Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Forward (+)

8650088 .. 8651153

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACAGCAGCTCAGGCTCTAAGTCATCCTTGGATCCGGAATTATAGTGACATAAAAGTGCCACTTGATATTTTAGTATTTAGACTCATGAAGGCTTATCTGCGATCATCATCCCTTCGGAAGGCTGCTTTAAGGGCCTTGTCTAAGACATTGACTGTGGATGAACTATTTTATCTGAAGGAGCAGTTTGCTCTATTGGAGCCAAACAAAAATGGCACTATAACTCTTGAAAATATTAGAATGGTCCTCACAAAAAATGCTACAGACGCAATGAAGGAGTCCCGCATTCCTGATCGATCATTTCATCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

10.06

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	28, 41
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	230
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AlwI	GGATC	2 cut(s)	28, 41
Aor13HI	TCCGGA	1 cut(s)	36
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	8, 125
AspS9I	GGNCC	2 cut(s)	135, 244
AvaII	GGWCC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	20, 112
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	2 cut(s)	9, 126
BlsI	GCNGC	2 cut(s)	10, 127
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	135, 244
BmiI	GGNNCC	2 cut(s)	35, 201
Bpu10I	CCTNAGC	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	3 cut(s)	25, 110, 166
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	20, 112
BshFI	GGCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	33, 104, 292, 296
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	25
BspDI	ATCGAT	1 cut(s)	295
BspEI	TCCGGA	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	35, 201
BspPI	GGATC	2 cut(s)	28, 41
BsrDI	GCAATG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	4 cut(s)	33, 104, 292, 296
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	12, 20, 144
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	25, 110, 166
BstKTI	GATC	4 cut(s)	36, 107, 295, 299
BstMBI	GATC	4 cut(s)	33, 104, 292, 296
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 134, 266
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	20, 112
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	25, 110, 166
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	135, 244
ClaI	ATCGAT	1 cut(s)	295
CseI	GACGC	1 cut(s)	275
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	11, 17, 95, 125, 137, 202
CviKI_1	RGCY	6 cut(s)	11, 17, 95, 125, 137, 202
DdeI	CTNAG	3 cut(s)	12, 20, 144
DpnI	GATC	4 cut(s)	35, 106, 294, 298
DpnII	GATC	4 cut(s)	33, 104, 292, 296
Eco130I	CCWWGG	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	1 cut(s)	91
FaiI	YATR	4 cut(s)	45, 53, 89, 221
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 48, 80
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	2 cut(s)	9, 126
FokI	GGATG	3 cut(s)	12, 97, 173
Fsp4HI	GCNGC	2 cut(s)	9, 126
GluI	GCNGC	2 cut(s)	9, 126
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	2 cut(s)	84, 278
HpaII	CCGG	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	120, 177
Hpy188III	TCNNGA	4 cut(s)	37, 88, 227, 290
HpyAV	CCTTC	5 cut(s)	85, 115, 125, 172, 268
HpyCH4III	ACNGT	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 134, 266
HpyF3I	CTNAG	3 cut(s)	12, 20, 144
Hsp92II	CATG	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	33, 104, 292, 296
LmnI	GCTCC	2 cut(s)	181, 199
LpnPI	CCDG	2 cut(s)	50, 303
Lsp1109I	GCAGC	2 cut(s)	20, 112
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	4 cut(s)	35, 106, 294, 298
MboI	GATC	4 cut(s)	33, 104, 292, 296
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	1 cut(s)	40
MlyI	GAGTC	2 cut(s)	78, 287
MnlI	CCTC	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	36
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	14, 134, 266
NdeII	GATC	4 cut(s)	33, 104, 292, 296
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	35, 201
NmuCI	GTSAC	1 cut(s)	47
PagI	TCATGA	1 cut(s)	87
PctI	GAATGC	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	10, 127
PleI	GAGTC	2 cut(s)	78, 286
PpsI	GAGTC	2 cut(s)	78, 286
PspN4I	GGNNCC	2 cut(s)	35, 201
PspPI	GGNCC	2 cut(s)	135, 244
PsuI	RGATCY	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	2 cut(s)	9, 126
Sau3AI	GATC	4 cut(s)	33, 104, 292, 296
Sau96I	GGNCC	2 cut(s)	135, 244
SchI	GAGTC	2 cut(s)	78, 287
SetI	ASST	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	261
SgeI	CNNG	9 cut(s)	26, 42, 49, 77, 100, 151, 239, 294, 302
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	283
SspI	AATATT	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	295
TasI	AATT	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	8, 125
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	4 cut(s)	104, 177, 287, 293
VpaK11BI	GGWCC	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.