Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Forward (+)

54931509 .. 54933858

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCCCCTCCCAAGACCCCATATTCCAACCCAGTCTTCCTTCCGCTTCTCTCCCTCCGACGCCCTCCTCGCCGACAAAGCAATCACCTACCTCAAGCGCCACCCCCACAACCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTACTCCTCAAGTCCCAATTCGACCAAACCCTAACCCTAAAGTTCCTCAATTGGGCTCGCAACACCGTCGAAGACAAGGGCAATTTGGTCTTTCAGTGCCTCACTGACTCGCTGCAGGTCTGCAATTCCCGCTCGGCGGTTTTCGACTTGGCCCTAACGAAAAATGCTACAGACGGAATGAAGGAGTCTCGCATTCCTGATCTTATTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTAAGGAGTTCTGTGCAGCCGCACTAAGTGTACATCAGCTTGAGGCACTTGATCGTTGGGAACAACATGCTCGATGTGCATATGAACTTTTCGAGAAGGATGGAAACAGGGCCATTGTCATTGAAGAACTTGCTTCAGAACTTGGGCTTGGTCCCTCCATTCGATTACATGTGGTTTTCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCACGGTGTGTCCAGCCGGACGTTTGTGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

225

Amino Acids

25.32

Weight (kDa)

8.29

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	5 cut(s)	43, 147, 286, 293, 420
AcuI	CTGAAG	2 cut(s)	162, 519
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	2 cut(s)	428, 646
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	208, 292
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	2 cut(s)	383, 524
AjuI	GAANNNNNNNTTGG	4 cut(s)	19, 51, 531, 563
AluBI	AGCT	2 cut(s)	439, 615
AluI	AGCT	2 cut(s)	439, 615
Alw26I	GTCTC	1 cut(s)	348
AoxI	GGCC	2 cut(s)	306, 510
ApeKI	GCWGC	2 cut(s)	268, 416
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	3 cut(s)	307, 510, 551
AsuHPI	GGTGA	2 cut(s)	76, 127
AvaII	GGWCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	214
BbsI	GAAGAC	2 cut(s)	27, 234
BbvI	GCAGC	2 cut(s)	255, 428
BccI	CCATC	2 cut(s)	494, 596
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BcoDI	GTCTC	1 cut(s)	348
BfmI	CTRYAG	2 cut(s)	269, 324
BfoI	RGCGCY	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	4 cut(s)	147, 269, 417, 420
BlsI	GCNGC	4 cut(s)	148, 270, 418, 421
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	3 cut(s)	307, 510, 551
BmiI	GGNNCC	1 cut(s)	553
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	25
BpiI	GAAGAC	2 cut(s)	27, 234
BpuEI	CTTGAG	3 cut(s)	77, 149, 461
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 292
Bse1I	ACTGG	2 cut(s)	31, 590
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	2 cut(s)	208, 292
BseNI	ACTGG	2 cut(s)	31, 590
BseRI	GAGGAG	2 cut(s)	56, 152
BseXI	GCAGC	2 cut(s)	255, 428
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	308, 512
BsiSI	CCGG	1 cut(s)	655
BslFI	GGGAC	2 cut(s)	154, 537
BslI	CCNNNNNNNGG	2 cut(s)	208, 292
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	2 cut(s)	154, 537
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	308, 512
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	355, 451
BspACI	CCGC	5 cut(s)	43, 147, 286, 293, 420
BspANI	GGCC	2 cut(s)	308, 512
BspLI	GGNNCC	1 cut(s)	553
BspMAI	CTGCAG	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	288
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	31, 590
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	2 cut(s)	355, 451
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	223, 644
Bst6I	CTCTTC	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	425, 611, 672
BstF5I	GGATG	1 cut(s)	505
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	358, 454
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	2 cut(s)	355, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 77, 285, 476
BstNSI	RCATGY	2 cut(s)	470, 572
BstSFI	CTRYAG	2 cut(s)	269, 324
BstV1I	GCAGC	2 cut(s)	255, 428
BstV2I	GAAGAC	2 cut(s)	27, 234
BsuRI	GGCC	2 cut(s)	308, 512
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	3 cut(s)	257, 258, 597
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	307, 510, 551
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	3 cut(s)	467, 569, 581
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	3 cut(s)	425, 611, 672
DpnI	GATC	2 cut(s)	357, 453
DpnII	GATC	2 cut(s)	355, 451
DraIII	CACNNNGTG	2 cut(s)	428, 646
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	162, 519
EcoT14I	CCWWGG	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	619
FaeI	CATG	3 cut(s)	470, 572, 584
FaiI	YATR	6 cut(s)	21, 468, 481, 483, 570, 582
FaqI	GGGAC	2 cut(s)	154, 537
FatI	CATG	3 cut(s)	466, 568, 580
FauI	CCCGC	1 cut(s)	293
FauNDI	CATATG	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	147, 269, 417, 420
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	147, 269, 417, 420
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	4 cut(s)	147, 269, 417, 420
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	308, 512
HapII	CCGG	1 cut(s)	655
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	470, 572, 584
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	613
HinfI	GANTC	2 cut(s)	263, 341
HpaII	CCGG	1 cut(s)	655
HphI	GGTGA	2 cut(s)	76, 127
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	2 cut(s)	58, 538
Hpy188III	TCNNGA	2 cut(s)	353, 493
Hpy8I	GTNNAC	1 cut(s)	431
Hpy99I	CGWCG	2 cut(s)	62, 227
HpyAV	CCTTC	4 cut(s)	49, 331, 490, 661
HpyCH4III	ACNGT	2 cut(s)	223, 644
HpyCH4IV	ACGT	1 cut(s)	659
HpyCH4V	TGCA	7 cut(s)	271, 279, 365, 377, 416, 479, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 77, 285, 476
HpyF3I	CTNAG	3 cut(s)	425, 611, 672
HpySE526I	ACGT	1 cut(s)	659
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	470, 572, 584
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	355, 451
LpnPI	CCDG	9 cut(s)	44, 153, 166, 257, 366, 493, 571, 664, 668
Lsp1109I	GCAGC	2 cut(s)	255, 428
LweI	GCATC	1 cut(s)	374
MaeII	ACGT	1 cut(s)	659
MalI	GATC	2 cut(s)	357, 453
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	2 cut(s)	355, 451
MboII	GAAGA	5 cut(s)	27, 117, 239, 402, 536
MfeI	CAATTG	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	5 cut(s)	173, 205, 238, 280, 632
MlyI	GAGTC	2 cut(s)	257, 350
MmeI	TCCRAC	2 cut(s)	50, 81
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	600
MspI	CCGG	1 cut(s)	655
MunI	CAATTG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	68, 77, 285, 476
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	2 cut(s)	355, 451
NlaIII	CATG	3 cut(s)	470, 572, 584
NlaIV	GGNNCC	1 cut(s)	553
NmeAIII	GCCGAG	1 cut(s)	269
NspI	RCATGY	2 cut(s)	470, 572
PciI	ACATGT	1 cut(s)	568
PctI	GAATGC	1 cut(s)	348
PkrI	GCNGC	4 cut(s)	148, 270, 418, 421
PleI	GAGTC	2 cut(s)	257, 349
PpsI	GAGTC	2 cut(s)	257, 349
PscI	ACATGT	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	3 cut(s)	307, 510, 551
PstI	CTGCAG	1 cut(s)	273
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	4 cut(s)	147, 269, 417, 420
Sau3AI	GATC	2 cut(s)	355, 451
Sau96I	GGNCC	3 cut(s)	307, 510, 551
SchI	GAGTC	2 cut(s)	257, 350
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	7 cut(s)	89, 93, 114, 276, 441, 617, 662
SfaNI	GCATC	1 cut(s)	374
SfcI	CTRYAG	2 cut(s)	269, 324
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	3 cut(s)	92, 164, 440
SmoI	CTYRAG	3 cut(s)	92, 164, 440
Sse9I	AATT	5 cut(s)	173, 205, 238, 280, 632
SsiI	CCGC	5 cut(s)	43, 147, 286, 293, 420
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	2 cut(s)	223, 644
TaiI	ACGT	1 cut(s)	662
TaqI	TCGA	6 cut(s)	177, 225, 300, 472, 492, 562
TasI	AATT	5 cut(s)	173, 205, 238, 280, 632
TatI	WGTACW	1 cut(s)	430
TauI	GCSGC	2 cut(s)	149, 422
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	3 cut(s)	257, 265, 604
TseI	GCWGC	2 cut(s)	268, 416
TspDTI	ATGAA	2 cut(s)	350, 498
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	3 cut(s)	257, 265, 604
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	2 cut(s)	470, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.