Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

56068324 .. 56075164

Gene Structure 6841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGGGAACCTGCACCTCAAAACCACCAAAGCCAAACCCCTACGCCTCCAGAGACCCAAATGACCCATCTGACCCTTCCCAGACCCCCAAATCCCTAACCCCCCACCACAATTCCAAAGACGACGCCGTTTCCGGCGCCAGGCAGTCACAGTCCCAGTCGCCGTTCTTCCCCTTCTACAGCCCCAGCCCGGCCCATTACCTCAAGAAGTCTCCGGCGACGACCCGGAGCAAGAGCGCTGCCTCCACGCCCAGCCGGTTTTTCCGGCGACCCTTCCCGCCGCCGTCGCCGGCGAAGCACATTAAGGCCGTGCTGGCGCGGCGGCTGGGGAAGAAGGCGACGGCGTCGGTGGCGATACCGGAGGACGGTGAAGATGAGGATGGGGTTGATCTGGACAAGAGGTTTGGGTTCTCCAAGGAGTTAACTAGTAGATTGGAGGTTGGGGATGAAGTGGGCCGAGGGCATTTTGGGTATACTTGCTCTGCTGTGTTCAAAAAGGGTGAGTTTAAGGGCCAGCAGGTAGCTGTTAAAGTCATCCCTAAAGCAAAGATGACAACTGCTATTGCAATTGAGGATGTGAGAAGGGAGGTCAAAATATTGCGTGCCTTGACCGGACATACAAACCTAGTTCAGTTCTATGATGCATTTGAAGACAGTGATAATGTCTACATAGTAATGGAGTTGTGTGAAGGTGGGGAGCTTTTGGATAGAATACTTTCAAGGGGTGGAAAATACTCAGAGGATGATGCAAAGACTGTCATGGTTCAAATACTGAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGTGATCTTAAGCCAGAGAACTTTTTGTATACTGCTAAGGATGAGAGTTCGCCATTGAAAGCCATTGACTTTGGCCTATCAGATTTTGCCAAACCAGATGAGAGGCTTAATGATATTGTCGGAAGTGCATACTATGTGGCTCCTGAGGTTCTACATAGATCTTATAGTACGGAGGCTGATGTATGGAGTATAGGTGTAATAGCATATATTCTTTTATGTGGTAGTCGGCCATTTTGGGCTCGGACAGAGTCTGGAATTTTTCGGGCGGTCTTGAAAGCTGATCCCAGTTTTGATGAAGCACCTTGGCCTTCGTTATCTGTTGAAGCGAAGGACTTTGTCAAACGCTTATTAAATAAGGACCCTCGGAAGCGAATGACAGCTGCTCAAGCATTAAGTCATCCTTGGATGAGGAATTATAATGATGTAAAAGTGCCTCTTGATATTTTAATATTTAGACTCATGAAGATGTATATGCGATCGTCATCCCTTCGAAAGGCTGCTTTAAGGGCACTGTCTAAGACATTGACTGTGGAAGAACTCTTTTATCTGAAGGAGCAGTTTGCACTATTAGTACCAAACAAGAATGGCACTATCACTCTTGACAATATTAGAATGGCCCTAATGAAAAATGCTACAGACGCAATGAAGGAGTCTCGCATTCCTGATCTTATTGCATCGCTAAATGCACTTCAGTACAGAAGAATGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTGTGCATCAGCTTGAGGCACTTGATCGTTGGGAACAACATGCTCGATGTGCATATGAACTTTTCGAGAAGGATGGAAACAGGGCGATTGTCATTGAAGAACTTGCTTCAGAACTTGGGCTTGGTCCCTCCATTCCATTACATGTGGTTCTCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCACGGTGTGTCCAGCCGGACGTTTGTGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

597

Amino Acids

66.84

Weight (kDa)

8.86

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	145 - 406	2e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	145 - 399	5.1e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1227
Acc36I	ACCTGC	2 cut(s)	17, 505
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	3 cut(s)	470, 663, 839
AccII	CGCG	1 cut(s)	316
AciI	CCGC	5 cut(s)	275, 278, 316, 319, 1076
AclWI	GGATC	1 cut(s)	1085
AcoI	YGGCCR	1 cut(s)	1037
AcsI	RAATTY	1 cut(s)	1065
AcuI	CTGAAG	4 cut(s)	779, 1379, 1484, 1638
AcyI	GRCGYC	3 cut(s)	123, 135, 341
AdeI	CACNNNGTG	2 cut(s)	1547, 1765
AfaI	GTAC	3 cut(s)	979, 1383, 1505
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	4 cut(s)	138, 187, 362, 1303
AflII	CTTAAG	1 cut(s)	818
AflIII	ACRYGT	1 cut(s)	1687
AgsI	TTSAA	8 cut(s)	490, 647, 717, 764, 868, 1084, 1133, 1643
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	1650, 1682
AluBI	AGCT	7 cut(s)	521, 697, 1088, 1190, 1538, 1558, 1734
AluI	AGCT	7 cut(s)	521, 697, 1088, 1190, 1538, 1558, 1734
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	3 cut(s)	45, 213, 1467
Alw44I	GTGCAC	1 cut(s)	806
AlwI	GGATC	1 cut(s)	1085
AlwNI	CAGNNNCTG	1 cut(s)	1061
Aor51HI	AGCGCT	1 cut(s)	235
AoxI	GGCC	8 cut(s)	189, 303, 451, 508, 883, 1037, 1115, 1425
ApaLI	GTGCAC	1 cut(s)	806
ApeKI	GCWGC	5 cut(s)	236, 1190, 1307, 1535, 1538
ApoI	RAATTY	1 cut(s)	1065
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
Asp700I	GAANNNNTTC	1 cut(s)	712
AspLEI	GCGC	3 cut(s)	137, 236, 316
AspS9I	GGNCC	6 cut(s)	190, 451, 508, 1168, 1426, 1670
AsuC2I	CCSGG	2 cut(s)	188, 223
AsuHPI	GGTGA	2 cut(s)	377, 509
AsuII	TTCGAA	1 cut(s)	1300
AvaII	GGWCC	2 cut(s)	1168, 1670
AxyI	CCTNAGG	1 cut(s)	954
BaeGI	GKGCMC	2 cut(s)	810, 1321
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	1051
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	810
BbvI	GCAGC	5 cut(s)	223, 1177, 1294, 1525, 1547
BccI	CCATC	4 cut(s)	73, 371, 1613, 1715
BceAI	ACGGC	5 cut(s)	110, 145, 265, 290, 354
BciT130I	CCWGG	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	188, 223
BcoDI	GTCTC	3 cut(s)	45, 213, 1467
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	2 cut(s)	423, 623
BfmI	CTRYAG	2 cut(s)	175, 1443
BfoI	RGCGCY	2 cut(s)	138, 237
BfrI	CTTAAG	1 cut(s)	818
BfuAI	ACCTGC	2 cut(s)	17, 505
BglI	GCCNNNNNGGC	1 cut(s)	311
BglII	AGATCT	1 cut(s)	968
BisI	GCNGC	8 cut(s)	237, 278, 317, 320, 1191, 1308, 1536, 1539
BlsI	GCNGC	8 cut(s)	238, 279, 318, 321, 1192, 1309, 1537, 1540
Bme1390I	CCNGG	3 cut(s)	139, 188, 223
Bme18I	GGWCC	2 cut(s)	1168, 1670
BmgT120I	GGNCC	6 cut(s)	190, 451, 508, 1168, 1426, 1670
BmiI	GGNNCC	5 cut(s)	7, 136, 951, 1170, 1672
BmrFI	CCNGG	3 cut(s)	139, 188, 223
BmrI	ACTGGG	2 cut(s)	148, 1089
BmsI	GCATC	4 cut(s)	628, 733, 1493, 1561
BmuI	ACTGGG	2 cut(s)	148, 1089
BpiI	GAAGAC	1 cut(s)	654
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	846
Bpu14I	TTCGAA	1 cut(s)	1300
BpuEI	CTTGAG	3 cut(s)	185, 1179, 1580
BpuMI	CCSGG	2 cut(s)	188, 223
BsaBI	GATNNNNATC	1 cut(s)	1291
BsaHI	GRCGYC	3 cut(s)	123, 135, 341
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	6 cut(s)	411, 454, 1112, 1172, 1211, 1738
BsaWI	WCCGGW	2 cut(s)	355, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 187, 362, 1303
Bse118I	RCCGGY	2 cut(s)	252, 286
Bse1I	ACTGG	3 cut(s)	154, 1095, 1709
Bse21I	CCTNAGG	1 cut(s)	954
Bse3DI	GCAATG	1 cut(s)	1458
Bse8I	GATNNNNATC	1 cut(s)	1291
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	6 cut(s)	411, 454, 1112, 1172, 1211, 1738
BseJI	GATNNNNATC	1 cut(s)	1291
BseLI	CCNNNNNNNGG	4 cut(s)	138, 187, 362, 1303
BseMI	GCAATG	1 cut(s)	1458
BseMII	CTCAG	2 cut(s)	747, 945
BseNI	ACTGG	3 cut(s)	154, 1095, 1709
BseRI	GAGGAG	1 cut(s)	1538
BseSI	GKGCMC	2 cut(s)	810, 1321
BseXI	GCAGC	5 cut(s)	223, 1177, 1294, 1525, 1547
BseYI	CCCAGC	3 cut(s)	182, 248, 322
BsgI	GTGCAG	2 cut(s)	1524, 1554
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	1289
BshFI	GGCC	8 cut(s)	191, 305, 453, 510, 885, 1039, 1117, 1427
BshNI	GGYRCC	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	1289
BsiHKAI	GWGCWC	1 cut(s)	810
BslFI	GGGAC	2 cut(s)	136, 1656
BslI	CCNNNNNNNGG	4 cut(s)	138, 187, 362, 1303
BsmAI	GTCTC	3 cut(s)	45, 213, 1467
BsmFI	GGGAC	2 cut(s)	136, 1656
BsmI	GAATGC	1 cut(s)	1467
BsnI	GGCC	8 cut(s)	191, 305, 453, 510, 885, 1039, 1117, 1427
Bso31I	GGTCTC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	1300
Bsp1286I	GDGCHC	3 cut(s)	810, 1051, 1321
Bsp143I	GATC	7 cut(s)	385, 814, 968, 1090, 1286, 1474, 1570
BspACI	CCGC	5 cut(s)	275, 278, 316, 319, 1076
BspANI	GGCC	8 cut(s)	191, 305, 453, 510, 885, 1039, 1117, 1427
BspCNI	CTCAG	2 cut(s)	746, 946
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	1269
BspLI	GGNNCC	5 cut(s)	7, 136, 951, 1170, 1672
BspMI	ACCTGC	2 cut(s)	17, 505
BspPI	GGATC	1 cut(s)	1085
BspT104I	TTCGAA	1 cut(s)	1300
BspT107I	GGYRCC	1 cut(s)	134
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	1458
BsrFI	RCCGGY	2 cut(s)	252, 286
BsrI	ACTGG	3 cut(s)	154, 1095, 1709
BssAI	RCCGGY	2 cut(s)	252, 286
BssECI	CCNNGG	6 cut(s)	411, 454, 1112, 1172, 1211, 1738
BssMI	GATC	7 cut(s)	385, 814, 968, 1090, 1286, 1474, 1570
BssNAI	GTATAC	2 cut(s)	471, 840
BssNI	GRCGYC	3 cut(s)	123, 135, 341
BssT1I	CCWWGG	4 cut(s)	411, 1112, 1211, 1738
Bst1107I	GTATAC	2 cut(s)	471, 840
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	8 cut(s)	150, 365, 653, 754, 812, 1323, 1339, 1763
BstACI	GRCGYC	3 cut(s)	123, 135, 341
BstAFI	CTTAAG	1 cut(s)	818
BstBI	TTCGAA	1 cut(s)	1300
BstC8I	GCNNGC	4 cut(s)	288, 312, 512, 600
BstDEI	CTNAG	7 cut(s)	733, 846, 954, 1326, 1544, 1730, 1791
BstENI	CCTNNNNNAGG	1 cut(s)	1301
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	2 cut(s)	138, 237
BstHHI	GCGC	3 cut(s)	137, 236, 316
BstKTI	GATC	7 cut(s)	388, 817, 971, 1093, 1289, 1477, 1573
BstMAI	GTCTC	3 cut(s)	45, 213, 1467
BstMBI	GATC	7 cut(s)	385, 814, 968, 1090, 1286, 1474, 1570
BstMCI	CGRYCG	1 cut(s)	1289
BstMWI	GCNNNNNNNGC	9 cut(s)	283, 292, 311, 316, 347, 1196, 1316, 1448, 1595
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	2 cut(s)	1589, 1691
BstSCI	CCNGG	3 cut(s)	137, 186, 221
BstSFI	CTRYAG	2 cut(s)	175, 1443
BstSLI	GKGCMC	2 cut(s)	810, 1321
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	5 cut(s)	223, 1177, 1294, 1525, 1547
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	1 cut(s)	968
BstYI	RGATCY	1 cut(s)	968
BstZ17I	GTATAC	2 cut(s)	471, 840
Bsu36I	CCTNAGG	1 cut(s)	954
BsuRI	GGCC	8 cut(s)	191, 305, 453, 510, 885, 1039, 1117, 1427
BtgZI	GCGATG	1 cut(s)	1470
BtsIMutI	CAGTG	3 cut(s)	658, 1319, 1716
BveI	ACCTGC	2 cut(s)	17, 505
Cac8I	GCNNGC	4 cut(s)	288, 312, 512, 600
CaiI	CAGNNNCTG	1 cut(s)	1061
CciI	TCATGA	1 cut(s)	1269
CfoI	GCGC	3 cut(s)	137, 236, 316
Cfr10I	RCCGGY	2 cut(s)	252, 286
Cfr13I	GGNCC	6 cut(s)	190, 451, 508, 1168, 1426, 1670
CseI	GACGC	3 cut(s)	131, 330, 1457
Csp6I	GTAC	3 cut(s)	978, 1382, 1504
CviAII	CATG	5 cut(s)	757, 1270, 1586, 1688, 1700
CviQI	GTAC	3 cut(s)	978, 1382, 1504
DdeI	CTNAG	7 cut(s)	733, 846, 954, 1326, 1544, 1730, 1791
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	7 cut(s)	387, 816, 970, 1092, 1288, 1476, 1572
DpnII	GATC	7 cut(s)	385, 814, 968, 1090, 1286, 1474, 1570
DraIII	CACNNNGTG	2 cut(s)	1547, 1765
EaeI	YGGCCR	1 cut(s)	1037
Eco130I	CCWWGG	4 cut(s)	411, 1112, 1211, 1738
Eco24I	GRGCYC	1 cut(s)	1051
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	1168, 1670
Eco47III	AGCGCT	1 cut(s)	235
Eco57I	CTGAAG	4 cut(s)	779, 1379, 1484, 1638
Eco81I	CCTNAGG	1 cut(s)	954
EcoNI	CCTNNNNNAGG	1 cut(s)	1301
EcoO109I	RGGNCCY	1 cut(s)	1168
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	4 cut(s)	411, 1112, 1211, 1738
EcoT22I	ATGCAT	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	1051
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	4 cut(s)	411, 1112, 1211, 1738
FaeI	CATG	5 cut(s)	760, 1273, 1589, 1691, 1703
FalI	AAGNNNNNCTT	4 cut(s)	1195, 1227, 1230, 1262
FaqI	GGGAC	2 cut(s)	136, 1656
FatI	CATG	5 cut(s)	756, 1269, 1585, 1687, 1699
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	1600
FblI	GTMKAC	3 cut(s)	470, 663, 839
Fnu4HI	GCNGC	8 cut(s)	237, 278, 317, 320, 1191, 1308, 1536, 1539
FriOI	GRGCYC	1 cut(s)	1051
Fsp4HI	GCNGC	8 cut(s)	237, 278, 317, 320, 1191, 1308, 1536, 1539
FspBI	CTAG	2 cut(s)	423, 623
GlaI	GCGC	3 cut(s)	136, 235, 315
GluI	GCNGC	8 cut(s)	237, 278, 317, 320, 1191, 1308, 1536, 1539
GsaI	CCCAGC	3 cut(s)	186, 252, 326
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	2 cut(s)	138, 237
HaeIII	GGCC	8 cut(s)	191, 305, 453, 510, 885, 1039, 1117, 1427
HgaI	GACGC	3 cut(s)	131, 330, 1457
HhaI	GCGC	3 cut(s)	137, 236, 316
Hin1I	GRCGYC	3 cut(s)	123, 135, 341
Hin1II	CATG	5 cut(s)	760, 1273, 1589, 1691, 1703
Hin6I	GCGC	3 cut(s)	135, 234, 314
HinP1I	GCGC	3 cut(s)	135, 234, 314
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	1732
HinfI	GANTC	3 cut(s)	1058, 1266, 1460
HpaI	GTTAAC	1 cut(s)	420
HphI	GGTGA	2 cut(s)	377, 509
Hpy166II	GTNNAC	5 cut(s)	420, 471, 664, 808, 840
Hpy188I	TCNGA	8 cut(s)	70, 736, 892, 932, 1053, 1176, 1359, 1657
Hpy8I	GTNNAC	5 cut(s)	420, 471, 664, 808, 840
Hpy99I	CGWCG	5 cut(s)	125, 220, 286, 340, 346
HpyCH4III	ACNGT	8 cut(s)	150, 365, 653, 754, 812, 1323, 1339, 1763
HpyCH4IV	ACGT	1 cut(s)	1778
HpyF10VI	GCNNNNNNNGC	9 cut(s)	283, 292, 311, 316, 347, 1196, 1316, 1448, 1595
HpyF3I	CTNAG	7 cut(s)	733, 846, 954, 1326, 1544, 1730, 1791
HpySE526I	ACGT	1 cut(s)	1778
Hsp92I	GRCGYC	3 cut(s)	123, 135, 341
Hsp92II	CATG	5 cut(s)	760, 1273, 1589, 1691, 1703
HspAI	GCGC	3 cut(s)	135, 234, 314
KasI	GGCGCC	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
KspAI	GTTAAC	1 cut(s)	420
Kzo9I	GATC	7 cut(s)	385, 814, 968, 1090, 1286, 1474, 1570
LmnI	GCTCC	4 cut(s)	225, 694, 955, 1363
Lsp1109I	GCAGC	5 cut(s)	223, 1177, 1294, 1525, 1547
LweI	GCATC	4 cut(s)	628, 733, 1493, 1561
MaeI	CTAG	2 cut(s)	423, 623
MaeII	ACGT	1 cut(s)	1778
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	7 cut(s)	387, 816, 970, 1092, 1288, 1476, 1572
MboI	GATC	7 cut(s)	385, 814, 968, 1090, 1286, 1474, 1570
MboII	GAAGA	9 cut(s)	157, 340, 380, 659, 785, 1285, 1355, 1521, 1655
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	968
MhlI	GDGCHC	3 cut(s)	810, 1051, 1321
MluCI	AATT	5 cut(s)	109, 564, 1065, 1222, 1751
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	3 cut(s)	1067, 1260, 1469
MmeI	TCCRAC	1 cut(s)	910
Mph1103I	ATGCAT	1 cut(s)	643
MreI	CGCCGGCG	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	712
MslI	CAYNNNNRTG	3 cut(s)	671, 1274, 1719
MspA1I	CMGCKG	2 cut(s)	1190, 1538
MspCI	CTTAAG	1 cut(s)	818
MspR9I	CCNGG	3 cut(s)	139, 188, 223
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	1467
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	9 cut(s)	283, 292, 311, 316, 347, 1196, 1316, 1448, 1595
NaeI	GCCGGC	1 cut(s)	288
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	2 cut(s)	188, 223
NdeI	CATATG	1 cut(s)	1600
NdeII	GATC	7 cut(s)	385, 814, 968, 1090, 1286, 1474, 1570
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	5 cut(s)	760, 1273, 1589, 1691, 1703
NlaIV	GGNNCC	5 cut(s)	7, 136, 951, 1170, 1672
NmeAIII	GCCGAG	1 cut(s)	479
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	2 cut(s)	1589, 1691
NspV	TTCGAA	1 cut(s)	1300
PagI	TCATGA	1 cut(s)	1269
PciI	ACATGT	1 cut(s)	1687
PctI	GAATGC	1 cut(s)	1467
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	712
PflFI	GACNNNGTC	3 cut(s)	340, 1057, 1145
PkrI	GCNGC	8 cut(s)	238, 279, 318, 321, 1192, 1309, 1537, 1540
Ple19I	CGATCG	1 cut(s)	1289
PleI	GAGTC	3 cut(s)	1066, 1260, 1468
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	3 cut(s)	1066, 1260, 1468
PpuMI	RGGWCCY	1 cut(s)	1168
PscI	ACATGT	1 cut(s)	1687
PsiI	TTATAA	1 cut(s)	1227
Psp5II	RGGWCCY	1 cut(s)	1168
Psp6I	CCWGG	1 cut(s)	137
PspFI	CCCAGC	3 cut(s)	182, 248, 322
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	5 cut(s)	7, 136, 951, 1170, 1672
PspPI	GGNCC	6 cut(s)	190, 451, 508, 1168, 1426, 1670
PspPPI	RGGWCCY	1 cut(s)	1168
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	1 cut(s)	968
PsyI	GACNNNGTC	3 cut(s)	340, 1057, 1145
PvuI	CGATCG	1 cut(s)	1289
PvuII	CAGCTG	2 cut(s)	1190, 1538
RsaI	GTAC	3 cut(s)	979, 1383, 1505
RsaNI	GTAC	3 cut(s)	978, 1382, 1504
RseI	CAYNNNNRTG	3 cut(s)	671, 1274, 1719
SatI	GCNGC	8 cut(s)	237, 278, 317, 320, 1191, 1308, 1536, 1539
Sau3AI	GATC	7 cut(s)	385, 814, 968, 1090, 1286, 1474, 1570
Sau96I	GGNCC	6 cut(s)	190, 451, 508, 1168, 1426, 1670
SchI	GAGTC	3 cut(s)	1067, 1260, 1469
ScrFI	CCNGG	3 cut(s)	139, 188, 223
SduI	GDGCHC	3 cut(s)	810, 1051, 1321
SfaNI	GCATC	4 cut(s)	628, 733, 1493, 1561
SfcI	CTRYAG	2 cut(s)	175, 1443
SfoI	GGCGCC	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	1300
SgrAI	CRCCGGYG	1 cut(s)	286
SinI	GGWCC	2 cut(s)	1168, 1670
SmiMI	CAYNNNNRTG	3 cut(s)	671, 1274, 1719
SmlI	CTYRAG	4 cut(s)	200, 818, 1194, 1559
SmoI	CTYRAG	4 cut(s)	200, 818, 1194, 1559
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	5 cut(s)	109, 564, 1065, 1222, 1751
SsiI	CCGC	5 cut(s)	275, 278, 316, 319, 1076
SspDI	GGCGCC	1 cut(s)	134
SspI	AATATT	3 cut(s)	594, 1260, 1417
SspMI	CTAG	2 cut(s)	423, 623
StyD4I	CCNGG	3 cut(s)	137, 186, 221
StyI	CCWWGG	4 cut(s)	411, 1112, 1211, 1738
TaaI	ACNGT	8 cut(s)	150, 365, 653, 754, 812, 1323, 1339, 1763
TaiI	ACGT	1 cut(s)	1781
TaqI	TCGA	3 cut(s)	1300, 1591, 1611
TasI	AATT	5 cut(s)	109, 564, 1065, 1222, 1751
TatI	WGTACW	1 cut(s)	1503
TauI	GCSGC	3 cut(s)	280, 319, 322
TscAI	CASTG	3 cut(s)	658, 1326, 1723
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	5 cut(s)	236, 1190, 1307, 1535, 1538
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	6 cut(s)	459, 1119, 1286, 1448, 1469, 1617
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	3 cut(s)	658, 1326, 1723
Tth111I	GACNNNGTC	3 cut(s)	340, 1057, 1145
Vha464I	CTTAAG	1 cut(s)	818
VneI	GTGCAC	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	1168, 1670
XagI	CCTNNNNNAGG	1 cut(s)	1301
XapI	RAATTY	1 cut(s)	1065
XceI	RCATGY	2 cut(s)	1589, 1691
XmiI	GTMKAC	3 cut(s)	470, 663, 839
XmnI	GAANNNNTTC	1 cut(s)	712
XspI	CTAG	2 cut(s)	423, 623
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.