Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8233831.1

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 761

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8233831.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 374 bp

acgtggctcctgaggttctacatagatcttatagtacagaggctgatgtatggagtataggtgtaatagcatatattcttttatgtggtagtcggccattttgggctcggacagagtctggaatttttcgggcggtcttgaaagctgatcccagttttgatgaagcaccttggccttcgttatctgttgaagcgaaggactttgtcaaacgcttattaaataaggaccctcggaagcgaatgacagctgctcaagcattaagtcatccttggatgaggaattataatgatgtaaaagtgcctcttgatattttaatatttagactcatgaagatgtatatgcgatcgtcatcccttcgaaaggctgctttaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

124

Amino Acids

14.27

Weight (kDa)

10.0

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	141, 190
AluBI	AGCT	2 cut(s)	145, 247
AluI	AGCT	2 cut(s)	145, 247
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	2 cut(s)	43, 118
AoxI	GGCC	2 cut(s)	94, 172
ApeKI	GCWGC	2 cut(s)	247, 364
ApoI	RAATTY	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	225
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	225
AxyI	CCTNAGG	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	234, 351
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	248, 365
BlsI	GCNGC	2 cut(s)	249, 366
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	8, 227
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	169, 229, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	152
Bse21I	CCTNAGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	348
BseDI	CCNNGG	3 cut(s)	169, 229, 268
BseGI	GGATG	3 cut(s)	264, 278, 349
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	234, 351
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	2 cut(s)	96, 174
BsiEI	CGRYCG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	360
BsnI	GGCC	2 cut(s)	96, 174
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	25, 147, 343
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	96, 174
BspHI	TCATGA	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	8, 227
BspPI	GGATC	1 cut(s)	142
BspT104I	TTCGAA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	169, 229, 268
BssMI	GATC	3 cut(s)	25, 147, 343
BssT1I	CCWWGG	2 cut(s)	169, 268
BstBI	TTCGAA	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	11
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstF5I	GGATG	3 cut(s)	264, 278, 349
BstKTI	GATC	3 cut(s)	28, 150, 346
BstMBI	GATC	3 cut(s)	25, 147, 343
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	234, 351
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	96, 174
BtsCI	GGATG	3 cut(s)	264, 278, 349
CaiI	CAGNNNCTG	2 cut(s)	43, 118
CciI	TCATGA	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	8 cut(s)	7, 43, 96, 106, 145, 174, 247, 364
CviKI_1	RGCY	8 cut(s)	7, 43, 96, 106, 145, 174, 247, 364
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	27, 149, 345
DpnII	GATC	3 cut(s)	25, 147, 343
EaeI	YGGCCR	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	169, 268
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	11
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	169, 268
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	2 cut(s)	169, 268
FaeI	CATG	1 cut(s)	330
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 287, 319
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	2 cut(s)	248, 365
FokI	GGATG	3 cut(s)	251, 285, 336
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	248, 365
GluI	GCNGC	2 cut(s)	248, 365
HaeIII	GGCC	2 cut(s)	96, 174
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	2 cut(s)	115, 323
Hpy188I	TCNGA	2 cut(s)	110, 233
Hpy188III	TCNNGA	5 cut(s)	10, 119, 138, 304, 327
HpyAV	CCTTC	3 cut(s)	185, 189, 364
HpyCH4IV	ACGT	1 cut(s)	2
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	2
Hsp92II	CATG	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	25, 147, 343
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	23, 104, 165
Lsp1109I	GCAGC	2 cut(s)	234, 351
MaeII	ACGT	1 cut(s)	2
MalI	GATC	3 cut(s)	27, 149, 345
MboI	GATC	3 cut(s)	25, 147, 343
MboII	GAAGA	1 cut(s)	342
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	122, 279
MlyI	GAGTC	2 cut(s)	124, 317
MnlI	CCTC	5 cut(s)	6, 33, 239, 269, 311
MseI	TTAA	4 cut(s)	217, 259, 313, 370
MslI	CAYNNNNRTG	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	3 cut(s)	25, 147, 343
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	2 cut(s)	8, 227
NspV	TTCGAA	1 cut(s)	357
PagI	TCATGA	1 cut(s)	326
PflFI	GACNNNGTC	2 cut(s)	114, 202
PkrI	GCNGC	2 cut(s)	249, 366
Ple19I	CGATCG	1 cut(s)	346
PleI	GAGTC	2 cut(s)	123, 317
PpsI	GAGTC	2 cut(s)	123, 317
PpuMI	RGGWCCY	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	8, 227
PspPI	GGNCC	1 cut(s)	225
PspPPI	RGGWCCY	1 cut(s)	225
PstNI	CAGNNNCTG	2 cut(s)	43, 118
PsuI	RGATCY	1 cut(s)	25
PsyI	GACNNNGTC	2 cut(s)	114, 202
PvuI	CGATCG	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	4 cut(s)	217, 259, 313, 370
SatI	GCNGC	2 cut(s)	248, 365
Sau3AI	GATC	3 cut(s)	25, 147, 343
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	2 cut(s)	124, 317
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	5 cut(s)	17, 63, 147, 171, 249
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	122, 279
SsiI	CCGC	1 cut(s)	133
SspI	AATATT	1 cut(s)	317
StyI	CCWWGG	2 cut(s)	169, 268
TaqI	TCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	122, 279
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	4 cut(s)	217, 259, 313, 370
Tru9I	TTAA	4 cut(s)	217, 259, 313, 370
TseI	GCWGC	2 cut(s)	247, 364
TspDTI	ATGAA	2 cut(s)	176, 343
Tth111I	GACNNNGTC	2 cut(s)	114, 202
VpaK11BI	GGWCC	1 cut(s)	225
XagI	CCTNNNNNAGG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.