Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002596

Physical Location & Seq

Genomic Coordinates Reverse (-)

22711144 .. 22713473

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTGGAAAGTCTCCAACATAATTTATTTGGATTCTCCTGCTGGTGTTGGGTTCTCTTACTCTCAAAACCAAACCAAATATATAACCGGGGACATCCAAACTGCTTATGATACCCATGCCTTTCTCCTCAAGTGGTTTCAGCAATTCCCAGAGTTTCAACCAAACCCATTGTATATTTCGGGAGAGTCTTATGCTGGAGTCTATGTGCCAACTCTTGCTTCTCAAATTGCAAAAGTCTGTAACAATGTGCTGCATTTTCTACATATATGTATAGGTATTAAAAATGGAACAAAACCAACTTTAAATCTGAAGGGTTACCTGGTGGGGAATGGAGTCGCAGACCAAAAATTCGATGCCAATGCTTTAGTCCCATTTGCTCATGGGATGGGCCTCATTTCAGAACAAATCTTTCAGGAAATTATAGCTACTTGTGGTACTGACCTCCTTAATATTCCTCCTTCCAATCGTAGTCTATGCAACGAAAAGTTTCAACCATTTAACAAGGTGCAATTTTTAGCTCTTGACGGACTAAACATCTACGACACCCTTGAGCCTAGCTACCATGGCCCTGGAACAGATAATAACAAGAATTCCAAAGCAAATAATACAAGCAGCTTACCGTTAAGCTTTCAACAATTGGGGATGACGACAGAGAAGCCTCTGGGAGTGAGGAAAAGGATGTTTGGCCGAGCCTGGCCTTTTCTAGCAAACGTAGAAGATGGCATTGTCCCATCGTGGCCTCAGCTTGCAAAGACGCTGAATTCCCGTGTTCCTTGTGTTAATGATGAAGTCGCAACGTTATGGCTGAACACTGCAGAAGTTAGGGAAGCAATTCATGCAAAACCAGAAAGTGTGGCTGGTCCATGGGAGTTATGCACAGATAGAATAACTTATTCACGCGATGCTGGAAGTATGATCCCTTACCACCAAAACCTTACAACCCAAGGTTATAGAGCACTTATTTTCAGTGGAGACCATGATATGTGTGTTCCGTACACTGGGAGCGAGGCATGGACTGCATCACTTGGGTATAAGATTGTGGATGAATGGAGACCTTGGCTCTCCTCTGACGACCAAGTTGCTGGCTACTTACAAGGATATGCAAACAACCTCACCTTTCTCACCGTCAAGGGAGCTGGACACACTGTCCCGGAATATAAGCCACGGGAGGCACTCGACTTCTTTCAACGCTTTTTGGACGGAAAACCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

405

Amino Acids

45.01

Weight (kDa)

6.0

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25420 AT4G12910 AT4G12910
fragaria_vesca	FvH4_2g17690 FvH4_6g00420 FvH4_6g00420 FvH4_6g00420
malus_domestica	MD00G1170000.v1.1 MD04G1245700.v1.1 MD05G1158200.v1.1 MD10G1151200.v1.1 MD12G1264200.v1.1 MD13G1061200.v1.1
prunus_persica	Prupe.6G362200_v2.0.a1 Prupe.8G189600_v2.0.a1
pyrus_communis	pycom04g21660 pycom05g15020 pycom10g13030 pycom12g23930
rosa_chinensis	RchiOBHm_Chr3g0447751 RchiOBHm_Chr6g0282671
rosa_laevigata	RLG00000002738
rosa_multiflora	Rmu_co8425633.1_g000001 Rmu_ssc0000391.1_g000016
rosa_roxburghii	Rroxscaffold_3G00245270 Rroxscaffold_6G00425950
rosa_rugosa	Rorug02G0605300 Rorug06G0148500 Rorug07G0145800
rosa_samantha	Rh3AG005000 Rh3BG004600 Rh3CG005000 Rh3DG004900 Rh6AG261900 Rh6BG265000 Rh6CG264100 Rh6DG256300 Rh7BG273200
rosa_wichuraiana	Rw3G000370 Rw6G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	900
AclI	AACGTT	1 cut(s)	797
AclWI	GGATC	1 cut(s)	910
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	3 cut(s)	347, 589, 760
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	436, 995
AfiI	CCNNNNNNNGG	1 cut(s)	998
AgsI	TTSAA	4 cut(s)	158, 491, 632, 1187
AhdI	GACNNNNNGTC	1 cut(s)	1145
AjnI	CCWGG	3 cut(s)	318, 568, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	202, 234
AluBI	AGCT	7 cut(s)	425, 518, 558, 615, 627, 745, 1136
AluI	AGCT	7 cut(s)	425, 518, 558, 615, 627, 745, 1136
Alw21I	GWGCWC	1 cut(s)	958
Alw26I	GTCTC	3 cut(s)	16, 966, 1045
AlwI	GGATC	1 cut(s)	910
AoxI	GGCC	5 cut(s)	388, 565, 685, 695, 737
ApeKI	GCWGC	2 cut(s)	250, 612
ApoI	RAATTY	3 cut(s)	347, 589, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	2 cut(s)	486, 831
AspS9I	GGNCC	3 cut(s)	388, 566, 860
AsuC2I	CCSGG	2 cut(s)	88, 1151
AsuHPI	GGTGA	2 cut(s)	1105, 1114
AvaII	GGWCC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	958
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	2 cut(s)	237, 624
BccI	CCATC	3 cut(s)	379, 713, 739
BcgI	CGANNNNNNTGC	4 cut(s)	341, 375, 1061, 1095
BciT130I	CCWGG	3 cut(s)	320, 570, 694
BcnI	CCSGG	2 cut(s)	88, 1151
BcoDI	GTCTC	3 cut(s)	16, 966, 1045
BfaI	CTAG	2 cut(s)	555, 704
BfmI	CTRYAG	1 cut(s)	813
BisI	GCNGC	2 cut(s)	251, 613
BlsI	GCNGC	2 cut(s)	252, 614
Bme1390I	CCNGG	5 cut(s)	88, 320, 570, 694, 1151
Bme18I	GGWCC	1 cut(s)	860
BmeRI	GACNNNNNGTC	1 cut(s)	1145
BmgT120I	GGNCC	3 cut(s)	388, 566, 860
BmrFI	CCNGG	5 cut(s)	88, 320, 570, 694, 1151
BmrI	ACTGGG	1 cut(s)	1008
BmsI	GCATC	3 cut(s)	343, 892, 1028
BmuI	ACTGGG	1 cut(s)	1008
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	2 cut(s)	113, 569
BpuMI	CCSGG	2 cut(s)	88, 1151
BsaI	GGTCTC	2 cut(s)	966, 1045
BsaJI	CCNNGG	7 cut(s)	87, 562, 568, 863, 943, 1055, 1163
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	998
Bse1I	ACTGG	1 cut(s)	1003
BseBI	CCWGG	3 cut(s)	320, 570, 694
BseDI	CCNNGG	7 cut(s)	87, 562, 568, 863, 943, 1055, 1163
BseGI	GGATG	5 cut(s)	93, 390, 648, 684, 1048
BseLI	CCNNNNNNNGG	1 cut(s)	998
BseMII	CTCAG	1 cut(s)	755
BseNI	ACTGG	1 cut(s)	1003
BseRI	GAGGAG	2 cut(s)	116, 1054
BseXI	GCAGC	2 cut(s)	237, 624
Bsh1236I	CGCG	1 cut(s)	900
BshFI	GGCC	5 cut(s)	390, 567, 687, 697, 739
BsiHKAI	GWGCWC	1 cut(s)	958
BsiSI	CCGG	2 cut(s)	87, 1151
BslFI	GGGAC	4 cut(s)	104, 353, 713, 1133
BslI	CCNNNNNNNGG	1 cut(s)	998
BsmAI	GTCTC	3 cut(s)	16, 966, 1045
BsmFI	GGGAC	4 cut(s)	104, 353, 713, 1133
BsnI	GGCC	5 cut(s)	390, 567, 687, 697, 739
Bso31I	GGTCTC	2 cut(s)	966, 1045
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp143I	GATC	1 cut(s)	915
Bsp19I	CCATGG	2 cut(s)	562, 863
BspANI	GGCC	5 cut(s)	390, 567, 687, 697, 739
BspCNI	CTCAG	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	900
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	1 cut(s)	910
BspTNI	GGTCTC	2 cut(s)	966, 1045
BsrI	ACTGG	1 cut(s)	1003
BssECI	CCNNGG	7 cut(s)	87, 562, 568, 863, 943, 1055, 1163
BssMI	GATC	1 cut(s)	915
BssT1I	CCWWGG	4 cut(s)	562, 863, 943, 1055
Bst2UI	CCWGG	3 cut(s)	320, 570, 694
Bst4CI	ACNGT	3 cut(s)	621, 1126, 1147
BstAPI	GCANNNNNTGC	2 cut(s)	836, 1016
BstC8I	GCNNGC	2 cut(s)	747, 1084
BstDEI	CTNAG	1 cut(s)	741
BstDSI	CCRYGG	3 cut(s)	562, 863, 1163
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	5 cut(s)	93, 390, 648, 684, 1048
BstFNI	CGCG	1 cut(s)	900
BstKTI	GATC	1 cut(s)	918
BstMAI	GTCTC	3 cut(s)	16, 966, 1045
BstMBI	GATC	1 cut(s)	915
BstMWI	GCNNNNNNNGC	3 cut(s)	564, 836, 1016
BstNI	CCWGG	3 cut(s)	320, 570, 694
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	5 cut(s)	86, 318, 568, 692, 1149
BstSFI	CTRYAG	1 cut(s)	813
BstUI	CGCG	1 cut(s)	900
BstV1I	GCAGC	2 cut(s)	237, 624
BstXI	CCANNNNNNTGG	2 cut(s)	569, 1082
BsuRI	GGCC	5 cut(s)	390, 567, 687, 697, 739
BtgI	CCRYGG	3 cut(s)	562, 863, 1163
BtgZI	GCGATG	1 cut(s)	915
BtsCI	GGATG	5 cut(s)	93, 390, 648, 684, 1048
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	4 cut(s)	810, 973, 996, 1143
Cac8I	GCNNGC	2 cut(s)	747, 1084
Cfr13I	GGNCC	3 cut(s)	388, 566, 860
CseI	GACGC	1 cut(s)	763
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	435, 994
CviAII	CATG	7 cut(s)	116, 380, 563, 836, 864, 977, 1011
CviQI	GTAC	2 cut(s)	435, 994
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	1 cut(s)	917
DpnII	GATC	1 cut(s)	915
DraI	TTTAAA	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	1145
EaeI	YGGCCR	1 cut(s)	685
Eam1105I	GACNNNNNGTC	1 cut(s)	1145
Eco130I	CCWWGG	4 cut(s)	562, 863, 943, 1055
Eco31I	GGTCTC	2 cut(s)	966, 1045
Eco47I	GGWCC	1 cut(s)	860
Eco57I	CTGAAG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRI	GAATTC	2 cut(s)	589, 760
EcoRII	CCWGG	3 cut(s)	318, 568, 692
EcoT14I	CCWWGG	4 cut(s)	562, 863, 943, 1055
ErhI	CCWWGG	4 cut(s)	562, 863, 943, 1055
FaeI	CATG	7 cut(s)	119, 383, 566, 839, 867, 980, 1014
FaqI	GGGAC	4 cut(s)	104, 353, 713, 1133
FatI	CATG	7 cut(s)	115, 379, 562, 835, 863, 976, 1010
Fnu4HI	GCNGC	2 cut(s)	251, 613
FokI	GGATG	5 cut(s)	80, 397, 655, 691, 1055
Fsp4HI	GCNGC	2 cut(s)	251, 613
FspBI	CTAG	2 cut(s)	555, 704
GluI	GCNGC	2 cut(s)	251, 613
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	5 cut(s)	390, 567, 687, 697, 739
HapII	CCGG	2 cut(s)	87, 1151
HgaI	GACGC	1 cut(s)	763
Hin1II	CATG	7 cut(s)	119, 383, 566, 839, 867, 980, 1014
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	4 cut(s)	32, 185, 198, 333
HpaII	CCGG	2 cut(s)	87, 1151
HphI	GGTGA	2 cut(s)	1105, 1114
Hpy166II	GTNNAC	1 cut(s)	996
Hpy188I	TCNGA	3 cut(s)	309, 400, 1069
Hpy188III	TCNNGA	3 cut(s)	180, 413, 521
Hpy8I	GTNNAC	1 cut(s)	996
HpyAV	CCTTC	2 cut(s)	304, 468
HpyCH4III	ACNGT	3 cut(s)	621, 1126, 1147
HpyCH4IV	ACGT	2 cut(s)	711, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	564, 836, 1016
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	2 cut(s)	711, 797
Hsp92II	CATG	7 cut(s)	119, 383, 566, 839, 867, 980, 1014
Kzo9I	GATC	1 cut(s)	915
LmnI	GCTCC	2 cut(s)	1002, 1133
Lsp1109I	GCAGC	2 cut(s)	237, 624
LweI	GCATC	3 cut(s)	343, 892, 1028
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	2 cut(s)	555, 704
MaeII	ACGT	2 cut(s)	711, 797
MaeIII	GTNAC	2 cut(s)	239, 314
MalI	GATC	1 cut(s)	917
MboI	GATC	1 cut(s)	915
MboII	GAAGA	1 cut(s)	728
MfeI	CAATTG	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	958
MlyI	GAGTC	3 cut(s)	194, 207, 342
MmeI	TCCRAC	1 cut(s)	39
MroXI	GAANNNNTTC	2 cut(s)	486, 831
MseI	TTAA	6 cut(s)	279, 302, 447, 498, 623, 780
MspI	CCGG	2 cut(s)	87, 1151
MspR9I	CCNGG	5 cut(s)	88, 320, 570, 694, 1151
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	3 cut(s)	320, 570, 694
MvnI	CGCG	1 cut(s)	900
MwoI	GCNNNNNNNGC	3 cut(s)	564, 836, 1016
NciI	CCSGG	2 cut(s)	88, 1151
NcoI	CCATGG	2 cut(s)	562, 863
NdeII	GATC	1 cut(s)	915
NlaIII	CATG	7 cut(s)	119, 383, 566, 839, 867, 980, 1014
NmeAIII	GCCGAG	1 cut(s)	713
PdmI	GAANNNNTTC	2 cut(s)	486, 831
PfeI	GAWTC	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	1149
PkrI	GCNGC	2 cut(s)	252, 614
PleI	GAGTC	3 cut(s)	193, 206, 341
PpsI	GAGTC	3 cut(s)	193, 206, 341
Psp1406I	AACGTT	1 cut(s)	797
Psp6I	CCWGG	3 cut(s)	318, 568, 692
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	3 cut(s)	318, 568, 692
PspPI	GGNCC	3 cut(s)	388, 566, 860
PstI	CTGCAG	1 cut(s)	817
RsaI	GTAC	2 cut(s)	436, 995
RsaNI	GTAC	2 cut(s)	435, 994
SaqAI	TTAA	6 cut(s)	279, 302, 447, 498, 623, 780
SatI	GCNGC	2 cut(s)	251, 613
Sau3AI	GATC	1 cut(s)	915
Sau96I	GGNCC	3 cut(s)	388, 566, 860
SchI	GAGTC	3 cut(s)	194, 207, 342
ScrFI	CCNGG	5 cut(s)	88, 320, 570, 694, 1151
SduI	GDGCHC	1 cut(s)	958
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	3 cut(s)	343, 892, 1028
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	860
SmlI	CTYRAG	2 cut(s)	128, 548
SmoI	CTYRAG	2 cut(s)	128, 548
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	2 cut(s)	555, 704
StyD4I	CCNGG	5 cut(s)	86, 318, 568, 692, 1149
StyI	CCWWGG	4 cut(s)	562, 863, 943, 1055
TaaI	ACNGT	3 cut(s)	621, 1126, 1147
TaiI	ACGT	2 cut(s)	714, 800
TaqI	TCGA	2 cut(s)	351, 1176
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	6 cut(s)	279, 302, 447, 498, 623, 780
Tru9I	TTAA	6 cut(s)	279, 302, 447, 498, 623, 780
TscAI	CASTG	4 cut(s)	817, 973, 1003, 1150
TseI	GCWGC	2 cut(s)	250, 612
TspDTI	ATGAA	3 cut(s)	801, 824, 1059
TspGWI	ACGGA	3 cut(s)	540, 981, 1215
TspRI	CASTG	4 cut(s)	817, 973, 1003, 1150
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	3 cut(s)	347, 589, 760
XmnI	GAANNNNTTC	2 cut(s)	486, 831
XspI	CTAG	2 cut(s)	555, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.