Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Forward (+)

54939126 .. 54944688

Gene Structure 5563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014576

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGAACCTTGTTCCTGCATTGCCATGTTCATTGGCCAATTTATTTGTGAAGATTCATCATTTACCACTGCACTTTCCTTCACTTGCTGGAAAGGTCCTGATGAATTTAACAGATAGTTGTGGTGGTTACCATCAATTCCCTGAGGCCAAGTCTTTCTCAAGATTCATATCAAAGCAGAAGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGGAGTCTTACTCATTTGAATTTCGTTGATAAAGCTATTAACATTGCTAAAGCTCATGGATTTATGCCTGGTGTGCTTTCGTATAATGCGATCTTAGATGCAGTGATTAGGGCTAAAGGGTCTGTTCTGTTTGCTGAGGATGTTCTTTTACTTCTGAAGGGTGGAAAATACTCAAAAAATGATGCAAAGACTGTTGCATTTCGTCATCTGCAGGGTGTGGTGCACCGTGATCTTAAGCCAGAGGATGAGAGTTCGCCATTGAAAGCCATTGACTTTGGCCTATCAGATTTTGCCAAACCAGATGAGAGGCTTAATGATATTGTCGGAAGTGCATGCTACGTGGCTCCTGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTATGGAGTAGTGTAATTTATGTGTCTGGAATTTTTCGGGCGGTCTTGAAAGCTGATCCCAGTTTTGATGAAGCACCTTGGCCTTCGTTATCTTTTGAAGCGAAGGACTTTGTCAAACGCTTATTAAATAAGGACCCTCGGAAGCGAATGACAACTGCTCAAGCATTAAGTGAGTGTTCCATATCTCTTTTATGTTTTCAGTTTCTGATATATTGCCCTTTAGCACCGTCTAAGACATTGACGTTGGAAGAACTGTTTTATCTGAAGGAGCGGTTTGCACTATTAGTGCCGAATAAGAATGGCACTATCACTCTTGGCAATATTAGAATGGTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTGTAATCAATCTCTTACCAAACGCAATGAAGGAGTCTCGCATTCCTGATCTTATTGCATCACTAAATGCACTTCAATACAGAATAATGGATTTTGAGGATTTCTGTGCAGCTGCACTAAGTGTACATCAGCTTGAGGCACTTGATCGTTGGGAACAACATGCTCAATGTGCATATGAGCTTTTCGAGAAGAATGGAAACAGGGCCATTGTCATTGAAGAACTTGCTTCAGAACTTGGGCTTGGTCCCTCCATTCGATTACATGTGGTTCTCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTTGTAAAATTGTTGCATGGTGTGTCCAGCCGGACGTTTGTGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

444

Amino Acids

49.63

Weight (kDa)

8.64

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	128 - 257	6.4e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	871
AciI	CCGC	3 cut(s)	199, 641, 871
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	3 cut(s)	103, 235, 630
AcuI	CTGAAG	3 cut(s)	392, 884, 1176
AdeI	CACNNNGTG	1 cut(s)	1085
AfaI	GTAC	2 cut(s)	589, 1089
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	1225
AgsI	TTSAA	6 cut(s)	235, 478, 649, 698, 1040, 1181
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	1188, 1220
AluBI	AGCT	8 cut(s)	194, 251, 269, 653, 1076, 1096, 1144, 1272
AluI	AGCT	8 cut(s)	194, 251, 269, 653, 1076, 1096, 1144, 1272
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	1005
Alw44I	GTGCAC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	2 cut(s)	596, 805
AoxI	GGCC	5 cut(s)	33, 144, 493, 680, 1167
ApaLI	GTGCAC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	1073, 1076
ApoI	RAATTY	3 cut(s)	103, 235, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspS9I	GGNCC	5 cut(s)	94, 733, 931, 1167, 1208
AvaII	GGWCC	4 cut(s)	94, 733, 931, 1208
AxyI	CCTNAGG	2 cut(s)	141, 564
BaeGI	GKGCMC	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	1063, 1085
BccI	CCATC	3 cut(s)	138, 942, 1253
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	1005
BfmI	CTRYAG	1 cut(s)	425
BfrI	CTTAAG	1 cut(s)	449
BglII	AGATCT	1 cut(s)	578
BisI	GCNGC	2 cut(s)	1074, 1077
BlsI	GCNGC	2 cut(s)	1075, 1078
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	4 cut(s)	94, 733, 931, 1208
BmgT120I	GGNCC	5 cut(s)	94, 733, 931, 1167, 1208
BmiI	GGNNCC	3 cut(s)	561, 735, 1210
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	3 cut(s)	304, 388, 1031
BmuI	ACTGGG	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	3 cut(s)	142, 744, 1118
BsaAI	YACGTR	1 cut(s)	556
BsaBI	GATNNNNATC	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	677, 737, 1276
Bse1I	ACTGG	2 cut(s)	660, 1247
Bse21I	CCTNAGG	2 cut(s)	141, 564
Bse3DI	GCAATG	3 cut(s)	17, 258, 996
Bse8I	GATNNNNATC	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	677, 737, 1276
BseGI	GGATG	2 cut(s)	361, 466
BseJI	GATNNNNATC	1 cut(s)	166
BseMI	GCAATG	3 cut(s)	17, 258, 996
BseMII	CTCAG	3 cut(s)	132, 342, 555
BseNI	ACTGG	2 cut(s)	660, 1247
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	1063, 1085
BsgI	GTGCAG	3 cut(s)	53, 1062, 1092
BshFI	GGCC	5 cut(s)	35, 146, 495, 682, 1169
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	1312
BslFI	GGGAC	1 cut(s)	1194
BsmAI	GTCTC	1 cut(s)	1005
BsmFI	GGGAC	1 cut(s)	1194
BsmI	GAATGC	1 cut(s)	1005
BsnI	GGCC	5 cut(s)	35, 146, 495, 682, 1169
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp1407I	TGTACA	1 cut(s)	1087
Bsp143I	GATC	6 cut(s)	306, 445, 578, 655, 1012, 1108
BspACI	CCGC	3 cut(s)	199, 641, 871
BspANI	GGCC	5 cut(s)	35, 146, 495, 682, 1169
BspCNI	CTCAG	3 cut(s)	133, 343, 556
BspLI	GGNNCC	3 cut(s)	561, 735, 1210
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	1 cut(s)	650
BspTI	CTTAAG	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	871
BsrDI	GCAATG	3 cut(s)	17, 258, 996
BsrGI	TGTACA	1 cut(s)	1087
BsrI	ACTGG	2 cut(s)	660, 1247
BssECI	CCNNGG	3 cut(s)	677, 737, 1276
BssMI	GATC	6 cut(s)	306, 445, 578, 655, 1012, 1108
BssT1I	CCWWGG	2 cut(s)	677, 1276
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	4 cut(s)	409, 443, 828, 855
BstAFI	CTTAAG	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	1087
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	8 cut(s)	141, 310, 351, 564, 831, 1082, 1268, 1329
BstEII	GGTNACC	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	361, 466
BstKTI	GATC	6 cut(s)	309, 448, 581, 658, 1015, 1111
BstMAI	GTCTC	1 cut(s)	1005
BstMBI	GATC	6 cut(s)	306, 445, 578, 655, 1012, 1108
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 289, 1133
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	3 cut(s)	552, 1127, 1229
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	425
BstSLI	GKGCMC	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	1063, 1085
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
Bsu36I	CCTNAGG	2 cut(s)	141, 564
BsuRI	GGCC	5 cut(s)	35, 146, 495, 682, 1169
BtsCI	GGATG	2 cut(s)	361, 466
BtsI	GCAGTG	2 cut(s)	65, 324
BtsIMutI	CAGTG	3 cut(s)	65, 324, 1254
Cac8I	GCNNGC	1 cut(s)	550
CaiI	CAGNNNCTG	2 cut(s)	596, 805
Cfr13I	GGNCC	5 cut(s)	94, 733, 931, 1167, 1208
Csp6I	GTAC	2 cut(s)	588, 1088
CviAII	CATG	7 cut(s)	24, 272, 549, 1124, 1226, 1238, 1298
CviQI	GTAC	2 cut(s)	588, 1088
DdeI	CTNAG	8 cut(s)	141, 310, 351, 564, 831, 1082, 1268, 1329
DpnI	GATC	6 cut(s)	308, 447, 580, 657, 1014, 1110
DpnII	GATC	6 cut(s)	306, 445, 578, 655, 1012, 1108
DraIII	CACNNNGTG	1 cut(s)	1085
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	677, 1276
Eco47I	GGWCC	4 cut(s)	94, 733, 931, 1208
Eco57I	CTGAAG	3 cut(s)	392, 884, 1176
Eco81I	CCTNAGG	2 cut(s)	141, 564
Eco91I	GGTNACC	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	94, 733
EcoO65I	GGTNACC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	677, 1276
ErhI	CCWWGG	2 cut(s)	677, 1276
FaeI	CATG	7 cut(s)	27, 275, 552, 1127, 1229, 1241, 1301
FaqI	GGGAC	1 cut(s)	1194
FatI	CATG	7 cut(s)	23, 271, 548, 1123, 1225, 1237, 1297
FauNDI	CATATG	1 cut(s)	1138
Fnu4HI	GCNGC	2 cut(s)	1074, 1077
FokI	GGATG	2 cut(s)	368, 473
Fsp4HI	GCNGC	2 cut(s)	1074, 1077
GluI	GCNGC	2 cut(s)	1074, 1077
HaeIII	GGCC	5 cut(s)	35, 146, 495, 682, 1169
HapII	CCGG	1 cut(s)	1312
Hin1II	CATG	7 cut(s)	27, 275, 552, 1127, 1229, 1241, 1301
HindIII	AAGCTT	1 cut(s)	1270
HinfI	GANTC	4 cut(s)	52, 162, 220, 998
HpaII	CCGG	1 cut(s)	1312
Hpy166II	GTNNAC	2 cut(s)	439, 1088
Hpy188I	TCNGA	7 cut(s)	372, 502, 542, 741, 807, 864, 1195
Hpy188III	TCNNGA	7 cut(s)	97, 159, 563, 627, 646, 1010, 1150
Hpy8I	GTNNAC	2 cut(s)	439, 1088
HpyAV	CCTTC	7 cut(s)	87, 367, 693, 697, 859, 988, 1318
HpyCH4III	ACNGT	4 cut(s)	409, 443, 828, 855
HpyCH4IV	ACGT	3 cut(s)	555, 842, 1316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 289, 1133
HpyF3I	CTNAG	8 cut(s)	141, 310, 351, 564, 831, 1082, 1268, 1329
HpySE526I	ACGT	3 cut(s)	555, 842, 1316
Hsp92II	CATG	7 cut(s)	27, 275, 552, 1127, 1229, 1241, 1301
Kzo9I	GATC	6 cut(s)	306, 445, 578, 655, 1012, 1108
LmnI	GCTCC	2 cut(s)	565, 868
Lsp1109I	GCAGC	2 cut(s)	1063, 1085
LweI	GCATC	3 cut(s)	304, 388, 1031
MaeII	ACGT	3 cut(s)	555, 842, 1316
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	6 cut(s)	308, 447, 580, 657, 1014, 1110
MbiI	CCGCTC	1 cut(s)	871
MboI	GATC	6 cut(s)	306, 445, 578, 655, 1012, 1108
MboII	GAAGA	4 cut(s)	61, 860, 1165, 1193
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	441
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	8 cut(s)	37, 103, 134, 186, 235, 615, 630, 1289
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	229, 1007
MmeI	TCCRAC	2 cut(s)	520, 825
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	6 cut(s)	107, 255, 450, 528, 725, 767
MslI	CAYNNNNRTG	2 cut(s)	22, 1257
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	1076
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	1 cut(s)	1312
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	1005
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	191, 289, 1133
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	6 cut(s)	306, 445, 578, 655, 1012, 1108
NlaIII	CATG	7 cut(s)	27, 275, 552, 1127, 1229, 1241, 1301
NlaIV	GGNNCC	3 cut(s)	561, 735, 1210
NmeAIII	GCCGAG	1 cut(s)	175
NspI	RCATGY	3 cut(s)	552, 1127, 1229
PaeI	GCATGC	1 cut(s)	552
PciI	ACATGT	1 cut(s)	1225
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PctI	GAATGC	1 cut(s)	1005
PfeI	GAWTC	2 cut(s)	52, 162
PflFI	GACNNNGTC	1 cut(s)	710
PkrI	GCNGC	2 cut(s)	1075, 1078
PleI	GAGTC	2 cut(s)	228, 1006
PpsI	GAGTC	2 cut(s)	228, 1006
Ppu21I	YACGTR	1 cut(s)	556
PpuMI	RGGWCCY	2 cut(s)	94, 733
PscI	ACATGT	1 cut(s)	1225
Psp5II	RGGWCCY	2 cut(s)	94, 733
Psp6I	CCWGG	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	561, 735, 1210
PspPI	GGNCC	5 cut(s)	94, 733, 931, 1167, 1208
PspPPI	RGGWCCY	2 cut(s)	94, 733
PstI	CTGCAG	1 cut(s)	429
PstNI	CAGNNNCTG	2 cut(s)	596, 805
PsuI	RGATCY	1 cut(s)	578
PsyI	GACNNNGTC	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	1076
RsaI	GTAC	2 cut(s)	589, 1089
RsaNI	GTAC	2 cut(s)	588, 1088
RseI	CAYNNNNRTG	2 cut(s)	22, 1257
SaqAI	TTAA	6 cut(s)	107, 255, 450, 528, 725, 767
SatI	GCNGC	2 cut(s)	1074, 1077
Sau3AI	GATC	6 cut(s)	306, 445, 578, 655, 1012, 1108
Sau96I	GGNCC	5 cut(s)	94, 733, 931, 1167, 1208
SchI	GAGTC	2 cut(s)	229, 1007
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	441
SfaNI	GCATC	3 cut(s)	304, 388, 1031
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	4 cut(s)	94, 733, 931, 1208
SmiMI	CAYNNNNRTG	2 cut(s)	22, 1257
SmlI	CTYRAG	4 cut(s)	157, 449, 759, 1097
SmoI	CTYRAG	4 cut(s)	157, 449, 759, 1097
SphI	GCATGC	1 cut(s)	552
Sse9I	AATT	8 cut(s)	37, 103, 134, 186, 235, 615, 630, 1289
SsiI	CCGC	3 cut(s)	199, 641, 871
SspI	AATATT	1 cut(s)	922
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	677, 1276
TaaI	ACNGT	4 cut(s)	409, 443, 828, 855
TaiI	ACGT	3 cut(s)	558, 845, 1319
TaqI	TCGA	3 cut(s)	206, 1149, 1219
TasI	AATT	8 cut(s)	37, 103, 134, 186, 235, 615, 630, 1289
TatI	WGTACW	2 cut(s)	587, 1087
TfiI	GAWTC	2 cut(s)	52, 162
Tru1I	TTAA	6 cut(s)	107, 255, 450, 528, 725, 767
Tru9I	TTAA	6 cut(s)	107, 255, 450, 528, 725, 767
TscAI	CASTG	3 cut(s)	72, 324, 1261
TseI	GCWGC	2 cut(s)	1073, 1076
TspDTI	ATGAA	7 cut(s)	17, 18, 44, 116, 154, 684, 1007
TspRI	CASTG	3 cut(s)	72, 324, 1261
Tth111I	GACNNNGTC	1 cut(s)	710
Vha464I	CTTAAG	1 cut(s)	449
VneI	GTGCAC	1 cut(s)	437
VpaK11BI	GGWCC	4 cut(s)	94, 733, 931, 1208
XapI	RAATTY	3 cut(s)	103, 235, 630
XceI	RCATGY	3 cut(s)	552, 1127, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.