Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Forward (+)

39520105 .. 39522998

Gene Structure 2894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002771

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAACCTTGTTCCTCCATTGCCATGTTCATTGGCCAATTTATTTGTGAAGATTCATCATTTACCACTGCACTTTCCTTCACTTGCTGGAAGGGTCCTGATGAATTTAACAGATAGTTGTGGTGGTTACCATCAATTCCCTGAGGCCAAGTCTCTCTCAAGATTCATACGAATGCAGAAGGGTGGAAAATACTCAAAAGATGATGCAAAGACTGTTGCATTTTGTCATCTGCAGGGTGTGGTGCACCGTGATCTTAAGCCAGAGAACTTTTTGTATACTGCTAAGGATGAGAGTTCACCATTGAAAGGCATTGACTTTGGCCTATCAGATTTTGCCAAGCCAGATGAGAGGCTTAATGATATTGTCGGAAGTGCATACTACGTGGATCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTATGGAGTATAGGTGTAATAGCATATATTTTTTATTCTGGAATTTTTCGGGTGGTCTTGAAATCTGATCCCAGTTTTGATGAAGCACCTTGGCCTTTGTTATCTGTTGAAGCGAAGGACTTTGTCAGACGCTTATTAAATAAGGACCCTCGGAAGCGAATGACAGCTGCTCAAGCATTAAGTCATCCTTGGATGAGGAATTATAATGATGTTAAAGTGCCTCTTGATATTTTAATATTTAGACGCATGAAGATGTATATGCGATCGTCATCTCTTCGAAAGGCTGCTTTAAGGTTCATCCTAAGCCCCTCAATCGAAACGATCTTCAAAATCCATGGAATCTCTGAACTTCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

262

Amino Acids

29.81

Weight (kDa)

9.33

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 207	3.7e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	56 - 151	5.1e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	275
AclWI	GGATC	3 cut(s)	380, 393, 488
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	103, 468
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	304, 487, 536, 754
AluBI	AGCT	1 cut(s)	593
AluI	AGCT	1 cut(s)	593
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	3 cut(s)	380, 393, 488
AlwNI	CAGNNNCTG	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	4 cut(s)	33, 144, 319, 518
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	593, 710
ApoI	RAATTY	2 cut(s)	103, 468
AspS9I	GGNCC	2 cut(s)	94, 571
AsuHPI	GGTGA	1 cut(s)	288
AsuII	TTCGAA	1 cut(s)	703
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	94, 571
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	580, 697
BccI	CCATC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	784
BfmI	CTRYAG	1 cut(s)	230
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	1 cut(s)	404
BisI	GCNGC	2 cut(s)	594, 711
BlsI	GCNGC	2 cut(s)	595, 712
Bme18I	GGWCC	2 cut(s)	94, 571
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	94, 571
BmiI	GGNNCC	3 cut(s)	95, 387, 573
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	492
Bpu10I	CCTNAGC	2 cut(s)	282, 728
Bpu14I	TTCGAA	1 cut(s)	703
BpuEI	CTTGAG	2 cut(s)	142, 582
BsaAI	YACGTR	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	694
BsaJI	CCNNGG	5 cut(s)	390, 515, 575, 614, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	498
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	694
BseDI	CCNNGG	5 cut(s)	390, 515, 575, 614, 760
BseGI	GGATG	4 cut(s)	292, 610, 624, 723
BseJI	GATNNNNATC	1 cut(s)	694
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	498
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	580, 697
BsgI	GTGCAG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	692
BshFI	GGCC	4 cut(s)	35, 146, 321, 520
BsiEI	CGRYCG	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	4 cut(s)	35, 146, 321, 520
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	250, 385, 404, 493, 689, 747
Bsp19I	CCATGG	1 cut(s)	760
BspANI	GGCC	4 cut(s)	35, 146, 321, 520
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	95, 387, 573
BspMAI	CTGCAG	1 cut(s)	234
BspPI	GGATC	3 cut(s)	380, 393, 488
BspT104I	TTCGAA	1 cut(s)	703
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	5 cut(s)	390, 515, 575, 614, 760
BssMI	GATC	6 cut(s)	250, 385, 404, 493, 689, 747
BssNAI	GTATAC	1 cut(s)	276
BssT1I	CCWWGG	3 cut(s)	515, 614, 760
Bst1107I	GTATAC	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	214, 248
Bst6I	CTCTTC	1 cut(s)	705
BstAFI	CTTAAG	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	382
BstBI	TTCGAA	1 cut(s)	703
BstDEI	CTNAG	3 cut(s)	141, 282, 728
BstDSI	CCRYGG	1 cut(s)	760
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	4 cut(s)	292, 610, 624, 723
BstKTI	GATC	6 cut(s)	253, 388, 407, 496, 692, 750
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	6 cut(s)	250, 385, 404, 493, 689, 747
BstMCI	CGRYCG	1 cut(s)	692
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstPI	GGTNACC	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	580, 697
BstX2I	RGATCY	2 cut(s)	385, 404
BstYI	RGATCY	2 cut(s)	385, 404
BstZ17I	GTATAC	1 cut(s)	276
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	4 cut(s)	35, 146, 321, 520
BtgI	CCRYGG	1 cut(s)	760
BtsCI	GGATG	4 cut(s)	292, 610, 624, 723
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	65
CaiI	CAGNNNCTG	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	94, 571
CseI	GACGC	2 cut(s)	564, 678
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	3 cut(s)	24, 673, 761
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	141, 282, 728
DpnI	GATC	6 cut(s)	252, 387, 406, 495, 691, 749
DpnII	GATC	6 cut(s)	250, 385, 404, 493, 689, 747
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco130I	CCWWGG	3 cut(s)	515, 614, 760
Eco47I	GGWCC	2 cut(s)	94, 571
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	94, 571
EcoO65I	GGTNACC	1 cut(s)	125
EcoT14I	CCWWGG	3 cut(s)	515, 614, 760
ErhI	CCWWGG	3 cut(s)	515, 614, 760
FaeI	CATG	3 cut(s)	27, 676, 764
FalI	AAGNNNNNCTT	4 cut(s)	598, 630, 633, 665
FatI	CATG	3 cut(s)	23, 672, 760
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	594, 711
FokI	GGATG	4 cut(s)	299, 597, 631, 710
Fsp4HI	GCNGC	2 cut(s)	594, 711
FspBI	CTAG	1 cut(s)	784
GluI	GCNGC	2 cut(s)	594, 711
HaeIII	GGCC	4 cut(s)	35, 146, 321, 520
HgaI	GACGC	2 cut(s)	564, 678
Hin1II	CATG	3 cut(s)	27, 676, 764
HinfI	GANTC	3 cut(s)	52, 162, 765
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	3 cut(s)	244, 276, 296
Hpy188I	TCNGA	6 cut(s)	328, 368, 493, 554, 579, 772
Hpy188III	TCNNGA	6 cut(s)	97, 159, 389, 465, 484, 650
Hpy8I	GTNNAC	3 cut(s)	244, 276, 296
HpyAV	CCTTC	4 cut(s)	84, 87, 172, 535
HpyCH4III	ACNGT	2 cut(s)	214, 248
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	7 cut(s)	70, 175, 206, 218, 232, 244, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	3 cut(s)	141, 282, 728
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	27, 676, 764
Kzo9I	GATC	6 cut(s)	250, 385, 404, 493, 689, 747
LpnPI	CCDG	8 cut(s)	72, 110, 153, 218, 273, 354, 450, 511
Lsp1109I	GCAGC	2 cut(s)	580, 697
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	784
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	6 cut(s)	252, 387, 406, 495, 691, 749
MboI	GATC	6 cut(s)	250, 385, 404, 493, 689, 747
MboII	GAAGA	5 cut(s)	61, 688, 692, 742, 772
MflI	RGATCY	2 cut(s)	385, 404
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	5 cut(s)	37, 103, 134, 468, 625
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	9 cut(s)	24, 136, 342, 385, 412, 585, 615, 657, 745
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	8 cut(s)	107, 255, 354, 563, 605, 639, 659, 716
MslI	CAYNNNNRTG	3 cut(s)	22, 170, 677
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	593
MspCI	CTTAAG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	599
NcoI	CCATGG	1 cut(s)	760
NdeII	GATC	6 cut(s)	250, 385, 404, 493, 689, 747
NlaIII	CATG	3 cut(s)	27, 676, 764
NlaIV	GGNNCC	3 cut(s)	95, 387, 573
NspV	TTCGAA	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	52, 162, 765
PflFI	GACNNNGTC	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	595, 712
Ple19I	CGATCG	1 cut(s)	692
Ppu21I	YACGTR	1 cut(s)	382
PpuMI	RGGWCCY	2 cut(s)	94, 571
PsiI	TTATAA	1 cut(s)	630
Psp5II	RGGWCCY	2 cut(s)	94, 571
PspEI	GGTNACC	1 cut(s)	125
PspN4I	GGNNCC	3 cut(s)	95, 387, 573
PspPI	GGNCC	2 cut(s)	94, 571
PspPPI	RGGWCCY	2 cut(s)	94, 571
PstI	CTGCAG	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	385, 404
PsyI	GACNNNGTC	1 cut(s)	548
PvuI	CGATCG	1 cut(s)	692
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	3 cut(s)	22, 170, 677
SaqAI	TTAA	8 cut(s)	107, 255, 354, 563, 605, 639, 659, 716
SatI	GCNGC	2 cut(s)	594, 711
Sau3AI	GATC	6 cut(s)	250, 385, 404, 493, 689, 747
Sau96I	GGNCC	2 cut(s)	94, 571
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	9, 384, 396, 442, 517, 595, 722
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	703
SinI	GGWCC	2 cut(s)	94, 571
SmiMI	CAYNNNNRTG	3 cut(s)	22, 170, 677
SmlI	CTYRAG	3 cut(s)	157, 254, 597
SmoI	CTYRAG	3 cut(s)	157, 254, 597
Sse9I	AATT	5 cut(s)	37, 103, 134, 468, 625
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	1 cut(s)	784
StyI	CCWWGG	3 cut(s)	515, 614, 760
TaaI	ACNGT	2 cut(s)	214, 248
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	703, 741
TasI	AATT	5 cut(s)	37, 103, 134, 468, 625
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	3 cut(s)	52, 162, 765
Tru1I	TTAA	8 cut(s)	107, 255, 354, 563, 605, 639, 659, 716
Tru9I	TTAA	8 cut(s)	107, 255, 354, 563, 605, 639, 659, 716
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	2 cut(s)	593, 710
TspDTI	ATGAA	8 cut(s)	17, 18, 44, 116, 154, 522, 689, 712
TspRI	CASTG	1 cut(s)	72
Tth111I	GACNNNGTC	1 cut(s)	548
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	94, 571
XapI	RAATTY	2 cut(s)	103, 468
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.