Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

14507885 .. 14509116

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG091900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAAAATGCTACAGATGCAATGAAGGAGTCTTGCATTCCTGATCTTATTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTGTACATCAGCTTGAGGCACTTGATCGTTGGGAACAACATGCTCAATGTGCATATGAACTTTTCGAGAAGGATGGAAACAGGGCCATTGTCATCGAACAACTTGCTTCACCGTTTAGAGATAAAAGATATACAAGGCTCGGTAGACTGACGACTGTACTTTCTCCATATGTTATTCAGGAACTTGGGCTTGGTCCCTCCATTCCATTACATGTGGTTATCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCACGGTGTGTCCAGCCGGACGTTTGTGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

143

Amino Acids

16.29

Weight (kDa)

7.01

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	259
AdeI	CACNNNGTG	2 cut(s)	116, 403
AfaI	GTAC	2 cut(s)	120, 273
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	3 cut(s)	107, 127, 372
AluI	AGCT	3 cut(s)	107, 127, 372
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	104, 107
AspS9I	GGNCC	2 cut(s)	198, 308
AsuHPI	GGTGA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	94, 116
BccI	CCATC	2 cut(s)	182, 353
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	105, 108
BlsI	GCNGC	2 cut(s)	106, 109
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	198, 308
BmiI	GGNNCC	1 cut(s)	310
BmsI	GCATC	2 cut(s)	7, 62
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	94, 116
BsgI	GTGCAG	2 cut(s)	93, 123
BshFI	GGCC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	412
BslFI	GGGAC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	200
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	43, 139
BspANI	GGCC	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	2 cut(s)	43, 139
BssT1I	CCWWGG	1 cut(s)	376
Bst4CI	ACNGT	3 cut(s)	228, 271, 401
BstAUI	TGTACA	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	113, 368, 429
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	2 cut(s)	46, 142
BstMBI	GATC	2 cut(s)	43, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 164
BstNSI	RCATGY	2 cut(s)	158, 329
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	94, 116
BsuRI	GGCC	1 cut(s)	200
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	198, 308
Csp6I	GTAC	2 cut(s)	119, 272
CviAII	CATG	3 cut(s)	155, 326, 338
CviJI	RGCY	8 cut(s)	107, 127, 200, 253, 304, 372, 411, 428
CviKI_1	RGCY	8 cut(s)	107, 127, 200, 253, 304, 372, 411, 428
CviQI	GTAC	2 cut(s)	119, 272
DdeI	CTNAG	3 cut(s)	113, 368, 429
DpnI	GATC	2 cut(s)	45, 141
DpnII	GATC	2 cut(s)	43, 139
DraIII	CACNNNGTG	2 cut(s)	116, 403
Eco130I	CCWWGG	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	158, 329, 341
FaiI	YATR	8 cut(s)	156, 169, 171, 246, 283, 285, 327, 339
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	3 cut(s)	154, 325, 337
FauNDI	CATATG	2 cut(s)	169, 283
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	105, 108
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	105, 108
GluI	GCNGC	2 cut(s)	105, 108
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	412
Hin1II	CATG	3 cut(s)	158, 329, 341
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	119, 260
Hpy188III	TCNNGA	3 cut(s)	41, 181, 293
Hpy8I	GTNNAC	2 cut(s)	119, 260
HpyAV	CCTTC	3 cut(s)	19, 178, 418
HpyCH4III	ACNGT	3 cut(s)	228, 271, 401
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	8 cut(s)	20, 36, 53, 65, 104, 110, 167, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 164
HpyF3I	CTNAG	3 cut(s)	113, 368, 429
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	3 cut(s)	158, 329, 341
Kzo9I	GATC	2 cut(s)	43, 139
LpnPI	CCDG	6 cut(s)	54, 181, 278, 328, 421, 425
Lsp1109I	GCAGC	2 cut(s)	94, 116
LweI	GCATC	2 cut(s)	7, 62
MaeII	ACGT	1 cut(s)	416
MalI	GATC	2 cut(s)	45, 141
MboI	GATC	2 cut(s)	43, 139
MboII	GAAGA	1 cut(s)	90
MluCI	AATT	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	3 cut(s)	85, 124, 322
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	17, 164
NdeI	CATATG	2 cut(s)	169, 283
NdeII	GATC	2 cut(s)	43, 139
NlaIII	CATG	3 cut(s)	158, 329, 341
NlaIV	GGNNCC	1 cut(s)	310
NspI	RCATGY	2 cut(s)	158, 329
PciI	ACATGT	1 cut(s)	325
PctI	GAATGC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	106, 109
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PscI	ACATGT	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	2 cut(s)	198, 308
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	2 cut(s)	120, 273
RsaNI	GTAC	2 cut(s)	119, 272
RseI	CAYNNNNRTG	1 cut(s)	357
SatI	GCNGC	2 cut(s)	105, 108
Sau3AI	GATC	2 cut(s)	43, 139
Sau96I	GGNCC	2 cut(s)	198, 308
SchI	GAGTC	1 cut(s)	38
SetI	ASST	4 cut(s)	109, 129, 374, 419
SfaNI	GCATC	2 cut(s)	7, 62
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	3 cut(s)	228, 271, 401
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	2 cut(s)	180, 210
TasI	AATT	1 cut(s)	389
TatI	WGTACW	2 cut(s)	118, 271
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	2 cut(s)	104, 107
TspDTI	ATGAA	3 cut(s)	17, 38, 186
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	308
XceI	RCATGY	2 cut(s)	158, 329
XmiI	GTMKAC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.