Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Forward (+)

16103257 .. 16106629

Gene Structure 3373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1075300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTGGCTACTGAGATCACAGAAGACTACAATCTACAGCTCACTCCCACACTGCAATCTCCCTCAGTCACCCCCATCGTCCTCGTCCCCAACAAATTCCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCACATTTACACCTTTTCCTGCCTTTTATTATTAACTCCAACAGCTCCACCATCCCCTGCTCTCTCTCTCCTCTTTCTCTCTCTAGACACCACAAGAAAAGTGGAGCAACAACAACAACTACAAGCATTAACAAACAAAAAAACCTAGAGCTTGATCTAGAGCTAGAGCTACACTCTCACACATTTCACAATGCCACAACCATAACCATTGAATTAAGCAGCTTTTCAACCTTAAAGCTTCAATCTTTCACCCATTTTCTCTCACTCCTTCTCAAATCCGCCATGGGAACCTGCACTTCGAAACCTCCAAAGCAGAACCCATATTCCCCCAGAGACCCAATTGACCCAAACAATCCTTCCCAAACCCCCAAATCACTCCCATCCCACACCCCTCACCAAAAAGACGACGTCGCTTCACGGCAGTCCCACTCCCAGTCCCCCTTCTACCCCTTCTACAGTCCCAGCCCCGCCCATTACCTCAAGAAGTCGTCACCGGCGCGGAGCAAGAGCGCAACTTCCACTCCCAGCCGGTTTTTCCGGCGACCCTTTCCGCCTCCGTCGCCGGCGAAGCACATCAAGGCCGTGCTGGCACGGCGTCTGGGCAAAAAGGCATCGGCTTCGGTGGCGATACCGGAGGACGGAGAGGAGGAAGATGGGGTTGAGCTGGACAAGAGGTTTGGGTTCTCCAAGGAGGTTACGAGTCGATTGGAGGTTGGGGACGAATTGGGTCGAGGGCATTTTGGGTATACTTGCTCTGCTAGGTACAAAAAGGGGGAGTTTAAGGGTCAACAGGTCGCTGTGAAAGTCATCCCTAAAACAAAGATGACAACTGCTATTGCAATCGAGGATGTGAGAAGGGAGGTCAAGATCTTGCAAGCCTTGACTGGACATAGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

345

Amino Acids

37.92

Weight (kDa)

9.77

Isoelectric Point (pI)

69.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	546
Acc36I	ACCTGC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	881
AccII	CGCG	1 cut(s)	634
AciI	CCGC	4 cut(s)	414, 603, 634, 686
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	2 cut(s)	543, 730
AfaI	GTAC	1 cut(s)	899
AfiI	CCNNNNNNNGG	1 cut(s)	773
AgsI	TTSAA	3 cut(s)	347, 363, 377
AjuI	GAANNNNNNNTTGG	2 cut(s)	475, 507
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	8 cut(s)	39, 180, 286, 298, 304, 357, 373, 799
AluI	AGCT	8 cut(s)	39, 180, 286, 298, 304, 357, 373, 799
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	462
Alw44I	GTGCAC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	714
ApaLI	GTGCAC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
AspLEI	GCGC	2 cut(s)	634, 647
AsuHPI	GGTGA	4 cut(s)	60, 376, 521, 618
AsuII	TTCGAA	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	4 cut(s)	82, 194, 523, 782
BceAI	ACGGC	3 cut(s)	569, 701, 743
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	5 cut(s)	219, 281, 293, 299, 894
BfmI	CTRYAG	2 cut(s)	34, 589
BfuAI	ACCTGC	1 cut(s)	434
BglI	GCCNNNNNGGC	1 cut(s)	722
BglII	AGATCT	1 cut(s)	1002
BisI	GCNGC	1 cut(s)	355
BlsI	GCNGC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	424
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	755
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
Bpu14I	TTCGAA	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	599
BsaHI	GRCGYC	2 cut(s)	543, 730
BsaI	GGTCTC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	417, 822
BsaWI	WCCGGW	1 cut(s)	766
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	773
Bse118I	RCCGGY	3 cut(s)	628, 663, 697
Bse1I	ACTGG	2 cut(s)	568, 1024
BseDI	CCNNGG	2 cut(s)	417, 822
BseGI	GGATG	4 cut(s)	186, 515, 942, 988
BseLI	CCNNNNNNNGG	1 cut(s)	773
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	568, 1024
BseRI	GAGGAG	2 cut(s)	195, 794
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	366
BseYI	CCCAGC	2 cut(s)	596, 659
BsgI	GTGCAG	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	716
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	5 cut(s)	629, 664, 673, 698, 767
BslFI	GGGAC	5 cut(s)	70, 544, 556, 579, 866
BslI	CCNNNNNNNGG	1 cut(s)	773
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	5 cut(s)	70, 544, 556, 579, 866
BsnI	GGCC	1 cut(s)	716
Bso31I	GGTCTC	1 cut(s)	462
Bsp119I	TTCGAA	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	14, 289, 1002
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	4 cut(s)	414, 603, 634, 686
BspANI	GGCC	1 cut(s)	716
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	434
BspT104I	TTCGAA	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	462
BsrFI	RCCGGY	3 cut(s)	628, 663, 697
BsrI	ACTGG	2 cut(s)	568, 1024
BssAI	RCCGGY	3 cut(s)	628, 663, 697
BssECI	CCNNGG	2 cut(s)	417, 822
BssMI	GATC	3 cut(s)	14, 289, 1002
BssNAI	GTATAC	1 cut(s)	882
BssNI	GRCGYC	2 cut(s)	543, 730
BssT1I	CCWWGG	2 cut(s)	417, 822
Bst1107I	GTATAC	1 cut(s)	882
Bst4CI	ACNGT	1 cut(s)	593
BstACI	GRCGYC	2 cut(s)	543, 730
BstBI	TTCGAA	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	699, 723, 1011
BstDEI	CTNAG	2 cut(s)	11, 63
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	4 cut(s)	186, 515, 942, 988
BstFNI	CGCG	1 cut(s)	634
BstHHI	GCGC	2 cut(s)	634, 647
BstKTI	GATC	3 cut(s)	17, 292, 1005
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	14, 289, 1002
BstMWI	GCNNNNNNNGC	5 cut(s)	694, 703, 722, 727, 758
BstSFI	CTRYAG	2 cut(s)	34, 589
BstSLI	GKGCMC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	634
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	1002
BstYI	RGATCY	1 cut(s)	1002
BstZ17I	GTATAC	1 cut(s)	882
BsuRI	GGCC	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	4 cut(s)	186, 515, 942, 988
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	3 cut(s)	699, 723, 1011
CfoI	GCGC	2 cut(s)	634, 647
Cfr10I	RCCGGY	3 cut(s)	628, 663, 697
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	1 cut(s)	898
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	1 cut(s)	898
DdeI	CTNAG	2 cut(s)	11, 63
DpnI	GATC	3 cut(s)	16, 291, 1004
DpnII	GATC	3 cut(s)	14, 289, 1002
EciI	GGCGGA	2 cut(s)	403, 675
Eco130I	CCWWGG	2 cut(s)	417, 822
Eco31I	GGTCTC	1 cut(s)	462
EcoT14I	CCWWGG	2 cut(s)	417, 822
ErhI	CCWWGG	2 cut(s)	417, 822
FaeI	CATG	1 cut(s)	421
FaiI	YATR	5 cut(s)	338, 419, 457, 882, 1026
FaqI	GGGAC	5 cut(s)	70, 544, 556, 579, 866
FatI	CATG	1 cut(s)	417
FauI	CCCGC	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	881
Fnu4HI	GCNGC	1 cut(s)	355
FokI	GGATG	4 cut(s)	173, 502, 929, 995
Fsp4HI	GCNGC	1 cut(s)	355
FspBI	CTAG	5 cut(s)	219, 281, 293, 299, 894
GlaI	GCGC	2 cut(s)	633, 646
GluI	GCNGC	1 cut(s)	355
GsaI	CCCAGC	2 cut(s)	600, 663
HaeIII	GGCC	1 cut(s)	716
HapII	CCGG	5 cut(s)	629, 664, 673, 698, 767
HgaI	GACGC	1 cut(s)	719
HhaI	GCGC	2 cut(s)	634, 647
Hin1I	GRCGYC	2 cut(s)	543, 730
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	2 cut(s)	632, 645
HinP1I	GCGC	2 cut(s)	632, 645
HincII	GTYRAC	1 cut(s)	923
HindII	GTYRAC	1 cut(s)	923
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	1 cut(s)	835
HpaII	CCGG	5 cut(s)	629, 664, 673, 698, 767
HphI	GGTGA	4 cut(s)	60, 376, 521, 618
Hpy166II	GTNNAC	3 cut(s)	137, 882, 923
Hpy188III	TCNNGA	4 cut(s)	219, 293, 616, 1000
Hpy8I	GTNNAC	3 cut(s)	137, 882, 923
Hpy99I	CGWCG	3 cut(s)	545, 548, 697
HpyAV	CCTTC	5 cut(s)	413, 501, 586, 595, 984
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	5 cut(s)	54, 137, 429, 974, 1009
HpyF10VI	GCNNNNNNNGC	5 cut(s)	694, 703, 722, 727, 758
HpyF3I	CTNAG	2 cut(s)	11, 63
HpySE526I	ACGT	1 cut(s)	543
Hsp92I	GRCGYC	2 cut(s)	543, 730
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	2 cut(s)	632, 645
KroI	GCCGGC	1 cut(s)	697
KroNI	GCCGGC	1 cut(s)	699
Kzo9I	GATC	3 cut(s)	14, 289, 1002
LmnI	GCTCC	3 cut(s)	185, 239, 636
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	755
MaeI	CTAG	5 cut(s)	219, 281, 293, 299, 894
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	3 cut(s)	66, 624, 829
MalI	GATC	3 cut(s)	16, 291, 1004
MboI	GATC	3 cut(s)	14, 289, 1002
MboII	GAAGA	2 cut(s)	34, 797
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	1002
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	5 cut(s)	94, 347, 474, 857, 1030
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	1 cut(s)	198
MreI	CGCCGGCG	1 cut(s)	697
MroNI	GCCGGC	1 cut(s)	697
MseI	TTAA	5 cut(s)	168, 264, 350, 368, 915
MspI	CCGG	5 cut(s)	629, 664, 673, 698, 767
MunI	CAATTG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	5 cut(s)	694, 703, 722, 727, 758
NaeI	GCCGGC	1 cut(s)	699
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	14, 289, 1002
NgoMIV	GCCGGC	1 cut(s)	697
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	2 cut(s)	66, 624
NspV	TTCGAA	1 cut(s)	434
PdiI	GCCGGC	1 cut(s)	699
PflFI	GACNNNGTC	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	356
PleI	GAGTC	1 cut(s)	843
PpsI	GAGTC	1 cut(s)	843
PspFI	CCCAGC	2 cut(s)	596, 659
PspN4I	GGNNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	1002
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	1 cut(s)	899
RsaNI	GTAC	1 cut(s)	898
SaqAI	TTAA	5 cut(s)	168, 264, 350, 368, 915
SatI	GCNGC	1 cut(s)	355
Sau3AI	GATC	3 cut(s)	14, 289, 1002
SchI	GAGTC	1 cut(s)	844
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	755
SfcI	CTRYAG	2 cut(s)	34, 589
SfuI	TTCGAA	1 cut(s)	434
SgrAI	CRCCGGYG	2 cut(s)	628, 697
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	5 cut(s)	94, 347, 474, 857, 1030
SsiI	CCGC	4 cut(s)	414, 603, 634, 686
SspMI	CTAG	5 cut(s)	219, 281, 293, 299, 894
StyI	CCWWGG	2 cut(s)	417, 822
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	4 cut(s)	434, 838, 865, 978
TasI	AATT	5 cut(s)	94, 347, 474, 857, 1030
Tru1I	TTAA	5 cut(s)	168, 264, 350, 368, 915
Tru9I	TTAA	5 cut(s)	168, 264, 350, 368, 915
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	2 cut(s)	66, 624
TseI	GCWGC	1 cut(s)	354
Tsp45I	GTSAC	2 cut(s)	66, 624
TspGWI	ACGGA	2 cut(s)	681, 789
TspRI	CASTG	1 cut(s)	56
Tth111I	GACNNNGTC	1 cut(s)	542
VneI	GTGCAC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	94
XbaI	TCTAGA	2 cut(s)	218, 292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	881
XspI	CTAG	5 cut(s)	219, 281, 293, 299, 894
ZraI	GACGTC	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.