Rh6BG092300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003975
Physical Location & Seq
Reverse (-)
14564780 .. 14567898
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG092300.1

Sequence Viewer

Length: 924 bp
ATGTGTCAGGCACTGTCTAAGACATTGACTGTGGAAGAACTCTTTTATCTGAAAGAGCAGTTTGCACTATTAGTACCGAATAAGAATGGCACTATCACGCTTGACAATATTAGAATGGCCCTAATGAAAAATGCTACTGACACAATGAAGGAGTCTCGCATTCCTGATCTTATTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTCACTGTAGCCTGTTAATCGTGATTGGCAAAACAATCAGAAGTGCACCATTGTCTCAAAAGAAAATTGAACTTGGGCTTGGTCCCTCCATTCCATTACACGTGGTTATCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCACGATAGAGGGGCTCCTGTAATTACTTCAATTGAAGTTAGGCCACTTCCCCAAGGAGCTTACACAAGTGGCATGGAAGATTTCCCACATTATTCACTGAGGAAAAGTTATCGAATAGATTGTGGCTACACAAATGGATCCTTGAGGTATCCGTTGGATCCATATGATCGTACATGGGATGCTCATCAAAGCTTTGCACCATTTCATGTGTCAACTGGTTTGAAGACTCAACTTATTACCTACAATTTTTTGGGATTAAAGGAGAATCTCCCAGCTGATATCCTTCAAACCGCAAGAGTTTTGGCACAGAGGGATGTCTTGACATGTAACTTATATCTCGACACCTTGGCAGATTACTACATTGTCCTCTCCTTTGCTGGGATTCTACCTCTGTTTCCTTCATTCGACATTTTGCTTAATGGTGATGTTGCACAATCAAATTATACAGTAAGAAGCTCAGAAGTTAGTGCACTATACTTCACGCAAAGAGGAATAAATGAGAAAGTAGTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

307

Amino Acids

34.57

Weight (kDa)

7.08

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 138 - 297 3.3e-18 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 699
AclWI GGATC 4 cut(s) 540, 553, 560, 573
AcvI CACGTG 1 cut(s) 340
AfaI GTAC 2 cut(s) 75, 580
AfiI CCNNNNNNNGG 1 cut(s) 786
AflIII ACRYGT 2 cut(s) 337, 731
AgsI TTSAA 6 cut(s) 194, 308, 438, 443, 631, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 6 cut(s) 230, 384, 467, 600, 683, 864
AluI AGCT 6 cut(s) 230, 384, 467, 600, 683, 864
Alw21I GWGCWC 2 cut(s) 286, 880
Alw26I GTCTC 2 cut(s) 159, 297
Alw44I GTGCAC 2 cut(s) 282, 876
AlwI GGATC 4 cut(s) 540, 553, 560, 573
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 2 cut(s) 117, 449
ApaLI GTGCAC 2 cut(s) 282, 876
ApeKI GCWGC 2 cut(s) 227, 230
AspS9I GGNCC 2 cut(s) 118, 320
AsuHPI GGTGA 1 cut(s) 842
AvaII GGWCC 1 cut(s) 320
BaeGI GKGCMC 2 cut(s) 286, 880
BamHI GGATCC 2 cut(s) 545, 565
BanII GRGCYC 1 cut(s) 424
BbrPI CACGTG 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 638
Bbv12I GWGCWC 2 cut(s) 286, 880
BbvI GCAGC 2 cut(s) 217, 239
BccI CCATC 1 cut(s) 365
BciVI GTATCC 1 cut(s) 567
BcoDI GTCTC 2 cut(s) 159, 297
BfmI CTRYAG 1 cut(s) 244
BfuI GTATCC 1 cut(s) 567
BisI GCNGC 2 cut(s) 228, 231
BlsI GCNGC 2 cut(s) 229, 232
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 118, 320
BmiI GGNNCC 4 cut(s) 322, 423, 547, 567
BmsI GCATC 2 cut(s) 185, 577
BpiI GAAGAC 1 cut(s) 638
BpuEI CTTGAG 1 cut(s) 571
BsaAI YACGTR 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 3 cut(s) 388, 460, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 786
Bse1I ACTGG 2 cut(s) 359, 628
Bse8I GATNNNNATC 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 388, 460, 753
BseGI GGATG 2 cut(s) 592, 727
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 1 cut(s) 786
BseMII CTCAG 2 cut(s) 497, 879
BseNI ACTGG 2 cut(s) 359, 628
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 2 cut(s) 286, 880
BseXI GCAGC 2 cut(s) 217, 239
BseYI CCCAGC 2 cut(s) 679, 785
BsgI GTGCAG 2 cut(s) 216, 246
BshFI GGCC 2 cut(s) 119, 451
BsiHKAI GWGCWC 2 cut(s) 286, 880
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 786
BsmAI GTCTC 2 cut(s) 159, 297
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 2 cut(s) 119, 451
Bsp1286I GDGCHC 3 cut(s) 286, 424, 880
Bsp143I GATC 4 cut(s) 166, 545, 565, 574
BspACI CCGC 1 cut(s) 699
BspANI GGCC 2 cut(s) 119, 451
BspCNI CTCAG 2 cut(s) 498, 878
BspLI GGNNCC 4 cut(s) 322, 423, 547, 567
BspPI GGATC 4 cut(s) 540, 553, 560, 573
BsrI ACTGG 2 cut(s) 359, 628
BssECI CCNNGG 3 cut(s) 388, 460, 753
BssMI GATC 4 cut(s) 166, 545, 565, 574
BssT1I CCWWGG 3 cut(s) 388, 460, 753
Bst4CI ACNGT 4 cut(s) 15, 31, 245, 856
BstBAI YACGTR 1 cut(s) 340
BstDEI CTNAG 5 cut(s) 18, 236, 380, 506, 865
BstF5I GGATG 2 cut(s) 592, 727
BstKTI GATC 4 cut(s) 169, 548, 568, 577
BstMAI GTCTC 2 cut(s) 159, 297
BstMBI GATC 4 cut(s) 166, 545, 565, 574
BstNSI RCATGY 1 cut(s) 735
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 2 cut(s) 286, 880
BstV1I GCAGC 2 cut(s) 217, 239
BstV2I GAAGAC 1 cut(s) 638
BstX2I RGATCY 2 cut(s) 545, 565
BstYI RGATCY 2 cut(s) 545, 565
BsuI GTATCC 1 cut(s) 567
BsuRI GGCC 2 cut(s) 119, 451
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 592, 727
BtsIMutI CAGTG 4 cut(s) 11, 241, 366, 503
CaiI CAGNNNCTG 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 118, 320
Csp6I GTAC 2 cut(s) 74, 579
CviAII CATG 5 cut(s) 350, 481, 582, 614, 732
CviQI GTAC 2 cut(s) 74, 579
DdeI CTNAG 5 cut(s) 18, 236, 380, 506, 865
DpnI GATC 4 cut(s) 168, 547, 567, 576
DpnII GATC 4 cut(s) 166, 545, 565, 574
Eco130I CCWWGG 3 cut(s) 388, 460, 753
Eco24I GRGCYC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 320
Eco72I CACGTG 1 cut(s) 340
EcoRV GATATC 1 cut(s) 688
EcoT14I CCWWGG 3 cut(s) 388, 460, 753
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 3 cut(s) 388, 460, 753
FaeI CATG 5 cut(s) 353, 484, 585, 617, 735
FaqI GGGAC 1 cut(s) 306
FatI CATG 5 cut(s) 349, 480, 581, 613, 731
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 2 cut(s) 228, 231
FokI GGATG 2 cut(s) 599, 734
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 2 cut(s) 228, 231
GluI GCNGC 2 cut(s) 228, 231
GsaI CCCAGC 2 cut(s) 683, 789
HaeIII GGCC 2 cut(s) 119, 451
Hin1II CATG 5 cut(s) 353, 484, 585, 617, 735
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HindIII AAGCTT 2 cut(s) 382, 598
HinfI GANTC 4 cut(s) 152, 634, 673, 790
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 3 cut(s) 284, 621, 878
Hpy188I TCNGA 3 cut(s) 51, 278, 868
Hpy188III TCNNGA 4 cut(s) 164, 259, 727, 746
Hpy8I GTNNAC 3 cut(s) 284, 621, 878
HpyAV CCTTC 3 cut(s) 142, 701, 816
HpyCH4III ACNGT 4 cut(s) 15, 31, 245, 856
HpyCH4IV ACGT 1 cut(s) 339
HpyF3I CTNAG 5 cut(s) 18, 236, 380, 506, 865
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 5 cut(s) 353, 484, 585, 617, 735
Kzo9I GATC 4 cut(s) 166, 545, 565, 574
LmnI GCTCC 2 cut(s) 427, 464
LpnPI CCDG 7 cut(s) 177, 263, 340, 438, 609, 693, 771
Lsp1109I GCAGC 2 cut(s) 217, 239
LweI GCATC 2 cut(s) 185, 577
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 239, 734
MalI GATC 4 cut(s) 168, 547, 567, 576
MboI GATC 4 cut(s) 166, 545, 565, 574
MboII GAAGA 4 cut(s) 47, 213, 497, 643
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 2 cut(s) 545, 565
MhlI GDGCHC 3 cut(s) 286, 424, 880
MluCI AATT 6 cut(s) 303, 401, 429, 438, 652, 847
MlyI GAGTC 2 cut(s) 161, 628
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 9 cut(s) 208, 334, 410, 501, 546, 711, 785, 807, 890
MseI TTAA 3 cut(s) 254, 665, 825
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 2 cut(s) 230, 683
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 159
NdeI CATATG 1 cut(s) 571
NdeII GATC 4 cut(s) 166, 545, 565, 574
NlaIII CATG 5 cut(s) 353, 484, 585, 617, 735
NlaIV GGNNCC 4 cut(s) 322, 423, 547, 567
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 735
PciI ACATGT 1 cut(s) 731
PctI GAATGC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 673, 790
PkrI GCNGC 2 cut(s) 229, 232
PleI GAGTC 2 cut(s) 160, 628
PmaCI CACGTG 1 cut(s) 340
PmlI CACGTG 1 cut(s) 340
PpsI GAGTC 2 cut(s) 160, 628
Ppu21I YACGTR 1 cut(s) 340
PscI ACATGT 1 cut(s) 731
PspCI CACGTG 1 cut(s) 340
PspFI CCCAGC 2 cut(s) 679, 785
PspN4I GGNNCC 4 cut(s) 322, 423, 547, 567
PspPI GGNCC 2 cut(s) 118, 320
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 2 cut(s) 545, 565
PvuII CAGCTG 2 cut(s) 230, 683
RsaI GTAC 2 cut(s) 75, 580
RsaNI GTAC 2 cut(s) 74, 579
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 3 cut(s) 254, 665, 825
SatI GCNGC 2 cut(s) 228, 231
Sau3AI GATC 4 cut(s) 166, 545, 565, 574
Sau96I GGNCC 2 cut(s) 118, 320
SchI GAGTC 2 cut(s) 161, 628
SduI GDGCHC 3 cut(s) 286, 424, 880
SfaNI GCATC 2 cut(s) 185, 577
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 6 cut(s) 303, 401, 429, 438, 652, 847
SsiI CCGC 1 cut(s) 699
SspI AATATT 1 cut(s) 109
StyI CCWWGG 3 cut(s) 388, 460, 753
TaaI ACNGT 4 cut(s) 15, 31, 245, 856
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 520, 747, 813
TasI AATT 6 cut(s) 303, 401, 429, 438, 652, 847
TfiI GAWTC 2 cut(s) 673, 790
Tru1I TTAA 3 cut(s) 254, 665, 825
Tru9I TTAA 3 cut(s) 254, 665, 825
TscAI CASTG 4 cut(s) 18, 248, 373, 510
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 227, 230
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 4 cut(s) 140, 161, 602, 798
TspGWI ACGGA 1 cut(s) 549
TspRI CASTG 4 cut(s) 18, 248, 373, 510
VneI GTGCAC 2 cut(s) 282, 876
VpaK11BI GGWCC 1 cut(s) 320
XceI RCATGY 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.