Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

14986910 .. 15007551

Gene Structure 20642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACAGCTGCTCAAGCATTAAGTCATCCTTGGATGAGGAATTATAATGATGTAAAAGTGCCTCTTGATATTTTAATATTTAGACTCATGAAGATGTATATGCGATCGTCATCCCTTCGAAAGGCTGCTTTAAGGGCACTGTCTAAGACATTGACTGTGGAAGAACTCTATTATCTGAAGGAGCAGTTTGCACTATTAGTACCAAACAAGAATGGCACTATCACTCTTGACAATATTAGAATGTCCCTAATGAAAAATGCTACAGACGCAATGAAGGAGTCTCGCATTCCTGATCTTATTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTGATGGAAACAGGGCCATTGTCATTGAAGAACTTGCTTCAGAACTTGGGCTTGGTCCCTCCATTCCATTACATGTGGTTCTCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCACGGTGTGTCCAGCCGGACGTTTGTGAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

180

Amino Acids

20.41

Weight (kDa)

9.41

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AcuI	CTGAAG	2 cut(s)	197, 387
AdeI	CACNNNGTG	2 cut(s)	365, 514
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	320, 392
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	3 cut(s)	8, 356, 483
AluI	AGCT	3 cut(s)	8, 356, 483
Alw26I	GTCTC	1 cut(s)	285
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	4 cut(s)	8, 125, 353, 356
AspS9I	GGNCC	2 cut(s)	378, 419
AsuII	TTCGAA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	112, 343, 365
BccI	CCATC	2 cut(s)	362, 464
BcoDI	GTCTC	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	4 cut(s)	9, 126, 354, 357
BlsI	GCNGC	4 cut(s)	10, 127, 355, 358
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	378, 419
BmiI	GGNNCC	1 cut(s)	421
BmsI	GCATC	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	29, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	29, 487
BseGI	GGATG	3 cut(s)	25, 39, 110
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	112, 343, 365
BsgI	GTGCAG	2 cut(s)	342, 372
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	2 cut(s)	229, 405
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	2 cut(s)	229, 405
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	104, 292
BspANI	GGCC	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	421
BspT104I	TTCGAA	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	29, 487
BssMI	GATC	2 cut(s)	104, 292
BssT1I	CCWWGG	2 cut(s)	29, 487
Bst4CI	ACNGT	3 cut(s)	141, 157, 512
BstBI	TTCGAA	1 cut(s)	118
BstDEI	CTNAG	4 cut(s)	144, 362, 479, 540
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	25, 39, 110
BstKTI	GATC	2 cut(s)	107, 295
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	2 cut(s)	104, 292
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 134, 266
BstNSI	RCATGY	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	112, 343, 365
BsuRI	GGCC	1 cut(s)	380
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	25, 39, 110
BtsIMutI	CAGTG	2 cut(s)	137, 465
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	378, 419
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	3 cut(s)	88, 437, 449
CviJI	RGCY	8 cut(s)	8, 125, 356, 380, 415, 483, 522, 538
CviKI_1	RGCY	8 cut(s)	8, 125, 356, 380, 415, 483, 522, 538
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	4 cut(s)	144, 362, 479, 540
DpnI	GATC	2 cut(s)	106, 294
DpnII	GATC	2 cut(s)	104, 292
DraIII	CACNNNGTG	2 cut(s)	365, 514
Eco130I	CCWWGG	2 cut(s)	29, 487
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	197, 387
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoT14I	CCWWGG	2 cut(s)	29, 487
ErhI	CCWWGG	2 cut(s)	29, 487
FaeI	CATG	3 cut(s)	91, 440, 452
FaiI	YATR	6 cut(s)	45, 89, 99, 101, 438, 450
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 48, 80
FaqI	GGGAC	2 cut(s)	229, 405
FatI	CATG	3 cut(s)	87, 436, 448
Fnu4HI	GCNGC	4 cut(s)	9, 126, 354, 357
FokI	GGATG	3 cut(s)	12, 46, 97
Fsp4HI	GCNGC	4 cut(s)	9, 126, 354, 357
GluI	GCNGC	4 cut(s)	9, 126, 354, 357
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	523
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	91, 440, 452
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	2 cut(s)	84, 278
HpaII	CCGG	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	177, 406
Hpy188III	TCNNGA	4 cut(s)	65, 88, 227, 290
HpyAV	CCTTC	3 cut(s)	125, 172, 268
HpyCH4III	ACNGT	3 cut(s)	141, 157, 512
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	6 cut(s)	191, 302, 314, 353, 359, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 134, 266
HpyF3I	CTNAG	4 cut(s)	144, 362, 479, 540
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	91, 440, 452
Kzo9I	GATC	2 cut(s)	104, 292
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	303, 361, 439, 532, 536
Lsp1109I	GCAGC	3 cut(s)	112, 343, 365
LweI	GCATC	1 cut(s)	311
MaeII	ACGT	1 cut(s)	527
MalI	GATC	2 cut(s)	106, 294
MboI	GATC	2 cut(s)	104, 292
MboII	GAAGA	4 cut(s)	103, 173, 339, 404
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	2 cut(s)	40, 500
MlyI	GAGTC	2 cut(s)	78, 287
MnlI	CCTC	4 cut(s)	30, 72, 334, 433
MseI	TTAA	3 cut(s)	20, 74, 131
MslI	CAYNNNNRTG	2 cut(s)	92, 468
MspA1I	CMGCKG	2 cut(s)	8, 356
MspI	CCGG	1 cut(s)	523
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	14, 134, 266
NdeII	GATC	2 cut(s)	104, 292
NlaIII	CATG	3 cut(s)	91, 440, 452
NlaIV	GGNNCC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	440
NspV	TTCGAA	1 cut(s)	118
PagI	TCATGA	1 cut(s)	87
PciI	ACATGT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	10, 127, 355, 358
Ple19I	CGATCG	1 cut(s)	107
PleI	GAGTC	2 cut(s)	78, 286
PpsI	GAGTC	2 cut(s)	78, 286
PscI	ACATGT	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	378, 419
PvuI	CGATCG	1 cut(s)	107
PvuII	CAGCTG	2 cut(s)	8, 356
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	2 cut(s)	92, 468
SaqAI	TTAA	3 cut(s)	20, 74, 131
SatI	GCNGC	4 cut(s)	9, 126, 354, 357
Sau3AI	GATC	2 cut(s)	104, 292
Sau96I	GGNCC	2 cut(s)	378, 419
SchI	GAGTC	2 cut(s)	78, 287
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	4 cut(s)	10, 358, 485, 530
SfaNI	GCATC	1 cut(s)	311
SfcI	CTRYAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	118
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	92, 468
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	40, 500
SspI	AATATT	2 cut(s)	78, 235
StyI	CCWWGG	2 cut(s)	29, 487
TaaI	ACNGT	3 cut(s)	141, 157, 512
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	118
TasI	AATT	2 cut(s)	40, 500
Tru1I	TTAA	3 cut(s)	20, 74, 131
Tru9I	TTAA	3 cut(s)	20, 74, 131
TscAI	CASTG	2 cut(s)	144, 472
TseI	GCWGC	4 cut(s)	8, 125, 353, 356
TspDTI	ATGAA	3 cut(s)	104, 266, 287
TspRI	CASTG	2 cut(s)	144, 472
VpaK11BI	GGWCC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	119
XceI	RCATGY	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.