Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002596

Physical Location & Seq

Genomic Coordinates Reverse (-)

4303109 .. 4307234

Gene Structure 4126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1061200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTATATATGTTTCCAACATAATTTTATTTGGATTCTCCTGCTGGTGTTGGATTTTTCTTACTCTCGAAACCAAACCAAATATACCACTGGGGATATCCAGACTGCTCTTGATACCCATGCCTTTCTCCTCCGGTGGTTTCAGCAATTCCCAGAGTTTCAACCAAATCCGTTTTATATTTCGGGAGAGTCTTATGCTGGAGTCTACGGTTACCTGGTGGGGAATGGAGTCACAGACCGAAGATTCGATGCCAATGCTTTAGTCCCATTTGCTCATGGGATGGCTCTCATTTCAGAAAAAATCTTTCAGGAAGTTGTTGCCACATGTGGTACTGACCTCCTTAATGTTCCTCCTTCCAATCGTAGTCTATGCCAAGAAAAATTTCAACCACTTGACAGGGCTCTTGACGAACTAAACCTCTACGACATCCTTGAACCTTGTTACCATGGCCCCGGAGCTGATAATAACAAAAATTCCAAAGAAAATAAAACAAGCAGCTTACCGTTAAGCTTTCAGCAATTGGGGAAGACGACAGAGAAGCCTCTGGGAGTGAGGAAAAGGATGTTTGGCCGAGCTTGGCCTTTTCGAGCAAACGTAGAAGACGGCATTGTCCCATCATGGCCTCAGCTCGCAAAGACACTGGATTCTGGTGTTCCTTGTATCAATGATGAAGTTGCAACGCTATGGCTGAACACTCCAAAAGTTAGGGAAGCAATTCATGCACAACCAGAAAGTGTGGCTGGTCCATGGGAGTTATGCACAGATAGAATAAGTTATTCACGCGATGCTGGAAGCATGATCCCTTACCACCAAAACCTTACAACCCAAGGTTACAGAGCCCTTATTTACAGTGGAGACCATGATATGTGTGTTCCGTACACTGGGAGCGAGGCATGGACTGCATCACTTGGATATGAGATTGTAGATGAATGGAGACCTTGGTTCTCCTCTGACAACCAAGTTGCCGGCTACTTACAAGGATATGCCAACAGCCTCACCTTTCTCACCATCAAGGGAGCTGGACACACCGTCCCAGAGTACAAGCCGCGGGAGGCACTCGACTTCTTCCAACGCTTTGTGGGCGGAAAACGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

366

Amino Acids

41.3

Weight (kDa)

5.65

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	19 - 69	1.9e-16	Serine carboxypeptidase
Peptidase_S10	PF00450	70 - 361	4.6e-56	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25420 AT4G12910 AT4G12910
fragaria_vesca	FvH4_2g17690 FvH4_6g00420 FvH4_6g00420 FvH4_6g00420
malus_domestica	MD00G1170000.v1.1 MD04G1245700.v1.1 MD05G1158200.v1.1 MD10G1151200.v1.1 MD12G1264200.v1.1 MD13G1061200.v1.1
prunus_persica	Prupe.6G362200_v2.0.a1 Prupe.8G189600_v2.0.a1
pyrus_communis	pycom04g21660 pycom05g15020 pycom10g13030 pycom12g23930
rosa_chinensis	RchiOBHm_Chr3g0447751 RchiOBHm_Chr6g0282671
rosa_laevigata	RLG00000002738
rosa_multiflora	Rmu_co8425633.1_g000001 Rmu_ssc0000391.1_g000016
rosa_roxburghii	Rroxscaffold_3G00245270 Rroxscaffold_6G00425950
rosa_rugosa	Rorug02G0605300 Rorug06G0148500 Rorug07G0145800
rosa_samantha	Rh3AG005000 Rh3BG004600 Rh3CG005000 Rh3DG004900 Rh6AG261900 Rh6BG265000 Rh6CG264100 Rh6DG256300 Rh7BG273200
rosa_wichuraiana	Rw3G000370 Rw6G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	2 cut(s)	783, 1048
AciI	CCGC	3 cut(s)	1046, 1048, 1083
AclWI	GGATC	1 cut(s)	793
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	2 cut(s)	380, 472
AfaI	GTAC	3 cut(s)	331, 878, 1040
AfiI	CCNNNNNNNGG	1 cut(s)	881
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	161, 386, 434
AhdI	GACNNNNNGTC	1 cut(s)	1028
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	6 cut(s)	458, 498, 510, 575, 628, 1019
AluI	AGCT	6 cut(s)	458, 498, 510, 575, 628, 1019
Alw26I	GTCTC	2 cut(s)	849, 928
AlwI	GGATC	1 cut(s)	793
AoxI	GGCC	4 cut(s)	448, 568, 578, 620
ApeKI	GCWGC	1 cut(s)	495
ApoI	RAATTY	2 cut(s)	380, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	2 cut(s)	381, 714
AspS9I	GGNCC	2 cut(s)	449, 743
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	988, 997
AvaII	GGWCC	1 cut(s)	743
BanII	GRGCYC	2 cut(s)	403, 841
BbsI	GAAGAC	2 cut(s)	533, 606
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	3 cut(s)	274, 622, 1016
BceAI	ACGGC	1 cut(s)	619
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	849, 928
BisI	GCNGC	2 cut(s)	496, 1046
BlsI	GCNGC	2 cut(s)	497, 1047
Bme1390I	CCNGG	2 cut(s)	215, 453
Bme18I	GGWCC	1 cut(s)	743
BmeRI	GACNNNNNGTC	1 cut(s)	1028
BmgT120I	GGNCC	2 cut(s)	449, 743
BmiI	GGNNCC	1 cut(s)	451
BmrFI	CCNGG	2 cut(s)	215, 453
BmrI	ACTGGG	2 cut(s)	99, 891
BmsI	GCATC	3 cut(s)	238, 775, 911
BmuI	ACTGGG	2 cut(s)	99, 891
BpiI	GAAGAC	2 cut(s)	533, 606
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	624
BpuMI	CCSGG	1 cut(s)	453
BsaI	GGTCTC	2 cut(s)	849, 928
BsaJI	CCNNGG	6 cut(s)	445, 451, 746, 826, 938, 1046
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	881
Bse118I	RCCGGY	1 cut(s)	965
Bse1I	ACTGG	3 cut(s)	94, 645, 886
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	6 cut(s)	445, 451, 746, 826, 938, 1046
BseGI	GGATG	3 cut(s)	285, 426, 567
BseLI	CCNNNNNNNGG	1 cut(s)	881
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	3 cut(s)	94, 645, 886
BseRI	GAGGAG	2 cut(s)	119, 937
BseXI	GCAGC	1 cut(s)	507
Bsh1236I	CGCG	2 cut(s)	783, 1048
BshFI	GGCC	4 cut(s)	450, 570, 580, 622
BsiSI	CCGG	3 cut(s)	133, 453, 966
BslFI	GGGAC	3 cut(s)	248, 596, 1016
BslI	CCNNNNNNNGG	1 cut(s)	881
BsmAI	GTCTC	2 cut(s)	849, 928
BsmFI	GGGAC	3 cut(s)	248, 596, 1016
BsnI	GGCC	4 cut(s)	450, 570, 580, 622
Bso31I	GGTCTC	2 cut(s)	849, 928
Bsp1286I	GDGCHC	2 cut(s)	403, 841
Bsp143I	GATC	1 cut(s)	798
Bsp19I	CCATGG	2 cut(s)	445, 746
BspACI	CCGC	3 cut(s)	1046, 1048, 1083
BspANI	GGCC	4 cut(s)	450, 570, 580, 622
BspCNI	CTCAG	1 cut(s)	637
BspFNI	CGCG	2 cut(s)	783, 1048
BspLI	GGNNCC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	793
BspTNI	GGTCTC	2 cut(s)	849, 928
BsrFI	RCCGGY	1 cut(s)	965
BsrI	ACTGG	3 cut(s)	94, 645, 886
BssAI	RCCGGY	1 cut(s)	965
BssECI	CCNNGG	6 cut(s)	445, 451, 746, 826, 938, 1046
BssMI	GATC	1 cut(s)	798
BssT1I	CCWWGG	4 cut(s)	445, 746, 826, 938
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	4 cut(s)	209, 504, 851, 1030
BstAPI	GCANNNNNTGC	2 cut(s)	719, 899
BstC8I	GCNNGC	2 cut(s)	630, 967
BstDEI	CTNAG	1 cut(s)	624
BstDSI	CCRYGG	3 cut(s)	445, 746, 1046
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	3 cut(s)	285, 426, 567
BstFNI	CGCG	2 cut(s)	783, 1048
BstKTI	GATC	1 cut(s)	801
BstMAI	GTCTC	2 cut(s)	849, 928
BstMBI	GATC	1 cut(s)	798
BstMWI	GCNNNNNNNGC	4 cut(s)	719, 899, 1080, 1089
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	213, 451
BstUI	CGCG	2 cut(s)	783, 1048
BstV1I	GCAGC	1 cut(s)	507
BstV2I	GAAGAC	2 cut(s)	533, 606
BsuRI	GGCC	4 cut(s)	450, 570, 580, 622
BtgI	CCRYGG	3 cut(s)	445, 746, 1046
BtgZI	GCGATG	1 cut(s)	798
BtsCI	GGATG	3 cut(s)	285, 426, 567
BtsIMutI	CAGTG	4 cut(s)	87, 638, 856, 879
Cac8I	GCNNGC	2 cut(s)	630, 967
Cfr10I	RCCGGY	1 cut(s)	965
Cfr13I	GGNCC	2 cut(s)	449, 743
Cfr42I	CCGCGG	1 cut(s)	1049
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	3 cut(s)	330, 877, 1039
CviQI	GTAC	3 cut(s)	330, 877, 1039
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	1 cut(s)	800
DpnII	GATC	1 cut(s)	798
DrdI	GACNNNNNNGTC	1 cut(s)	608
DriI	GACNNNNNGTC	1 cut(s)	1028
DseDI	GACNNNNNNGTC	1 cut(s)	608
EaeI	YGGCCR	1 cut(s)	568
Eam1105I	GACNNNNNGTC	1 cut(s)	1028
EciI	GGCGGA	1 cut(s)	1098
Eco130I	CCWWGG	4 cut(s)	445, 746, 826, 938
Eco24I	GRGCYC	2 cut(s)	403, 841
Eco31I	GGTCTC	2 cut(s)	849, 928
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	743
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	4 cut(s)	445, 746, 826, 938
EcoT38I	GRGCYC	2 cut(s)	403, 841
ErhI	CCWWGG	4 cut(s)	445, 746, 826, 938
FaqI	GGGAC	3 cut(s)	248, 596, 1016
FauI	CCCGC	1 cut(s)	1041
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	496, 1046
FokI	GGATG	3 cut(s)	292, 413, 574
FriOI	GRGCYC	2 cut(s)	403, 841
Fsp4HI	GCNGC	2 cut(s)	496, 1046
GluI	GCNGC	2 cut(s)	496, 1046
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	4 cut(s)	450, 570, 580, 622
HapII	CCGG	3 cut(s)	133, 453, 966
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	6 cut(s)	34, 188, 201, 228, 243, 644
HpaII	CCGG	3 cut(s)	133, 453, 966
HphI	GGTGA	2 cut(s)	988, 997
Hpy166II	GTNNAC	2 cut(s)	205, 879
Hpy188I	TCNGA	2 cut(s)	295, 952
Hpy188III	TCNNGA	6 cut(s)	66, 100, 110, 183, 308, 404
Hpy8I	GTNNAC	2 cut(s)	205, 879
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	4 cut(s)	209, 504, 851, 1030
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	4 cut(s)	677, 722, 759, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	719, 899, 1080, 1089
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	1 cut(s)	594
KroI	GCCGGC	1 cut(s)	965
KroNI	GCCGGC	1 cut(s)	967
KspI	CCGCGG	1 cut(s)	1049
Kzo9I	GATC	1 cut(s)	798
LmnI	GCTCC	3 cut(s)	455, 885, 1016
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	3 cut(s)	238, 775, 911
MabI	ACCWGGT	1 cut(s)	213
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	4 cut(s)	209, 229, 440, 830
MalI	GATC	1 cut(s)	800
MboI	GATC	1 cut(s)	798
MboII	GAAGA	4 cut(s)	252, 538, 611, 1057
MfeI	CAATTG	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	403, 841
MluCI	AATT	6 cut(s)	22, 146, 380, 472, 518, 714
MlyI	GAGTC	3 cut(s)	197, 210, 237
MmeI	TCCRAC	3 cut(s)	30, 40, 1093
MroNI	GCCGGC	1 cut(s)	965
MroXI	GAANNNNTTC	2 cut(s)	381, 714
MseI	TTAA	2 cut(s)	342, 506
MspA1I	CMGCKG	1 cut(s)	1048
MspI	CCGG	3 cut(s)	133, 453, 966
MspR9I	CCNGG	2 cut(s)	215, 453
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	2 cut(s)	783, 1048
MwoI	GCNNNNNNNGC	4 cut(s)	719, 899, 1080, 1089
NaeI	GCCGGC	1 cut(s)	967
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	2 cut(s)	445, 746
NdeII	GATC	1 cut(s)	798
NgoMIV	GCCGGC	1 cut(s)	965
NlaIV	GGNNCC	1 cut(s)	451
NmeAIII	GCCGAG	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	327
PciI	ACATGT	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	967
PdmI	GAANNNNTTC	2 cut(s)	381, 714
PfeI	GAWTC	3 cut(s)	34, 243, 644
PkrI	GCNGC	2 cut(s)	497, 1047
PleI	GAGTC	3 cut(s)	196, 209, 236
PpsI	GAGTC	3 cut(s)	196, 209, 236
PscI	ACATGT	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	2 cut(s)	449, 743
RsaI	GTAC	3 cut(s)	331, 878, 1040
RsaNI	GTAC	3 cut(s)	330, 877, 1039
SacII	CCGCGG	1 cut(s)	1049
SaqAI	TTAA	2 cut(s)	342, 506
SatI	GCNGC	2 cut(s)	496, 1046
Sau3AI	GATC	1 cut(s)	798
Sau96I	GGNCC	2 cut(s)	449, 743
SchI	GAGTC	3 cut(s)	197, 210, 237
ScrFI	CCNGG	2 cut(s)	215, 453
SduI	GDGCHC	2 cut(s)	403, 841
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	3 cut(s)	238, 775, 911
Sfr303I	CCGCGG	1 cut(s)	1049
SgrBI	CCGCGG	1 cut(s)	1049
SinI	GGWCC	1 cut(s)	743
Sse9I	AATT	6 cut(s)	22, 146, 380, 472, 518, 714
SsiI	CCGC	3 cut(s)	1046, 1048, 1083
StyD4I	CCNGG	2 cut(s)	213, 451
StyI	CCWWGG	4 cut(s)	445, 746, 826, 938
TaaI	ACNGT	4 cut(s)	209, 504, 851, 1030
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	4 cut(s)	67, 246, 586, 1059
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	6 cut(s)	22, 146, 380, 472, 518, 714
TatI	WGTACW	1 cut(s)	1038
TauI	GCSGC	1 cut(s)	1048
TfiI	GAWTC	3 cut(s)	34, 243, 644
Tru1I	TTAA	2 cut(s)	342, 506
Tru9I	TTAA	2 cut(s)	342, 506
TscAI	CASTG	4 cut(s)	94, 645, 856, 886
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	495
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	684, 707, 942
TspGWI	ACGGA	2 cut(s)	159, 864
TspRI	CASTG	4 cut(s)	94, 645, 856, 886
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	2 cut(s)	380, 472
XceI	RCATGY	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	2 cut(s)	381, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.