Rmu_sc0004485.1_g000023

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004485.1
Physical Location & Seq
Reverse (-)
134284 .. 140656
6373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004485.1_g000023.1.cds

Sequence Viewer

Length: 1425 bp
atgcccctcccaagaccccatattccaacccagtccttccgcttcgctccctccgatgcccttctcgccgacaaagcaatcacctacctcaagcgccacccccacaacctcaactctctctcttcccatttcacccctgaagccgcctcctgcttactcctcaagtcccaattcgaccaaaccctaaccctaaagttcctcacccgcttcaagctctacaagtccgcccaggccctcgccgaggacgtcgccgtcaacaccgtcgacgacaggggcaatttggtctttcagtgcctcacggactcgctgcaggtctgcaattccagctcggcggttttcgacttggtggtgaagtcttactctcatttgaatttcgttgataaagctattaacattgttaacttagctaaagctcatggatttatgcccggtgtgctttcgtataatgcgattttagatgctgtgattaggtctagagggtctgctcagtttgctgaggaggtttttagtgagatgattaggaatggggtttcgccgaatgtgtatacatataacattttgattagggattttgccaaaccagatgagaggcttaatgatattgtcggaagtgcatactacgtggctcctgaggttctacatagatcttatagtacagaggctgatgtatggagtataggtgtaatagcatatattcttttatgtggtagtcggccattttgggctcggacagagtctggaatttttcgggcggtcttgaaagctgatcccagttttgatgaagcaccttggccttcgttatctgttgaagcgaaggactttgtcaaacgcttattaaataaggaccctcggaagcgaatgacagctgctcaagcattaagtcatccttggatgaggaattataatgatgtaaaagtgcctcttgatattttaatatttagactcatgaagatgtatatgcgatcgtcatcccttcgaaaggctgctttaagggcactgtctaagacattgactgtggaagaactctattatctgaaggagcagtttgcactattagccctaatgaaaaatgctacagacgcaatgaaggagtcttgcattcctgatcttattgcatcgctaaatgcacttcaatacagaaaaatggattttgaggagttctgtgcagctgcactaagtgtacatcagcttgaggcacttgatcgttgcgaacaacatgctcaatgtgcatatgaacttttcgagaaggaaggaaacagggccattgtcatcgaacaacttgcttcagaacttgggcttggtccctccattccattacatgtggttatccatgactggattaggcacactgatgggaaactaagcttccttggatttgtaaaattgttgcacggtgtgtccagccggacgtttgtgaaggcttag

Protein Analysis

474

Amino Acids

53.38

Weight (kDa)

8.47

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 903
AasI GACNNNNNNGTC 1 cut(s) 251
AatII GACGTC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 301
AccI GTMKAC 2 cut(s) 264, 545
AciI CCGC 6 cut(s) 40, 144, 205, 225, 332, 752
AclWI GGATC 1 cut(s) 761
AcoI YGGCCR 1 cut(s) 713
AcsI RAATTY 2 cut(s) 370, 741
AcuI CTGAAG 3 cut(s) 159, 1055, 1269
AcyI GRCGYC 1 cut(s) 246
AdeI CACNNNGTG 2 cut(s) 1178, 1396
AfaI GTAC 2 cut(s) 655, 1182
AfiI CCNNNNNNNGG 2 cut(s) 241, 979
AflIII ACRYGT 1 cut(s) 1318
AgsI TTSAA 5 cut(s) 211, 370, 760, 809, 1133
AjnI CCWGG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 1281, 1313
AlwI GGATC 1 cut(s) 761
AlwNI CAGNNNCTG 2 cut(s) 662, 737
AoxI GGCC 4 cut(s) 231, 713, 791, 1260
ApeKI GCWGC 5 cut(s) 307, 866, 983, 1166, 1169
ApoI RAATTY 2 cut(s) 370, 741
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 4 cut(s) 232, 844, 1260, 1301
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 4 cut(s) 73, 124, 193, 361
AsuII TTCGAA 1 cut(s) 976
AvaII GGWCC 2 cut(s) 844, 1301
AxyI CCTNAGG 1 cut(s) 630
BaeGI GKGCMC 1 cut(s) 997
BanII GRGCYC 1 cut(s) 727
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 5 cut(s) 294, 853, 970, 1156, 1178
BccI CCATC 1 cut(s) 1346
BceAI ACGGC 1 cut(s) 236
BcgI CGANNNNNNTGC 4 cut(s) 1199, 1233, 1262, 1296
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 1 cut(s) 429
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 2 cut(s) 308, 1074
BfoI RGCGCY 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 301
BglII AGATCT 1 cut(s) 644
BisI GCNGC 6 cut(s) 144, 308, 867, 984, 1167, 1170
BlsI GCNGC 6 cut(s) 145, 309, 868, 985, 1168, 1171
Bme1390I CCNGG 2 cut(s) 230, 429
Bme18I GGWCC 2 cut(s) 844, 1301
BmgT120I GGNCC 4 cut(s) 232, 844, 1260, 1301
BmiI GGNNCC 3 cut(s) 627, 846, 1303
BmrFI CCNGG 2 cut(s) 230, 429
BmrI ACTGGG 2 cut(s) 25, 765
BmsI GCATC 3 cut(s) 46, 448, 1124
BmuI ACTGGG 2 cut(s) 25, 765
Bpu10I CCTNAGC 1 cut(s) 495
Bpu14I TTCGAA 1 cut(s) 976
BpuEI CTTGAG 4 cut(s) 74, 146, 855, 1211
BpuMI CCSGG 1 cut(s) 429
BsaAI YACGTR 1 cut(s) 622
BsaBI GATNNNNATC 1 cut(s) 967
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 6 cut(s) 228, 240, 788, 848, 887, 1369
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 979
Bse1I ACTGG 3 cut(s) 31, 771, 1340
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 1 cut(s) 1089
Bse8I GATNNNNATC 1 cut(s) 967
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 6 cut(s) 228, 240, 788, 848, 887, 1369
BseGI GGATG 3 cut(s) 883, 897, 968
BseJI GATNNNNATC 1 cut(s) 967
BseLI CCNNNNNNNGG 2 cut(s) 241, 979
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 3 cut(s) 486, 500, 621
BseNI ACTGG 3 cut(s) 31, 771, 1340
BseRI GAGGAG 3 cut(s) 149, 512, 1169
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 5 cut(s) 294, 853, 970, 1156, 1178
BsgI GTGCAG 2 cut(s) 1155, 1185
Bsh1285I CGRYCG 1 cut(s) 965
BshFI GGCC 4 cut(s) 233, 715, 793, 1262
BsiEI CGRYCG 1 cut(s) 965
BsiSI CCGG 2 cut(s) 429, 1405
BslFI GGGAC 2 cut(s) 151, 1287
BslI CCNNNNNNNGG 2 cut(s) 241, 979
BsmFI GGGAC 2 cut(s) 151, 1287
BsmI GAATGC 1 cut(s) 1098
BsnI GGCC 4 cut(s) 233, 715, 793, 1262
Bsp119I TTCGAA 1 cut(s) 976
Bsp1286I GDGCHC 2 cut(s) 727, 997
Bsp1407I TGTACA 1 cut(s) 1180
Bsp143I GATC 5 cut(s) 644, 766, 962, 1105, 1201
BspACI CCGC 6 cut(s) 40, 144, 205, 225, 332, 752
BspANI GGCC 4 cut(s) 233, 715, 793, 1262
BspCNI CTCAG 3 cut(s) 487, 499, 622
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 3 cut(s) 627, 846, 1303
BspMAI CTGCAG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 1 cut(s) 761
BspT104I TTCGAA 1 cut(s) 976
BsrDI GCAATG 1 cut(s) 1089
BsrGI TGTACA 1 cut(s) 1180
BsrI ACTGG 3 cut(s) 31, 771, 1340
BssECI CCNNGG 6 cut(s) 228, 240, 788, 848, 887, 1369
BssMI GATC 5 cut(s) 644, 766, 962, 1105, 1201
BssNAI GTATAC 1 cut(s) 546
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 3 cut(s) 788, 887, 1369
Bst1107I GTATAC 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 4 cut(s) 262, 999, 1015, 1394
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 246
BstAUI TGTACA 1 cut(s) 1180
BstBAI YACGTR 1 cut(s) 622
BstBI TTCGAA 1 cut(s) 976
BstDEI CTNAG 8 cut(s) 403, 486, 495, 630, 1002, 1175, 1361, 1422
BstENI CCTNNNNNAGG 2 cut(s) 239, 977
BstF5I GGATG 3 cut(s) 883, 897, 968
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 647, 769, 965, 1108, 1204
BstMBI GATC 5 cut(s) 644, 766, 962, 1105, 1201
BstMCI CGRYCG 1 cut(s) 965
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 2 cut(s) 1220, 1322
BstSCI CCNGG 2 cut(s) 228, 427
BstSFI CTRYAG 2 cut(s) 308, 1074
BstSLI GKGCMC 1 cut(s) 997
BstV1I GCAGC 5 cut(s) 294, 853, 970, 1156, 1178
BstX2I RGATCY 1 cut(s) 644
BstYI RGATCY 1 cut(s) 644
BstZ17I GTATAC 1 cut(s) 546
Bsu36I CCTNAGG 1 cut(s) 630
BsuRI GGCC 4 cut(s) 233, 715, 793, 1262
BtgZI GCGATG 1 cut(s) 1101
BtsCI GGATG 3 cut(s) 883, 897, 968
BtsIMutI CAGTG 3 cut(s) 296, 995, 1347
BveI ACCTGC 1 cut(s) 301
CaiI CAGNNNCTG 2 cut(s) 662, 737
CciI TCATGA 1 cut(s) 945
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 4 cut(s) 232, 844, 1260, 1301
CseI GACGC 1 cut(s) 1088
Csp6I GTAC 2 cut(s) 654, 1181
CviAII CATG 5 cut(s) 416, 946, 1217, 1319, 1331
CviQI GTAC 2 cut(s) 654, 1181
DdeI CTNAG 8 cut(s) 403, 486, 495, 630, 1002, 1175, 1361, 1422
DpnI GATC 5 cut(s) 646, 768, 964, 1107, 1203
DpnII GATC 5 cut(s) 644, 766, 962, 1105, 1201
DraIII CACNNNGTG 2 cut(s) 1178, 1396
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 713
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 214
Eco130I CCWWGG 3 cut(s) 788, 887, 1369
Eco24I GRGCYC 1 cut(s) 727
Eco47I GGWCC 2 cut(s) 844, 1301
Eco57I CTGAAG 3 cut(s) 159, 1055, 1269
Eco81I CCTNAGG 1 cut(s) 630
EcoNI CCTNNNNNAGG 2 cut(s) 239, 977
EcoO109I RGGNCCY 2 cut(s) 232, 844
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 3 cut(s) 788, 887, 1369
EcoT38I GRGCYC 1 cut(s) 727
ErhI CCWWGG 3 cut(s) 788, 887, 1369
FaeI CATG 5 cut(s) 419, 949, 1220, 1322, 1334
FalI AAGNNNNNCTT 4 cut(s) 871, 903, 906, 938
FaqI GGGAC 2 cut(s) 151, 1287
FatI CATG 5 cut(s) 415, 945, 1216, 1318, 1330
FauI CCCGC 1 cut(s) 212
FauNDI CATATG 1 cut(s) 1231
FblI GTMKAC 2 cut(s) 264, 545
Fnu4HI GCNGC 6 cut(s) 144, 308, 867, 984, 1167, 1170
FokI GGATG 3 cut(s) 870, 904, 955
FriOI GRGCYC 1 cut(s) 727
Fsp4HI GCNGC 6 cut(s) 144, 308, 867, 984, 1167, 1170
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 95
GluI GCNGC 6 cut(s) 144, 308, 867, 984, 1167, 1170
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 4 cut(s) 233, 715, 793, 1262
HapII CCGG 2 cut(s) 429, 1405
HgaI GACGC 1 cut(s) 1088
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 5 cut(s) 419, 949, 1220, 1322, 1334
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 3 cut(s) 256, 265, 400
HindII GTYRAC 3 cut(s) 256, 265, 400
HindIII AAGCTT 1 cut(s) 1363
HinfI GANTC 4 cut(s) 302, 734, 942, 1091
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 2 cut(s) 429, 1405
HphI GGTGA 4 cut(s) 73, 124, 193, 361
Hpy166II GTNNAC 5 cut(s) 256, 265, 400, 546, 1181
Hpy188I TCNGA 6 cut(s) 55, 608, 729, 852, 1035, 1288
Hpy188III TCNNGA 8 cut(s) 474, 629, 738, 757, 923, 946, 1103, 1243
Hpy8I GTNNAC 5 cut(s) 256, 265, 400, 546, 1181
Hpy99I CGWCG 3 cut(s) 251, 266, 269
HpyCH4III ACNGT 4 cut(s) 262, 999, 1015, 1394
HpyCH4IV ACGT 3 cut(s) 246, 621, 1409
HpyF3I CTNAG 8 cut(s) 403, 486, 495, 630, 1002, 1175, 1361, 1422
HpySE526I ACGT 3 cut(s) 246, 621, 1409
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 5 cut(s) 419, 949, 1220, 1322, 1334
HspAI GCGC 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 5 cut(s) 644, 766, 962, 1105, 1201
LmnI GCTCC 3 cut(s) 52, 631, 1039
Lsp1109I GCAGC 5 cut(s) 294, 853, 970, 1156, 1178
LweI GCATC 3 cut(s) 46, 448, 1124
MaeI CTAG 1 cut(s) 474
MaeII ACGT 3 cut(s) 246, 621, 1409
MalI GATC 5 cut(s) 646, 768, 964, 1107, 1203
MboI GATC 5 cut(s) 644, 766, 962, 1105, 1201
MboII GAAGA 3 cut(s) 114, 961, 1031
MflI RGATCY 1 cut(s) 644
MhlI GDGCHC 2 cut(s) 727, 997
MluCI AATT 7 cut(s) 170, 277, 319, 370, 741, 898, 1382
MlyI GAGTC 4 cut(s) 296, 743, 936, 1100
MmeI TCCRAC 2 cut(s) 50, 586
MseI TTAA 7 cut(s) 390, 399, 594, 836, 878, 932, 989
MslI CAYNNNNRTG 2 cut(s) 950, 1350
MspA1I CMGCKG 2 cut(s) 866, 1169
MspI CCGG 2 cut(s) 429, 1405
MspR9I CCNGG 2 cut(s) 230, 429
Mva1269I GAATGC 1 cut(s) 1098
MvaI CCWGG 1 cut(s) 230
NciI CCSGG 1 cut(s) 429
NdeI CATATG 1 cut(s) 1231
NdeII GATC 5 cut(s) 644, 766, 962, 1105, 1201
NlaIII CATG 5 cut(s) 419, 949, 1220, 1322, 1334
NlaIV GGNNCC 3 cut(s) 627, 846, 1303
NmeAIII GCCGAG 2 cut(s) 265, 308
NspI RCATGY 2 cut(s) 1220, 1322
NspV TTCGAA 1 cut(s) 976
PagI TCATGA 1 cut(s) 945
PciI ACATGT 1 cut(s) 1318
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 243, 446
PctI GAATGC 1 cut(s) 1098
PflFI GACNNNGTC 2 cut(s) 733, 821
PkrI GCNGC 6 cut(s) 145, 309, 868, 985, 1168, 1171
Ple19I CGATCG 1 cut(s) 965
PleI GAGTC 4 cut(s) 296, 742, 936, 1099
PpsI GAGTC 4 cut(s) 296, 742, 936, 1099
Ppu21I YACGTR 1 cut(s) 622
PpuMI RGGWCCY 1 cut(s) 844
PscI ACATGT 1 cut(s) 1318
PsiI TTATAA 1 cut(s) 903
Psp5II RGGWCCY 1 cut(s) 844
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 627, 846, 1303
PspPI GGNCC 4 cut(s) 232, 844, 1260, 1301
PspPPI RGGWCCY 1 cut(s) 844
PstI CTGCAG 1 cut(s) 312
PstNI CAGNNNCTG 2 cut(s) 662, 737
PsuI RGATCY 1 cut(s) 644
PsyI GACNNNGTC 2 cut(s) 733, 821
PvuI CGATCG 1 cut(s) 965
PvuII CAGCTG 2 cut(s) 866, 1169
RsaI GTAC 2 cut(s) 655, 1182
RsaNI GTAC 2 cut(s) 654, 1181
RseI CAYNNNNRTG 2 cut(s) 950, 1350
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 7 cut(s) 390, 399, 594, 836, 878, 932, 989
SatI GCNGC 6 cut(s) 144, 308, 867, 984, 1167, 1170
Sau3AI GATC 5 cut(s) 644, 766, 962, 1105, 1201
Sau96I GGNCC 4 cut(s) 232, 844, 1260, 1301
SchI GAGTC 4 cut(s) 296, 743, 936, 1100
ScrFI CCNGG 2 cut(s) 230, 429
SduI GDGCHC 2 cut(s) 727, 997
SfaNI GCATC 3 cut(s) 46, 448, 1124
SfcI CTRYAG 2 cut(s) 308, 1074
SfuI TTCGAA 1 cut(s) 976
SgrDI CGTCGACG 1 cut(s) 263
SinI GGWCC 2 cut(s) 844, 1301
SmiMI CAYNNNNRTG 2 cut(s) 950, 1350
SmlI CTYRAG 4 cut(s) 89, 161, 870, 1190
SmoI CTYRAG 4 cut(s) 89, 161, 870, 1190
Sse9I AATT 7 cut(s) 170, 277, 319, 370, 741, 898, 1382
SsiI CCGC 6 cut(s) 40, 144, 205, 225, 332, 752
SspI AATATT 1 cut(s) 936
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 2 cut(s) 228, 427
StyI CCWWGG 3 cut(s) 788, 887, 1369
TaaI ACNGT 4 cut(s) 262, 999, 1015, 1394
TaiI ACGT 3 cut(s) 249, 624, 1412
TaqI TCGA 6 cut(s) 174, 264, 339, 976, 1242, 1272
TasI AATT 7 cut(s) 170, 277, 319, 370, 741, 898, 1382
TatI WGTACW 2 cut(s) 653, 1180
TauI GCSGC 1 cut(s) 146
Tru1I TTAA 7 cut(s) 390, 399, 594, 836, 878, 932, 989
Tru9I TTAA 7 cut(s) 390, 399, 594, 836, 878, 932, 989
TscAI CASTG 3 cut(s) 296, 1002, 1354
TseI GCWGC 5 cut(s) 307, 866, 983, 1166, 1169
TspDTI ATGAA 5 cut(s) 795, 962, 1079, 1100, 1248
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 296, 1002, 1354
Tth111I GACNNNGTC 2 cut(s) 733, 821
VpaK11BI GGWCC 2 cut(s) 844, 1301
XagI CCTNNNNNAGG 2 cut(s) 239, 977
XapI RAATTY 2 cut(s) 370, 741
XbaI TCTAGA 1 cut(s) 473
XceI RCATGY 2 cut(s) 1220, 1322
XmiI GTMKAC 2 cut(s) 264, 545
XspI CTAG 1 cut(s) 474
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.