Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

14251631 .. 14255554

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23214

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGATGCAAAGACTGTTGCATTTTGTCATCTGCAGGGTGTGGTGCACCGTGATCTTAAGCCAGAGTGCACAGAACTTTTTGTATACTGCTAAGGATGAGGATTCGCCATTGAAAGCCATTGACTTTGGCCTATCAGATTTTTGCCAACCCAGGTTTAAGCTTAATGATATTGTCAGAAGTGCATACTACGTGGTTCCTGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTATGGAGTATAGGTGTAATAGCATATATTCTTTTATGTGGTAGTCGGCCATTTTGGGCTCGGACAGAGTCTGGAATTTTTCGGGCGGTCTTGAAAGCTGATCCCAGTTTTGATGAAGCACCTTGGCCTTCGTTATCTGTTGAAGCGAAGGACTTTGTCAAACGCTTATTAAATAAGGACCCTCGGAAGCAAATGACAGCTGCTCAAGCATTAAGTCATCCTTGGATGAGGAATTATAATGATGTTAAAGTGCCTCTTGATATTTTAATATTTAGACTCATGAAGATGTATATGCGATCAATGGCCCTAATGAAAAATACTACAGACGCAATGAACGAGTCTCGCATTCCTGATCTTACTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTGAGGCGTTCTGTGCAGCTGCACTAAGTGTACATCAGCTTGAGGCACTTGATCGTTGGGAACAACATGCTCAATGTGCATATGAACTTTTCGAGAAGGATGGAAACAGGGCCATTGTCATTGAAGAACTTGCTTCAGAACTTGGGCTTGGTCCCTCCATTCCATTACATGTGGTTCTCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCACGGTGTGTCCAGCCGGACGTTTGTGAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

301

Amino Acids

34.52

Weight (kDa)

7.66

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	24 - 154	1.1e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	750
AdeI	CACNNNGTG	2 cut(s)	659, 877
AfaI	GTAC	2 cut(s)	223, 663
AflII	CTTAAG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	5 cut(s)	112, 328, 377, 614, 755
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	762, 794
AluBI	AGCT	6 cut(s)	160, 332, 434, 650, 670, 846
AluI	AGCT	6 cut(s)	160, 332, 434, 650, 670, 846
Alw21I	GWGCWC	2 cut(s)	47, 70
Alw26I	GTCTC	1 cut(s)	579
Alw44I	GTGCAC	2 cut(s)	43, 66
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	2 cut(s)	230, 305
AoxI	GGCC	5 cut(s)	127, 281, 359, 537, 741
ApaLI	GTGCAC	2 cut(s)	43, 66
ApeKI	GCWGC	3 cut(s)	434, 647, 650
ApoI	RAATTY	1 cut(s)	309
AspS9I	GGNCC	4 cut(s)	412, 538, 741, 782
AvaII	GGWCC	2 cut(s)	412, 782
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	2 cut(s)	47, 70
BanII	GRGCYC	1 cut(s)	295
Bbv12I	GWGCWC	2 cut(s)	47, 70
BbvI	GCAGC	3 cut(s)	421, 637, 659
BccI	CCATC	2 cut(s)	725, 827
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	579
BfmI	CTRYAG	2 cut(s)	31, 555
BfrI	CTTAAG	1 cut(s)	55
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	3 cut(s)	435, 648, 651
BlsI	GCNGC	3 cut(s)	436, 649, 652
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	2 cut(s)	412, 782
BmgT120I	GGNCC	4 cut(s)	412, 538, 741, 782
BmiI	GGNNCC	3 cut(s)	195, 414, 784
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	605
BmuI	ACTGGG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	423, 692
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	5 cut(s)	149, 356, 416, 455, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse1I	ACTGG	2 cut(s)	339, 821
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	5 cut(s)	149, 356, 416, 455, 850
BseGI	GGATG	4 cut(s)	100, 451, 465, 736
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	339, 821
BseSI	GKGCMC	2 cut(s)	47, 70
BseXI	GCAGC	3 cut(s)	421, 637, 659
BsgI	GTGCAG	2 cut(s)	636, 666
BshFI	GGCC	5 cut(s)	129, 283, 361, 539, 743
BsiHKAI	GWGCWC	2 cut(s)	47, 70
BsiSI	CCGG	1 cut(s)	886
BslFI	GGGAC	1 cut(s)	768
BsmAI	GTCTC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	768
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	5 cut(s)	129, 283, 361, 539, 743
Bsp1286I	GDGCHC	3 cut(s)	47, 70, 295
Bsp1407I	TGTACA	1 cut(s)	661
Bsp143I	GATC	6 cut(s)	51, 212, 334, 530, 586, 682
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	5 cut(s)	129, 283, 361, 539, 743
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	195, 414, 784
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	661
BsrI	ACTGG	2 cut(s)	339, 821
BssECI	CCNNGG	5 cut(s)	149, 356, 416, 455, 850
BssMI	GATC	6 cut(s)	51, 212, 334, 530, 586, 682
BssNAI	GTATAC	1 cut(s)	84
BssT1I	CCWWGG	3 cut(s)	356, 455, 850
Bst1107I	GTATAC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	15, 49, 875
BstAFI	CTTAAG	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	661
BstBAI	YACGTR	1 cut(s)	190
BstDEI	CTNAG	5 cut(s)	90, 198, 656, 842, 903
BstF5I	GGATG	4 cut(s)	100, 451, 465, 736
BstKTI	GATC	6 cut(s)	54, 215, 337, 533, 589, 685
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	6 cut(s)	51, 212, 334, 530, 586, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 644, 707
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	2 cut(s)	701, 803
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	2 cut(s)	31, 555
BstSLI	GKGCMC	2 cut(s)	47, 70
BstV1I	GCAGC	3 cut(s)	421, 637, 659
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BstZ17I	GTATAC	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	5 cut(s)	129, 283, 361, 539, 743
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	4 cut(s)	100, 451, 465, 736
BtsIMutI	CAGTG	1 cut(s)	828
CaiI	CAGNNNCTG	2 cut(s)	230, 305
CciI	TCATGA	1 cut(s)	513
Cfr13I	GGNCC	4 cut(s)	412, 538, 741, 782
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	222, 662
CviAII	CATG	4 cut(s)	514, 698, 800, 812
CviQI	GTAC	2 cut(s)	222, 662
DdeI	CTNAG	5 cut(s)	90, 198, 656, 842, 903
DpnI	GATC	6 cut(s)	53, 214, 336, 532, 588, 684
DpnII	GATC	6 cut(s)	51, 212, 334, 530, 586, 682
DraIII	CACNNNGTG	2 cut(s)	659, 877
EaeI	YGGCCR	1 cut(s)	281
Eco130I	CCWWGG	3 cut(s)	356, 455, 850
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	412, 782
Eco57I	CTGAAG	1 cut(s)	750
Eco81I	CCTNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	3 cut(s)	356, 455, 850
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	3 cut(s)	356, 455, 850
FaeI	CATG	4 cut(s)	517, 701, 803, 815
FalI	AAGNNNNNCTT	4 cut(s)	439, 471, 474, 506
FaqI	GGGAC	1 cut(s)	768
FatI	CATG	4 cut(s)	513, 697, 799, 811
FauNDI	CATATG	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	435, 648, 651
FokI	GGATG	4 cut(s)	107, 438, 472, 743
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	3 cut(s)	435, 648, 651
GluI	GCNGC	3 cut(s)	435, 648, 651
HaeIII	GGCC	5 cut(s)	129, 283, 361, 539, 743
HapII	CCGG	1 cut(s)	886
HgaI	GACGC	1 cut(s)	569
Hin1II	CATG	4 cut(s)	517, 701, 803, 815
HindIII	AAGCTT	2 cut(s)	158, 844
HinfI	GANTC	4 cut(s)	101, 302, 510, 572
HpaII	CCGG	1 cut(s)	886
Hpy166II	GTNNAC	4 cut(s)	45, 68, 84, 662
Hpy188I	TCNGA	5 cut(s)	136, 176, 297, 420, 769
Hpy188III	TCNNGA	7 cut(s)	197, 306, 325, 491, 514, 584, 724
Hpy8I	GTNNAC	4 cut(s)	45, 68, 84, 662
HpyAV	CCTTC	3 cut(s)	372, 376, 721
HpyCH4III	ACNGT	3 cut(s)	15, 49, 875
HpyCH4IV	ACGT	2 cut(s)	189, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 644, 707
HpyF3I	CTNAG	5 cut(s)	90, 198, 656, 842, 903
HpySE526I	ACGT	2 cut(s)	189, 890
Hsp92II	CATG	4 cut(s)	517, 701, 803, 815
Kzo9I	GATC	6 cut(s)	51, 212, 334, 530, 586, 682
Lsp1109I	GCAGC	3 cut(s)	421, 637, 659
LweI	GCATC	1 cut(s)	605
MaeII	ACGT	2 cut(s)	189, 890
MalI	GATC	6 cut(s)	53, 214, 336, 532, 588, 684
MboI	GATC	6 cut(s)	51, 212, 334, 530, 586, 682
MboII	GAAGA	3 cut(s)	529, 633, 767
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	3 cut(s)	47, 70, 295
MluCI	AATT	3 cut(s)	309, 466, 863
MlyI	GAGTC	3 cut(s)	311, 504, 581
MnlI	CCTC	9 cut(s)	91, 193, 220, 426, 456, 498, 628, 667, 796
MseI	TTAA	7 cut(s)	56, 156, 162, 404, 446, 480, 500
MslI	CAYNNNNRTG	2 cut(s)	518, 831
MspA1I	CMGCKG	2 cut(s)	434, 650
MspCI	CTTAAG	1 cut(s)	55
MspI	CCGG	1 cut(s)	886
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	440, 644, 707
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	6 cut(s)	51, 212, 334, 530, 586, 682
NlaIII	CATG	4 cut(s)	517, 701, 803, 815
NlaIV	GGNNCC	3 cut(s)	195, 414, 784
NspI	RCATGY	2 cut(s)	701, 803
PagI	TCATGA	1 cut(s)	513
PciI	ACATGT	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	2 cut(s)	301, 389
PkrI	GCNGC	3 cut(s)	436, 649, 652
PleI	GAGTC	3 cut(s)	310, 504, 580
PpsI	GAGTC	3 cut(s)	310, 504, 580
Ppu21I	YACGTR	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	1 cut(s)	799
PsiI	TTATAA	1 cut(s)	471
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	195, 414, 784
PspPI	GGNCC	4 cut(s)	412, 538, 741, 782
PspPPI	RGGWCCY	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	35
PstNI	CAGNNNCTG	2 cut(s)	230, 305
PsuI	RGATCY	1 cut(s)	212
PsyI	GACNNNGTC	2 cut(s)	301, 389
PvuII	CAGCTG	2 cut(s)	434, 650
RsaI	GTAC	2 cut(s)	223, 663
RsaNI	GTAC	2 cut(s)	222, 662
RseI	CAYNNNNRTG	2 cut(s)	518, 831
SaqAI	TTAA	7 cut(s)	56, 156, 162, 404, 446, 480, 500
SatI	GCNGC	3 cut(s)	435, 648, 651
Sau3AI	GATC	6 cut(s)	51, 212, 334, 530, 586, 682
Sau96I	GGNCC	4 cut(s)	412, 538, 741, 782
SchI	GAGTC	3 cut(s)	311, 504, 581
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	3 cut(s)	47, 70, 295
SfaNI	GCATC	1 cut(s)	605
SfcI	CTRYAG	2 cut(s)	31, 555
SinI	GGWCC	2 cut(s)	412, 782
SmiMI	CAYNNNNRTG	2 cut(s)	518, 831
SmlI	CTYRAG	3 cut(s)	55, 438, 671
SmoI	CTYRAG	3 cut(s)	55, 438, 671
Sse9I	AATT	3 cut(s)	309, 466, 863
SsiI	CCGC	1 cut(s)	320
SspI	AATATT	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	3 cut(s)	356, 455, 850
TaaI	ACNGT	3 cut(s)	15, 49, 875
TaiI	ACGT	2 cut(s)	192, 893
TaqI	TCGA	1 cut(s)	723
TasI	AATT	3 cut(s)	309, 466, 863
TatI	WGTACW	2 cut(s)	221, 661
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	7 cut(s)	56, 156, 162, 404, 446, 480, 500
Tru9I	TTAA	7 cut(s)	56, 156, 162, 404, 446, 480, 500
TscAI	CASTG	1 cut(s)	835
TseI	GCWGC	3 cut(s)	434, 647, 650
TspDTI	ATGAA	5 cut(s)	363, 530, 560, 581, 729
TspRI	CASTG	1 cut(s)	835
Tth111I	GACNNNGTC	2 cut(s)	301, 389
Vha464I	CTTAAG	1 cut(s)	55
VneI	GTGCAC	2 cut(s)	43, 66
VpaK11BI	GGWCC	2 cut(s)	412, 782
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	2 cut(s)	701, 803
XmiI	GTMKAC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.