
PpsI GAGTC 3 cut(s) 547, 560, 656
Ppu21I YACGTR 1 cut(s) 559
PscI ACATGT 1 cut(s) 743
Psp6I CCWGG 2 cut(s) 109, 633
PspEI GGTNACC 1 cut(s) 629
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 109, 633
PspN4I GGNNCC 3 cut(s) 206, 247, 871
PspPI GGNCC 5 cut(s) 245, 287, 357, 869, 1163
PstNI CAGNNNCTG 1 cut(s) 215
RsaI GTAC 5 cut(s) 27, 561, 751, 1298, 1460
RsaNI GTAC 5 cut(s) 26, 560, 750, 1297, 1459
SacII CCGCGG 1 cut(s) 1469
SaqAI TTAA 4 cut(s) 117, 342, 762, 926
SatI GCNGC 6 cut(s) 6, 40, 78, 253, 916, 1466
Sau3AI GATC 2 cut(s) 217, 1218
Sau96I GGNCC 5 cut(s) 245, 287, 357, 869, 1163
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 3 cut(s) 548, 561, 657
ScrFI CCNGG 4 cut(s) 111, 249, 635, 873
SduI GDGCHC 2 cut(s) 823, 1261
SexAI ACCWGGT 1 cut(s) 633
SfaNI GCATC 4 cut(s) 346, 658, 1195, 1331
Sfr303I CCGCGG 1 cut(s) 1469
SgrBI CCGCGG 1 cut(s) 1469
SinI GGWCC 4 cut(s) 245, 287, 357, 1163
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SnaBI TACGTA 1 cut(s) 559
SphI GCATGC 1 cut(s) 46
Sse9I AATT 9 cut(s) 17, 295, 375, 497, 579, 800, 892, 938, 1134
SsiI CCGC 4 cut(s) 5, 1466, 1468, 1503
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 4 cut(s) 109, 247, 633, 871
StyI CCWWGG 6 cut(s) 9, 360, 865, 1166, 1246, 1358
TaaI ACNGT 3 cut(s) 924, 1271, 1450
TaiI ACGT 2 cut(s) 561, 1017
TaqI TCGA 5 cut(s) 264, 418, 666, 1006, 1479
TaqII GACCGA 1 cut(s) 672
TasI AATT 9 cut(s) 17, 295, 375, 497, 579, 800, 892, 938, 1134
TatI WGTACW 2 cut(s) 25, 1458
TauI GCSGC 2 cut(s) 8, 1468
TfiI GAWTC 4 cut(s) 172, 386, 663, 1064
Tru1I TTAA 4 cut(s) 117, 342, 762, 926
Tru9I TTAA 4 cut(s) 117, 342, 762, 926
TscAI CASTG 4 cut(s) 445, 1065, 1276, 1306
TseFI GTSAC 2 cut(s) 97, 649
TseI GCWGC 4 cut(s) 39, 77, 252, 915
Tsp45I GTSAC 2 cut(s) 97, 649
TspDTI ATGAA 4 cut(s) 294, 1104, 1127, 1362
TspGWI ACGGA 3 cut(s) 282, 510, 1284
TspRI CASTG 4 cut(s) 445, 1065, 1276, 1306
VpaK11BI GGWCC 4 cut(s) 245, 287, 357, 1163
XapI RAATTY 3 cut(s) 17, 800, 892
XceI RCATGY 2 cut(s) 46, 747
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 3 cut(s) 176, 801, 1134
XspI CTAG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.