Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

78131054 .. 78131882

Gene Structure 829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0584400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTAGAATCCTTCCTATCTCAGCTTTCCAATTCATCATAATCTCCTCCCTCCTGTCTTCCTTTTCTATGATCCTGGTTTCTGGGGAAGATCATGAGTTTGTGAAACCCATGGACCCCGAGCTTTTTGGTCTAAAGAAAGAAAAACTTACCCATTTTCGCTTGTATTGGCACGACATTGTTGATGGTCCTAATCCCACTGCCGTGACAGTAGTGCAACCCAACTCCTCCCAAACAAAGTTCGGAATGATAAGAATGATCGACAACCAGCTAACCTTAGGCCCCGAATCGAGCTCGAAGCTGTTGGGAAGGGCTCAAGGGTTTTATGCATCTGCATCACAACAAGACCTTAGTCTGTTGATGGCTCAGAACCTTGCATTTGTTCAGGGGAAGTATAACGGTAGCACCATAACCCTGATGGGAAGGAACTCGCTTTCCAACAAGGTAAGGGAGCTGTTGGTGATCGGAGGAAGTGGACTTTTCAGGTTTGCTAGGGGTTATGCTCTACTAACAACTCAGTCGTTTAACGCCTCTAAAAGTGATGACGCTGTGGTGGAGTATAACATCTATGTCTTGCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

194

Amino Acids

21.54

Weight (kDa)

8.83

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	51 - 191	5.4e-55	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	75
AleI	CACNNNNGTG	1 cut(s)	203
AloI	GAACNNNNNNTCC	2 cut(s)	419, 451
AluBI	AGCT	6 cut(s)	26, 124, 271, 294, 301, 454
AluI	AGCT	6 cut(s)	26, 124, 271, 294, 301, 454
Alw21I	GWGCWC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	115, 188, 281
AsuHPI	GGTGA	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	115, 188
AxyI	CCTNAGG	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	296, 316
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	296
BccI	CCATC	3 cut(s)	179, 355, 412
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	2 cut(s)	6, 492
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	115, 188
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	115, 188, 281
BmiI	GGNNCC	2 cut(s)	117, 283
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	338, 344
BoxI	GACNNNNGTC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	111
Bse21I	CCTNAGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	111
BseMII	CTCAG	3 cut(s)	36, 380, 530
BseRI	GAGGAG	2 cut(s)	37, 217
BshFI	GGCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	119
BsnI	GGCC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	296, 316
Bsp143I	GATC	4 cut(s)	72, 91, 258, 462
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	3 cut(s)	35, 379, 529
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	117, 283
BspPI	GGATC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	4 cut(s)	72, 91, 258, 462
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	211, 401
BstDEI	CTNAG	5 cut(s)	22, 277, 350, 366, 516
BstDSI	CCRYGG	1 cut(s)	111
BstKTI	GATC	4 cut(s)	75, 94, 261, 465
BstMBI	GATC	4 cut(s)	72, 91, 258, 462
BstNI	CCWGG	1 cut(s)	77
BstPAI	GACNNNNGTC	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	115, 188, 281
CseI	GACGC	1 cut(s)	554
CviAII	CATG	2 cut(s)	95, 112
DdeI	CTNAG	5 cut(s)	22, 277, 350, 366, 516
DpnI	GATC	4 cut(s)	74, 93, 260, 464
DpnII	GATC	4 cut(s)	72, 91, 258, 462
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	296, 316
Eco47I	GGWCC	2 cut(s)	115, 188
Eco53kI	GAGCTC	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	2 cut(s)	296, 316
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	2 cut(s)	98, 115
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	2 cut(s)	94, 111
FriOI	GRGCYC	2 cut(s)	296, 316
FspBI	CTAG	2 cut(s)	6, 492
HaeIII	GGCC	1 cut(s)	282
HgaI	GACGC	1 cut(s)	554
Hin1II	CATG	2 cut(s)	98, 115
HinfI	GANTC	2 cut(s)	9, 287
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	3 cut(s)	245, 369, 467
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	23, 303, 417
HpyCH4III	ACNGT	2 cut(s)	211, 401
HpyCH4V	TGCA	5 cut(s)	217, 329, 335, 377, 577
HpyF3I	CTNAG	5 cut(s)	22, 277, 350, 366, 516
Hsp92II	CATG	2 cut(s)	98, 115
Kzo9I	GATC	4 cut(s)	72, 91, 258, 462
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	8 cut(s)	62, 68, 69, 89, 281, 371, 428, 469
LweI	GCATC	2 cut(s)	338, 344
MaeI	CTAG	2 cut(s)	6, 492
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	4 cut(s)	74, 93, 260, 464
MboI	GATC	4 cut(s)	72, 91, 258, 462
MboII	GAAGA	2 cut(s)	51, 101
MhlI	GDGCHC	2 cut(s)	296, 316
MluCI	AATT	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	5 cut(s)	58, 62, 238, 461, 541
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	4 cut(s)	72, 91, 258, 462
NlaIII	CATG	2 cut(s)	98, 115
NlaIV	GGNNCC	2 cut(s)	117, 283
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	331
OliI	CACNNNNGTG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	9, 287
PshAI	GACNNNNGTC	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	117, 283
PspPI	GGNCC	3 cut(s)	115, 188, 281
RseI	CAYNNNNRTG	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	525
Sau3AI	GATC	4 cut(s)	72, 91, 258, 462
Sau96I	GGNCC	3 cut(s)	115, 188, 281
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	296, 316
SfaNI	GCATC	2 cut(s)	338, 344
SinI	GGWCC	2 cut(s)	115, 188
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	1 cut(s)	32
SspMI	CTAG	2 cut(s)	6, 492
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	211, 401
TaqI	TCGA	3 cut(s)	261, 290, 296
TasI	AATT	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	9, 287
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	115, 188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	6, 492
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.