Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

9837090 .. 9838565

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG084000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGTCAGGCACTGTCTAAGACATTGACTGTGGAAGAACTCTTTTATCTGAAGGAGCAGTTTGCACTATTAGTACCAAACAAGAATGGCACTATCACTCTTGACAATATTAGAATGGCCCTAATGAAAAATGCTACAGACGCAATGAAGGAGTCTCGCATTCCTGATCTTATTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTGTACATCAGCTTGAGGCACTTGATCGTTGGGAACAACATGCTCGATGTGCATATGAACTTTTCGAGAAGGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGGCTTGGTCCCTCCATTCCATTACATGTGGTTCTCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCACGGTGTGTCCAGCCGGACGTTTGTGAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

161

Amino Acids

18.29

Weight (kDa)

6.06

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	71, 330
AdeI	CACNNNGTG	2 cut(s)	239, 457
AfaI	GTAC	2 cut(s)	75, 243
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	194, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	3 cut(s)	230, 250, 426
AluI	AGCT	3 cut(s)	230, 250, 426
Alw26I	GTCTC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	227, 230
AspS9I	GGNCC	2 cut(s)	118, 362
AvaII	GGWCC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	217, 239
BccI	CCATC	2 cut(s)	305, 407
BcoDI	GTCTC	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	2 cut(s)	228, 231
BlsI	GCNGC	2 cut(s)	229, 232
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	2 cut(s)	118, 362
BmiI	GGNNCC	1 cut(s)	364
BmsI	GCATC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	217, 239
BsgI	GTGCAG	2 cut(s)	216, 246
BshFI	GGCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	166, 262
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	2 cut(s)	166, 262
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	15, 31, 455
BstAUI	TGTACA	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	18, 236, 422, 483
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	2 cut(s)	169, 265
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	166, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 287
BstNSI	RCATGY	2 cut(s)	281, 383
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	217, 239
BsuRI	GGCC	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	11, 408
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	118, 362
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	74, 242
CviAII	CATG	3 cut(s)	278, 380, 392
CviJI	RGCY	8 cut(s)	119, 230, 250, 323, 358, 426, 465, 481
CviKI_1	RGCY	8 cut(s)	119, 230, 250, 323, 358, 426, 465, 481
CviQI	GTAC	2 cut(s)	74, 242
DdeI	CTNAG	4 cut(s)	18, 236, 422, 483
DpnI	GATC	2 cut(s)	168, 264
DpnII	GATC	2 cut(s)	166, 262
DraIII	CACNNNGTG	2 cut(s)	239, 457
Eco130I	CCWWGG	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	71, 330
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	3 cut(s)	281, 383, 395
FaiI	YATR	5 cut(s)	279, 292, 294, 381, 393
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	277, 379, 391
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	228, 231
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	228, 231
GluI	GCNGC	2 cut(s)	228, 231
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	466
HgaI	GACGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	281, 383, 395
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	51, 349
Hpy188III	TCNNGA	3 cut(s)	101, 164, 304
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	46, 142, 301
HpyCH4III	ACNGT	3 cut(s)	15, 31, 455
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	7 cut(s)	65, 176, 188, 227, 233, 290, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 287
HpyF3I	CTNAG	4 cut(s)	18, 236, 422, 483
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	281, 383, 395
Kzo9I	GATC	2 cut(s)	166, 262
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	5 cut(s)	177, 304, 382, 475, 479
Lsp1109I	GCAGC	2 cut(s)	217, 239
LweI	GCATC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	470
MalI	GATC	2 cut(s)	168, 264
MboI	GATC	2 cut(s)	166, 262
MboII	GAAGA	3 cut(s)	47, 213, 347
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	3 cut(s)	208, 247, 376
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	140, 287
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	2 cut(s)	166, 262
NlaIII	CATG	3 cut(s)	281, 383, 395
NlaIV	GGNNCC	1 cut(s)	364
NspI	RCATGY	2 cut(s)	281, 383
PciI	ACATGT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	229, 232
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	118, 362
PstNI	CAGNNNCTG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	75, 243
RsaNI	GTAC	2 cut(s)	74, 242
RseI	CAYNNNNRTG	1 cut(s)	411
SatI	GCNGC	2 cut(s)	228, 231
Sau3AI	GATC	2 cut(s)	166, 262
Sau96I	GGNCC	2 cut(s)	118, 362
SchI	GAGTC	1 cut(s)	161
SetI	ASST	4 cut(s)	232, 252, 428, 473
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	443
SspI	AATATT	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	15, 31, 455
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	2 cut(s)	283, 303
TasI	AATT	1 cut(s)	443
TatI	WGTACW	1 cut(s)	241
TscAI	CASTG	2 cut(s)	18, 415
TseI	GCWGC	2 cut(s)	227, 230
TspDTI	ATGAA	3 cut(s)	140, 161, 309
TspRI	CASTG	2 cut(s)	18, 415
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	2 cut(s)	281, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.