Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002596

Physical Location & Seq

Genomic Coordinates Reverse (-)

18566757 .. 18568391

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15020.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGACTGATATCAGATGATCTATATGAGGAGGTTAACACAGCGTGTGGAGGAAACTACATTGATCCGGTGATCGATCCTTGTGGGAGCAAGCTTGAAAAAGTTGACAAGAACATCGACGGTTTGAACATATATGACATTCTGGAACCATGCTATCACAGCACAGATTCGAGTAAGATTAGAAGAGTTACAAACAGTGGATTGCCATCTAGCTTTCGCCGATTAGGTGAGACTGAAAGGCCTCTTGCTGTGAGAAAAAGGATGTTTGGTCGTGCCTGGCCTCTTAGAGCTCCTGTGAGAGATGGTATTGTTCCAACTTGGCCGGAGCTGATGAATAGCGAAGAGGTTCCGTGTACTGATGATGAGGTTGCTACTGAATGGTTGAACAACGAAACAGTTAGGAAGGCAATCCATGCAGAAACGGATCCTTCATGGGAATTATGCACAAGCAGAATCAGATTTTATCATGATTCTGGAAGTATGATCAAGTACCACAGGAACCTCACCGCTAAGGGTTATCGGGCACTTATATTTAGCGGTGATCATGATATGTGTGTTCCTTTCACCGGGAGCCAAGCATGGACCAGATCACTTGGTTATAAGATTGTGGACGAATGGAGGCCATGGACTTCGAATGGACAAGTTGCTGGGTATACACAGGCTTACGAGAACAACCTCACCTTTCTAACCGTAAAGGGATCTGGACATACAGTTCCGGAGTACAAACCACGAGAGGCGTTAGATTTATTTAGCCGGTTTTTGGCCGGAAAACCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

260

Amino Acids

29.39

Weight (kDa)

5.91

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25420 AT4G12910 AT4G12910
fragaria_vesca	FvH4_2g17690 FvH4_6g00420 FvH4_6g00420 FvH4_6g00420
malus_domestica	MD00G1170000.v1.1 MD04G1245700.v1.1 MD05G1158200.v1.1 MD10G1151200.v1.1 MD12G1264200.v1.1 MD13G1061200.v1.1
prunus_persica	Prupe.6G362200_v2.0.a1 Prupe.8G189600_v2.0.a1
pyrus_communis	pycom04g21660 pycom05g15020 pycom10g13030 pycom12g23930
rosa_chinensis	RchiOBHm_Chr3g0447751 RchiOBHm_Chr6g0282671
rosa_laevigata	RLG00000002738
rosa_multiflora	Rmu_co8425633.1_g000001 Rmu_ssc0000391.1_g000016
rosa_roxburghii	Rroxscaffold_3G00245270 Rroxscaffold_6G00425950
rosa_rugosa	Rorug02G0605300 Rorug06G0148500 Rorug07G0145800
rosa_samantha	Rh3AG005000 Rh3BG004600 Rh3CG005000 Rh3DG004900 Rh6AG261900 Rh6BG265000 Rh6CG264100 Rh6DG256300 Rh7BG273200
rosa_wichuraiana	Rw3G000370 Rw6G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccI	GTMKAC	1 cut(s)	653
AccIII	TCCGGA	1 cut(s)	715
AciI	CCGC	2 cut(s)	507, 537
AclWI	GGATC	5 cut(s)	59, 71, 419, 432, 706
AcoI	YGGCCR	2 cut(s)	320, 762
AdeI	CACNNNGTG	1 cut(s)	45
AfaI	GTAC	3 cut(s)	355, 491, 722
AfiI	CCNNNNNNNGG	2 cut(s)	566, 760
AgsI	TTSAA	3 cut(s)	98, 127, 385
AjnI	CCWGG	1 cut(s)	275
AloI	GAACNNNNNNTCC	2 cut(s)	696, 728
AluBI	AGCT	4 cut(s)	94, 213, 290, 328
AluI	AGCT	4 cut(s)	94, 213, 290, 328
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	5 cut(s)	59, 71, 419, 432, 706
Aor13HI	TCCGGA	1 cut(s)	715
AoxI	GGCC	5 cut(s)	239, 278, 320, 620, 762
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	582
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	6 cut(s)	82, 239, 496, 551, 556, 670
AsuII	TTCGAA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	292
BccI	CCATC	2 cut(s)	214, 296
BciT130I	CCWGG	1 cut(s)	277
BclI	TGATCA	2 cut(s)	483, 541
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	277, 568
Bme18I	GGWCC	1 cut(s)	582
BmgT120I	GGNCC	1 cut(s)	582
BmiI	GGNNCC	5 cut(s)	147, 348, 426, 500, 572
BmrFI	CCNGG	2 cut(s)	277, 568
Bpu10I	CCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	568
Bsa29I	ATCGAT	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	623
BsaWI	WCCGGW	2 cut(s)	67, 715
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 760
Bse118I	RCCGGY	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	205
BseAI	TCCGGA	1 cut(s)	715
BseBI	CCWGG	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	623
BseGI	GGATG	1 cut(s)	267
BseJI	GATNNNNATC	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	566, 760
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	526
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	5 cut(s)	241, 280, 322, 622, 764
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	6 cut(s)	68, 323, 567, 716, 754, 765
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	566, 760
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	241, 280, 322, 622, 764
Bsp119I	TTCGAA	1 cut(s)	632
Bsp1286I	GDGCHC	2 cut(s)	292, 526
Bsp13I	TCCGGA	1 cut(s)	715
Bsp143I	GATC	9 cut(s)	19, 64, 72, 76, 424, 483, 541, 587, 698
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	2 cut(s)	507, 537
BspANI	GGCC	5 cut(s)	241, 280, 322, 622, 764
BspDI	ATCGAT	1 cut(s)	75
BspEI	TCCGGA	1 cut(s)	715
BspHI	TCATGA	2 cut(s)	466, 544
BspLI	GGNNCC	5 cut(s)	147, 348, 426, 500, 572
BspPI	GGATC	5 cut(s)	59, 71, 419, 432, 706
BspT104I	TTCGAA	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	753
BssAI	RCCGGY	1 cut(s)	753
BssECI	CCNNGG	1 cut(s)	623
BssMI	GATC	9 cut(s)	19, 64, 72, 76, 424, 483, 541, 587, 698
BssNAI	GTATAC	1 cut(s)	654
BssSI	CACGAG	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	623
Bst1107I	GTATAC	1 cut(s)	654
Bst2BI	CACGAG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	5 cut(s)	122, 197, 397, 691, 712
Bst6I	CTCTTC	2 cut(s)	178, 336
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	284, 510
BstDSI	CCRYGG	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	9 cut(s)	22, 67, 75, 79, 427, 486, 544, 590, 701
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	9 cut(s)	19, 64, 72, 76, 424, 483, 541, 587, 698
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 413
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	275, 566
BstSLI	GKGCMC	1 cut(s)	526
BstX2I	RGATCY	2 cut(s)	424, 698
BstYI	RGATCY	2 cut(s)	424, 698
BstZ17I	GTATAC	1 cut(s)	654
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	5 cut(s)	241, 280, 322, 622, 764
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	92
CciI	TCATGA	2 cut(s)	466, 544
Cfr10I	RCCGGY	1 cut(s)	753
Cfr13I	GGNCC	1 cut(s)	582
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	354, 490, 721
CviAII	CATG	7 cut(s)	150, 413, 432, 467, 545, 579, 624
CviQI	GTAC	3 cut(s)	354, 490, 721
DdeI	CTNAG	2 cut(s)	284, 510
DpnI	GATC	9 cut(s)	21, 66, 74, 78, 426, 485, 543, 589, 700
DpnII	GATC	9 cut(s)	19, 64, 72, 76, 424, 483, 541, 587, 698
DraIII	CACNNNGTG	1 cut(s)	45
EaeI	YGGCCR	2 cut(s)	320, 762
Eam1104I	CTCTTC	2 cut(s)	178, 336
EarI	CTCTTC	2 cut(s)	178, 336
Ecl136II	GAGCTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	623
Eco147I	AGGCCT	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	7 cut(s)	153, 416, 435, 470, 548, 582, 627
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	7 cut(s)	149, 412, 431, 466, 544, 578, 623
FbaI	TGATCA	2 cut(s)	483, 541
FblI	GTMKAC	1 cut(s)	653
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	651
HaeIII	GGCC	5 cut(s)	241, 280, 322, 622, 764
HapII	CCGG	6 cut(s)	68, 323, 567, 716, 754, 765
Hin1II	CATG	7 cut(s)	153, 416, 435, 470, 548, 582, 627
HincII	GTYRAC	2 cut(s)	37, 106
HindII	GTYRAC	2 cut(s)	37, 106
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	3 cut(s)	167, 453, 470
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	6 cut(s)	68, 323, 567, 716, 754, 765
HphI	GGTGA	6 cut(s)	82, 239, 496, 551, 556, 670
Hpy166II	GTNNAC	5 cut(s)	37, 106, 354, 610, 654
Hpy188I	TCNGA	2 cut(s)	16, 458
Hpy188III	TCNNGA	6 cut(s)	143, 467, 474, 545, 702, 716
Hpy8I	GTNNAC	5 cut(s)	37, 106, 354, 610, 654
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	397, 438
HpyCH4III	ACNGT	5 cut(s)	122, 197, 397, 691, 712
HpyCH4V	TGCA	2 cut(s)	416, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 413
HpyF3I	CTNAG	2 cut(s)	284, 510
Hsp92II	CATG	7 cut(s)	153, 416, 435, 470, 548, 582, 627
Kpn2I	TCCGGA	1 cut(s)	715
Ksp22I	TGATCA	2 cut(s)	483, 541
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	9 cut(s)	19, 64, 72, 76, 424, 483, 541, 587, 698
LmnI	GCTCC	4 cut(s)	87, 295, 325, 570
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	9 cut(s)	21, 66, 74, 78, 426, 485, 543, 589, 700
MboI	GATC	9 cut(s)	19, 64, 72, 76, 424, 483, 541, 587, 698
MboII	GAAGA	2 cut(s)	195, 353
MflI	RGATCY	2 cut(s)	424, 698
MhlI	GDGCHC	2 cut(s)	292, 526
MluCI	AATT	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	338
MroI	TCCGGA	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	36
MspI	CCGG	6 cut(s)	68, 323, 567, 716, 754, 765
MspR9I	CCNGG	2 cut(s)	277, 568
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	159, 413
NciI	CCSGG	1 cut(s)	568
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	9 cut(s)	19, 64, 72, 76, 424, 483, 541, 587, 698
NlaIII	CATG	7 cut(s)	153, 416, 435, 470, 548, 582, 627
NlaIV	GGNNCC	5 cut(s)	147, 348, 426, 500, 572
NspV	TTCGAA	1 cut(s)	632
PagI	TCATGA	2 cut(s)	466, 544
PceI	AGGCCT	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	167, 453, 470
PsiI	TTATAA	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	5 cut(s)	147, 348, 426, 500, 572
PspPI	GGNCC	1 cut(s)	582
PsuI	RGATCY	2 cut(s)	424, 698
RsaI	GTAC	3 cut(s)	355, 491, 722
RsaNI	GTAC	3 cut(s)	354, 490, 721
SacI	GAGCTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	9 cut(s)	19, 64, 72, 76, 424, 483, 541, 587, 698
Sau96I	GGNCC	1 cut(s)	582
ScrFI	CCNGG	2 cut(s)	277, 568
SduI	GDGCHC	2 cut(s)	292, 526
SfuI	TTCGAA	1 cut(s)	632
SinI	GGWCC	1 cut(s)	582
Sse9I	AATT	1 cut(s)	437
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	507, 537
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	292
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	275, 566
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	5 cut(s)	122, 197, 397, 691, 712
TaqI	TCGA	4 cut(s)	75, 117, 170, 632
TasI	AATT	1 cut(s)	437
TatI	WGTACW	2 cut(s)	353, 720
TfiI	GAWTC	3 cut(s)	167, 453, 470
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	347, 420
TspGWI	ACGGA	2 cut(s)	339, 437
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.