Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

9917441 .. 9918802

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCCTAATGAAAAATGCTACAGACGCAATGAAGGAGTCTCGCATTCCTGATCTTATTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTGTACATCAGCTTGAGGCACTTGATCGTTGGGAACAACATGCTCGATGTGCATATGAACTTTTCGAGAAGGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGGCTTGGTCCCTCCATTCCATTACATGTGGTTCTCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCACGGTGTGTCCAGCCGGACGTTTGTGAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

123

Amino Acids

13.95

Weight (kDa)

6.04

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	216
AdeI	CACNNNGTG	2 cut(s)	125, 343
AfaI	GTAC	1 cut(s)	129
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	80, 221
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	3 cut(s)	116, 136, 312
AluI	AGCT	3 cut(s)	116, 136, 312
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	113, 116
AspS9I	GGNCC	2 cut(s)	4, 248
AvaII	GGWCC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	103, 125
BccI	CCATC	2 cut(s)	191, 293
BcoDI	GTCTC	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	4, 248
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	103, 125
BsgI	GTGCAG	2 cut(s)	102, 132
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	52, 148
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	52, 148
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	127
BstDEI	CTNAG	3 cut(s)	122, 308, 369
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	55, 151
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	52, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 173
BstNSI	RCATGY	2 cut(s)	167, 269
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	103, 125
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	4, 248
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	3 cut(s)	164, 266, 278
CviJI	RGCY	8 cut(s)	5, 116, 136, 209, 244, 312, 351, 367
CviKI_1	RGCY	8 cut(s)	5, 116, 136, 209, 244, 312, 351, 367
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	3 cut(s)	122, 308, 369
DpnI	GATC	2 cut(s)	54, 150
DpnII	GATC	2 cut(s)	52, 148
DraIII	CACNNNGTG	2 cut(s)	125, 343
Eco130I	CCWWGG	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	3 cut(s)	167, 269, 281
FaiI	YATR	5 cut(s)	165, 178, 180, 267, 279
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	3 cut(s)	163, 265, 277
FauNDI	CATATG	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	114, 117
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	114, 117
GluI	GCNGC	2 cut(s)	114, 117
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	352
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	167, 269, 281
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	50, 190
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	28, 187
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	6 cut(s)	62, 74, 113, 119, 176, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 173
HpyF3I	CTNAG	3 cut(s)	122, 308, 369
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	167, 269, 281
Kzo9I	GATC	2 cut(s)	52, 148
LpnPI	CCDG	5 cut(s)	63, 190, 268, 361, 365
Lsp1109I	GCAGC	2 cut(s)	103, 125
LweI	GCATC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	356
MalI	GATC	2 cut(s)	54, 150
MboI	GATC	2 cut(s)	52, 148
MboII	GAAGA	2 cut(s)	99, 233
MluCI	AATT	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	3 cut(s)	94, 133, 262
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	352
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	26, 173
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	2 cut(s)	52, 148
NlaIII	CATG	3 cut(s)	167, 269, 281
NlaIV	GGNNCC	1 cut(s)	250
NspI	RCATGY	2 cut(s)	167, 269
PciI	ACATGT	1 cut(s)	265
PctI	GAATGC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	115, 118
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PscI	ACATGT	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	4, 248
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	2 cut(s)	114, 117
Sau3AI	GATC	2 cut(s)	52, 148
Sau96I	GGNCC	2 cut(s)	4, 248
SchI	GAGTC	1 cut(s)	47
SetI	ASST	4 cut(s)	118, 138, 314, 359
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	169, 189
TasI	AATT	1 cut(s)	329
TatI	WGTACW	1 cut(s)	127
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	113, 116
TspDTI	ATGAA	3 cut(s)	26, 47, 195
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	248
XceI	RCATGY	2 cut(s)	167, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.