Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002596

Physical Location & Seq

Genomic Coordinates Forward (+)

38891659 .. 38892975

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002738

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCACTTTTCCGTCCAGCCACTATTCCAGATGTCTTTGATGGATTCGTCTACGAACATGGGCCTTTCAATTTTGAACAAAAATCAAAAGAAGCATTCCCCACTTTACAGCTTAATCCTTACAGCTGGTCCAAGGTTTCCAACATACTGTATTTGGATTCTCCTGTTGGTGTTGGGTTTTCCTACTTAGAAGACCCAAGCCAATATGTAACCGGGGATCTTCAAACTGCTTCCGACACCCAAGCCTTCCTCCTCAGCTGGTTTAAGCAGTACCCCGAGTTTCTTTCCAATCCTTTTTACATTTTCGGGTATGGGGAGTCTTATGCTGGAGTCTATGTCCCTACTCTTGCCTTTCAAGTTGCCACAGGTATACAAAATGGAACAAAACCAGTTGTAAATCTCAAGGGTTACATGGTGGGGAATGGAATCACAAACACAAACTTTGATGACAATGCTCTTGTCCCTTTTGCTCATGGGATGGCCCTTATTTCAGATCAAATCTATGAGGGAGTTATAGAAGAATGTGGGATCAACTACTCCAACTCATCTACTCCCAAGTGCAATGAGAAACTTCAACTGGTTCGCGAGGCTCTTGGTGGACTAAACAGGTACGATGTACTTGAGCCTTGTTACCACGACCCAGCTGGAACTTATTCAGGAAATGCTACTTCTACAACAACCAAAAGCAGCAACTTACCCTTAAGCTTCCAGCAACTAGGCAAGTCGTCTGAGAAACCTCTCGGAGTTAGGAAGAGGATGTCACTCAATGTTCCATGCTTTAATGATGAAGTAGCAACTAAATGGCTGAACGACCCAGCAGTCAGGGAAGCAATTCATGCCAAGCCTGCAAGTGTGTCTGGCTACTTGCAAGCATATGAAAACGACCTCACCTTTCTGACTGTCAAAGGAGCTGGGCACACCGTTCCTGAATACAAGCCACGAGAGGCACTCGATTTCTACAGCTGCTGGTTGGCAGGAAAACCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

330

Amino Acids

36.38

Weight (kDa)

5.1

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	13 - 281	3.8e-66	Serine carboxypeptidase
Peptidase_S10	PF00450	284 - 325	1.8e-09	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25420 AT4G12910 AT4G12910
fragaria_vesca	FvH4_2g17690 FvH4_6g00420 FvH4_6g00420 FvH4_6g00420
malus_domestica	MD00G1170000.v1.1 MD04G1245700.v1.1 MD05G1158200.v1.1 MD10G1151200.v1.1 MD12G1264200.v1.1 MD13G1061200.v1.1
prunus_persica	Prupe.6G362200_v2.0.a1 Prupe.8G189600_v2.0.a1
pyrus_communis	pycom04g21660 pycom05g15020 pycom10g13030 pycom12g23930
rosa_chinensis	RchiOBHm_Chr3g0447751 RchiOBHm_Chr6g0282671
rosa_laevigata	RLG00000002738
rosa_multiflora	Rmu_co8425633.1_g000001 Rmu_ssc0000391.1_g000016
rosa_roxburghii	Rroxscaffold_3G00245270 Rroxscaffold_6G00425950
rosa_rugosa	Rorug02G0605300 Rorug06G0148500 Rorug07G0145800
rosa_samantha	Rh3AG005000 Rh3BG004600 Rh3CG005000 Rh3DG004900 Rh6AG261900 Rh6BG265000 Rh6CG264100 Rh6DG256300 Rh7BG273200
rosa_wichuraiana	Rw3G000370 Rw6G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	818
AccI	GTMKAC	2 cut(s)	51, 370
AccII	CGCG	1 cut(s)	585
AclWI	GGATC	2 cut(s)	225, 536
AfaI	GTAC	3 cut(s)	272, 611, 618
AflII	CTTAAG	1 cut(s)	700
AgsI	TTSAA	5 cut(s)	70, 77, 224, 356, 575
AluBI	AGCT	7 cut(s)	112, 126, 258, 644, 705, 911, 963
AluI	AGCT	7 cut(s)	112, 126, 258, 644, 705, 911, 963
AlwI	GGATC	2 cut(s)	225, 536
AlwNI	CAGNNNCTG	1 cut(s)	966
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	62, 480
ApeKI	GCWGC	2 cut(s)	687, 963
Asp700I	GAANNNNTTC	2 cut(s)	652, 831
AspS9I	GGNCC	3 cut(s)	62, 129, 481
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	880
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	918
BauI	CACGAG	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	699, 950
BccI	CCATC	2 cut(s)	35, 472
BcnI	CCSGG	1 cut(s)	214
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	1 cut(s)	958
BfrI	CTTAAG	1 cut(s)	700
BisI	GCNGC	2 cut(s)	688, 964
BlsI	GCNGC	2 cut(s)	689, 965
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	62, 129, 481
BmrFI	CCNGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	933, 965
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	386, 641
BpuMI	CCSGG	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	132, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bse1I	ACTGG	2 cut(s)	389, 582
Bse3DI	GCAATG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	132, 213
BseGI	GGATG	2 cut(s)	483, 762
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	2 cut(s)	268, 720
BseNI	ACTGG	2 cut(s)	389, 582
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	2 cut(s)	699, 950
BseYI	CCCAGC	3 cut(s)	640, 814, 911
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	64, 482
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	323, 446
BsmFI	GGGAC	2 cut(s)	323, 446
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	64, 482
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp143I	GATC	3 cut(s)	217, 493, 528
Bsp68I	TCGCGA	1 cut(s)	585
BspANI	GGCC	2 cut(s)	64, 482
BspCNI	CTCAG	2 cut(s)	267, 721
BspFNI	CGCG	1 cut(s)	585
BspPI	GGATC	2 cut(s)	225, 536
BspTI	CTTAAG	1 cut(s)	700
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	389, 582
BssECI	CCNNGG	2 cut(s)	132, 213
BssMI	GATC	3 cut(s)	217, 493, 528
BssNAI	GTATAC	1 cut(s)	371
BssSI	CACGAG	1 cut(s)	939
BssT1I	CCWWGG	1 cut(s)	132
Bst1107I	GTATAC	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	939
Bst4CI	ACNGT	3 cut(s)	150, 901, 922
Bst6I	CTCTTC	1 cut(s)	746
BstAFI	CTTAAG	1 cut(s)	700
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	2 cut(s)	846, 870
BstDEI	CTNAG	3 cut(s)	187, 254, 729
BstF5I	GGATG	2 cut(s)	483, 762
BstFNI	CGCG	1 cut(s)	585
BstKTI	GATC	3 cut(s)	220, 496, 531
BstMBI	GATC	3 cut(s)	217, 493, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	836, 845
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	958
BstSLI	GKGCMC	1 cut(s)	918
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	699, 950
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BstZ17I	GTATAC	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	64, 482
BtsCI	GGATG	2 cut(s)	483, 762
BtuMI	TCGCGA	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	846, 870
CaiI	CAGNNNCTG	1 cut(s)	966
Cfr13I	GGNCC	3 cut(s)	62, 129, 481
Csp6I	GTAC	3 cut(s)	271, 610, 617
CviAII	CATG	5 cut(s)	59, 412, 473, 774, 836
CviQI	GTAC	3 cut(s)	271, 610, 617
DdeI	CTNAG	3 cut(s)	187, 254, 729
DpnI	GATC	3 cut(s)	219, 495, 530
DpnII	GATC	3 cut(s)	217, 493, 528
DrdI	GACNNNNNNGTC	1 cut(s)	818
DseDI	GACNNNNNNGTC	1 cut(s)	818
Eam1104I	CTCTTC	1 cut(s)	746
EarI	CTCTTC	1 cut(s)	746
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	5 cut(s)	62, 415, 476, 777, 839
FaqI	GGGAC	2 cut(s)	323, 446
FatI	CATG	5 cut(s)	58, 411, 472, 773, 835
FauNDI	CATATG	1 cut(s)	874
FblI	GTMKAC	2 cut(s)	51, 370
Fnu4HI	GCNGC	2 cut(s)	688, 964
FokI	GGATG	2 cut(s)	490, 769
Fsp4HI	GCNGC	2 cut(s)	688, 964
FspBI	CTAG	1 cut(s)	716
GluI	GCNGC	2 cut(s)	688, 964
GsaI	CCCAGC	3 cut(s)	644, 818, 915
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	64, 482
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	5 cut(s)	62, 415, 476, 777, 839
HindIII	AAGCTT	1 cut(s)	703
HinfI	GANTC	5 cut(s)	45, 158, 317, 330, 426
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	880
Hpy166II	GTNNAC	3 cut(s)	52, 371, 599
Hpy188I	TCNGA	5 cut(s)	235, 493, 730, 743, 897
Hpy188III	TCNNGA	4 cut(s)	29, 584, 657, 926
Hpy8I	GTNNAC	3 cut(s)	52, 371, 599
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	3 cut(s)	150, 901, 922
HpyCH4V	TGCA	3 cut(s)	561, 848, 868
HpyF10VI	GCNNNNNNNGC	2 cut(s)	836, 845
HpyF3I	CTNAG	3 cut(s)	187, 254, 729
Hsp92II	CATG	5 cut(s)	62, 415, 476, 777, 839
Kzo9I	GATC	3 cut(s)	217, 493, 528
LmnI	GCTCC	1 cut(s)	908
Lsp1109I	GCAGC	2 cut(s)	699, 950
MaeI	CTAG	1 cut(s)	716
MaeIII	GTNAC	4 cut(s)	208, 407, 629, 759
MalI	GATC	3 cut(s)	219, 495, 530
MboI	GATC	3 cut(s)	217, 493, 528
MboII	GAAGA	4 cut(s)	203, 212, 530, 763
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	2 cut(s)	70, 831
MlyI	GAGTC	2 cut(s)	326, 339
MmeI	TCCRAC	3 cut(s)	165, 258, 564
MnlI	CCTC	8 cut(s)	260, 263, 499, 580, 747, 747, 896, 937
MroXI	GAANNNNTTC	2 cut(s)	652, 831
MseI	TTAA	4 cut(s)	114, 264, 701, 780
MspA1I	CMGCKG	4 cut(s)	126, 258, 644, 963
MspCI	CTTAAG	1 cut(s)	700
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	214
Mva1269I	GAATGC	1 cut(s)	95
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	2 cut(s)	836, 845
NciI	CCSGG	1 cut(s)	214
NdeI	CATATG	1 cut(s)	874
NdeII	GATC	3 cut(s)	217, 493, 528
NlaIII	CATG	5 cut(s)	62, 415, 476, 777, 839
NmuCI	GTSAC	1 cut(s)	759
NruI	TCGCGA	1 cut(s)	585
PctI	GAATGC	1 cut(s)	95
PdmI	GAANNNNTTC	2 cut(s)	652, 831
PfeI	GAWTC	3 cut(s)	45, 158, 426
PkrI	GCNGC	2 cut(s)	689, 965
PleI	GAGTC	2 cut(s)	325, 338
PpsI	GAGTC	2 cut(s)	325, 338
PspFI	CCCAGC	3 cut(s)	640, 814, 911
PspPI	GGNCC	3 cut(s)	62, 129, 481
PstNI	CAGNNNCTG	1 cut(s)	966
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	4 cut(s)	126, 258, 644, 963
RruI	TCGCGA	1 cut(s)	585
RsaI	GTAC	3 cut(s)	272, 611, 618
RsaNI	GTAC	3 cut(s)	271, 610, 617
SaqAI	TTAA	4 cut(s)	114, 264, 701, 780
SatI	GCNGC	2 cut(s)	688, 964
Sau3AI	GATC	3 cut(s)	217, 493, 528
Sau96I	GGNCC	3 cut(s)	62, 129, 481
SchI	GAGTC	2 cut(s)	326, 339
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	918
SfcI	CTRYAG	1 cut(s)	958
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	3 cut(s)	401, 620, 700
SmoI	CTYRAG	3 cut(s)	401, 620, 700
Sse9I	AATT	2 cut(s)	70, 831
SspMI	CTAG	1 cut(s)	716
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	150, 901, 922
TaqI	TCGA	1 cut(s)	951
TasI	AATT	2 cut(s)	70, 831
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	3 cut(s)	45, 158, 426
Tru1I	TTAA	4 cut(s)	114, 264, 701, 780
Tru9I	TTAA	4 cut(s)	114, 264, 701, 780
TseFI	GTSAC	1 cut(s)	759
TseI	GCWGC	2 cut(s)	687, 963
Tsp45I	GTSAC	1 cut(s)	759
TspDTI	ATGAA	3 cut(s)	801, 824, 891
Vha464I	CTTAAG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	2 cut(s)	51, 370
XmnI	GAANNNNTTC	2 cut(s)	652, 831
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.