Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009697.1

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Forward (+)

636 .. 1307

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009697.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgggaacctgcacctcaaaaccaccaaagccaaacccctacgcctccagagacccaaatgacccatctcacccttcccaaacccccaaatccataaccccccaccacaattccaaagacgacgccgtttccgccgccagacagtcccagtcacagtcccagtcgccgttcttccccttctacagccccagcccggcccattacctcaagaagtccccggcgacgacccggagcaagagcgctgcctccacgcccagccggtttttccggcgacccttcccgccgccgtcgccggcgaagcacattaaggccgtgctggcgcggcggctggggaaaaaggcgacggcttcggtggcgataccggaggacggtgaagatgaggatggggttgatctggacaagaggtttgggttctccaaggagttaactagtagactggaggttggggatgaagtgggccgagggcattttgggtatacttgctctgctgtgttcaaaaagggtgagtttaagggccagcaggtagctgttaaagtcatccctaaagcaaaggttggtgctttctttacctttatctccctagagttggatttcactgcttccatttgcttcatttttgggataaagttttattctttttttcattcttcgacgttgaagttgagactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

223

Amino Acids

24.5

Weight (kDa)

9.82

Isoelectric Point (pI)

61.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	17, 511
AccI	GTMKAC	2 cut(s)	433, 476
AccII	CGCG	1 cut(s)	322
AciI	CCGC	6 cut(s)	132, 135, 281, 284, 322, 325
AcyI	GRCGYC	1 cut(s)	123
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	3 cut(s)	193, 368, 586
AgsI	TTSAA	2 cut(s)	496, 658
AhlI	ACTAGT	1 cut(s)	428
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	2 cut(s)	45, 658
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	4 cut(s)	195, 309, 457, 514
ApeKI	GCWGC	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspLEI	GCGC	2 cut(s)	242, 322
AspS9I	GGNCC	3 cut(s)	196, 457, 514
AsuC2I	CCSGG	3 cut(s)	194, 218, 229
AsuHPI	GGTGA	3 cut(s)	62, 383, 515
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	2 cut(s)	73, 377
BceAI	ACGGC	5 cut(s)	110, 151, 271, 296, 360
BcnI	CCSGG	3 cut(s)	194, 218, 229
BcoDI	GTCTC	2 cut(s)	45, 658
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	2 cut(s)	429, 581
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	243
BfuAI	ACCTGC	2 cut(s)	17, 511
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	5 cut(s)	135, 243, 284, 323, 326
BlsI	GCNGC	5 cut(s)	136, 244, 285, 324, 327
Bme1390I	CCNGG	3 cut(s)	194, 218, 229
BmgT120I	GGNCC	3 cut(s)	196, 457, 514
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	3 cut(s)	194, 218, 229
BmrI	ACTGGG	2 cut(s)	142, 154
BmuI	ACTGGG	2 cut(s)	142, 154
BpmI	CTGGAG	2 cut(s)	31, 458
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	3 cut(s)	194, 218, 229
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	216, 417, 460
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 368, 586
Bse118I	RCCGGY	2 cut(s)	258, 292
Bse1I	ACTGG	3 cut(s)	148, 160, 441
BseDI	CCNNGG	3 cut(s)	216, 417, 460
BseGI	GGATG	3 cut(s)	388, 454, 537
BseLI	CCNNNNNNNGG	3 cut(s)	193, 368, 586
BseNI	ACTGG	3 cut(s)	148, 160, 441
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	3 cut(s)	188, 254, 328
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	4 cut(s)	197, 311, 459, 516
BsiSI	CCGG	7 cut(s)	194, 218, 229, 259, 268, 293, 362
BslFI	GGGAC	3 cut(s)	130, 142, 199
BslI	CCNNNNNNNGG	3 cut(s)	193, 368, 586
BsmAI	GTCTC	2 cut(s)	45, 658
BsmFI	GGGAC	3 cut(s)	130, 142, 199
BsnI	GGCC	4 cut(s)	197, 311, 459, 516
Bso31I	GGTCTC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	6 cut(s)	132, 135, 281, 284, 322, 325
BspANI	GGCC	4 cut(s)	197, 311, 459, 516
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	2 cut(s)	17, 511
BspTNI	GGTCTC	1 cut(s)	45
BsrFI	RCCGGY	2 cut(s)	258, 292
BsrI	ACTGG	3 cut(s)	148, 160, 441
BssAI	RCCGGY	2 cut(s)	258, 292
BssECI	CCNNGG	3 cut(s)	216, 417, 460
BssMI	GATC	1 cut(s)	391
BssNAI	GTATAC	1 cut(s)	477
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	144, 156, 371
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	294, 318, 518
BstF5I	GGATG	3 cut(s)	388, 454, 537
BstFNI	CGCG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	242, 322
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	2 cut(s)	45, 658
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 289, 298, 317, 322, 353
BstSCI	CCNGG	3 cut(s)	192, 216, 227
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	229
BstZ17I	GTATAC	1 cut(s)	477
BsuRI	GGCC	4 cut(s)	197, 311, 459, 516
BtsCI	GGATG	3 cut(s)	388, 454, 537
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	594
BveI	ACCTGC	2 cut(s)	17, 511
Cac8I	GCNNGC	3 cut(s)	294, 318, 518
CfoI	GCGC	2 cut(s)	242, 322
Cfr10I	RCCGGY	2 cut(s)	258, 292
Cfr13I	GGNCC	3 cut(s)	196, 457, 514
CseI	GACGC	1 cut(s)	131
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	45
Eco47III	AGCGCT	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaiI	YATR	2 cut(s)	95, 477
FaqI	GGGAC	3 cut(s)	130, 142, 199
FauI	CCCGC	1 cut(s)	288
FblI	GTMKAC	2 cut(s)	433, 476
Fnu4HI	GCNGC	5 cut(s)	135, 243, 284, 323, 326
FokI	GGATG	3 cut(s)	395, 461, 524
Fsp4HI	GCNGC	5 cut(s)	135, 243, 284, 323, 326
FspBI	CTAG	2 cut(s)	429, 581
GlaI	GCGC	2 cut(s)	241, 321
GluI	GCNGC	5 cut(s)	135, 243, 284, 323, 326
GsaI	CCCAGC	3 cut(s)	192, 258, 332
GsuI	CTGGAG	2 cut(s)	31, 458
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	197, 311, 459, 516
HapII	CCGG	7 cut(s)	194, 218, 229, 259, 268, 293, 362
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	242, 322
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	2 cut(s)	240, 320
HinP1I	GCGC	2 cut(s)	240, 320
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HpaI	GTTAAC	1 cut(s)	426
HpaII	CCGG	7 cut(s)	194, 218, 229, 259, 268, 293, 362
HphI	GGTGA	3 cut(s)	62, 383, 515
Hpy166II	GTNNAC	3 cut(s)	426, 434, 477
Hpy188III	TCNNGA	3 cut(s)	48, 208, 395
Hpy8I	GTNNAC	3 cut(s)	426, 434, 477
Hpy99I	CGWCG	5 cut(s)	125, 226, 292, 346, 655
HpyAV	CCTTC	3 cut(s)	84, 187, 286
HpyCH4III	ACNGT	3 cut(s)	144, 156, 371
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 289, 298, 317, 322, 353
HpySE526I	ACGT	1 cut(s)	653
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	2 cut(s)	240, 320
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
KspAI	GTTAAC	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	429, 581
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	163, 386, 639
MluCI	AATT	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	9 cut(s)	25, 55, 215, 256, 358, 373, 396, 433, 455
MreI	CGCCGGCG	1 cut(s)	292
MroNI	GCCGGC	1 cut(s)	292
MseI	TTAA	4 cut(s)	306, 425, 510, 531
MspI	CCGG	7 cut(s)	194, 218, 229, 259, 268, 293, 362
MspR9I	CCNGG	3 cut(s)	194, 218, 229
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	6 cut(s)	131, 289, 298, 317, 322, 353
NaeI	GCCGGC	1 cut(s)	294
NciI	CCSGG	3 cut(s)	194, 218, 229
NdeII	GATC	1 cut(s)	391
NgoMIV	GCCGGC	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	136, 244, 285, 324, 327
PspFI	CCCAGC	3 cut(s)	188, 254, 328
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	3 cut(s)	196, 457, 514
SaqAI	TTAA	4 cut(s)	306, 425, 510, 531
SatI	GCNGC	5 cut(s)	135, 243, 284, 323, 326
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	3 cut(s)	196, 457, 514
ScrFI	CCNGG	3 cut(s)	194, 218, 229
SfcI	CTRYAG	1 cut(s)	181
SgrAI	CRCCGGYG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	6 cut(s)	132, 135, 281, 284, 322, 325
SspMI	CTAG	2 cut(s)	429, 581
StyD4I	CCNGG	3 cut(s)	192, 216, 227
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	144, 156, 371
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	1 cut(s)	650
TasI	AATT	1 cut(s)	109
TauI	GCSGC	4 cut(s)	137, 286, 325, 328
Tru1I	TTAA	4 cut(s)	306, 425, 510, 531
Tru9I	TTAA	4 cut(s)	306, 425, 510, 531
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	3 cut(s)	465, 601, 632
TspRI	CASTG	1 cut(s)	601
XmiI	GTMKAC	2 cut(s)	433, 476
XspI	CTAG	2 cut(s)	429, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.