Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005290.1

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Forward (+)

6405 .. 10229

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005290.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgtgcagtatgtatagtgatggaattggagtggtccaagagagagcgatgcataggctgatgggattcaaaaccaggaaaccggaatttggcatgagctctaaccacttcttcacttgcagtgtagaaagtgggttgaagaggttgtctagagtaatttcagaagttcccagtagtataggagactttgatatgggcagtattgaagaggaatgtgacataagttcgaatagaagctctccggtagctattaacattgctaaagctcatggatttatgccgggtgtgctttcgtataatgcgattttagatgcagtgattaggggtggaaaatactcaaaagatgatgcaaagactgttgcattttgtcatcttcagggtgtggtgcaccgtgatcttaagccagagaaagttctgaatattgctaaggatgagagttcgccattgaaagccattgactttggcctatcagattttgccaaaccagatgagaggcttaatgatattgtcggaagtgcatactacgtggctcctgaggttctacatagatcttttagtagagaggctgatgtatggagtacaggtgccctaatgaaaaatgctacagacgcaatgaaggagtcttgcattcctgatcttattgcatcgctaaatgcacttcaatacagaagaatggattttgaggagttctgtgcagctgcactaagtgtacatcagcttgaggcacttgatcgttgggaacaacatgctcaatgtgcatatgaacttttcgagaaggatggaaacagggccattgtcatcgaacaacttgcttcagaacttgggcttggtccctccattccattacatgtggttatccatgactggattaggcacactgatgggaaactaagcttccttggatttgtaaaattgttgcacggtgtgtccagccggacgtttgtgaaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

317

Amino Acids

35.12

Weight (kDa)

5.95

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	584
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	2 cut(s)	359, 798
AdeI	CACNNNGTG	2 cut(s)	707, 925
AfaI	GTAC	2 cut(s)	580, 711
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflII	CTTAAG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	5 cut(s)	70, 139, 206, 448, 662
AjnI	CCWGG	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	810, 842
AluBI	AGCT	7 cut(s)	99, 237, 248, 266, 698, 718, 894
AluI	AGCT	7 cut(s)	99, 237, 248, 266, 698, 718, 894
Alw21I	GWGCWC	2 cut(s)	101, 390
Alw26I	GTCTC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	463, 789
ApaLI	GTGCAC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	695, 698
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	34, 789, 830
AsuC2I	CCSGG	1 cut(s)	282
AsuII	TTCGAA	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	34, 830
AxyI	CCTNAGG	1 cut(s)	534
BaeGI	GKGCMC	2 cut(s)	390, 589
BanI	GGYRCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	101, 390
BbvI	GCAGC	2 cut(s)	685, 707
BccI	CCATC	4 cut(s)	14, 55, 773, 875
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	603
BfrI	CTTAAG	1 cut(s)	398
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	2 cut(s)	696, 699
BlsI	GCNGC	2 cut(s)	697, 700
Bme1390I	CCNGG	2 cut(s)	76, 282
Bme18I	GGWCC	2 cut(s)	34, 830
BmgT120I	GGNCC	3 cut(s)	34, 789, 830
BmiI	GGNNCC	3 cut(s)	531, 586, 832
BmrFI	CCNGG	2 cut(s)	76, 282
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	4 cut(s)	39, 301, 337, 653
BmuI	ACTGGG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	898
BsaWI	WCCGGW	2 cut(s)	82, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	171, 869
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	2 cut(s)	255, 618
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	898
BseGI	GGATG	2 cut(s)	436, 784
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	2 cut(s)	255, 618
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	171, 869
BseRI	GAGGAG	1 cut(s)	698
BseSI	GKGCMC	2 cut(s)	390, 589
BseXI	GCAGC	2 cut(s)	685, 707
BsgI	GTGCAG	3 cut(s)	25, 684, 714
BshFI	GGCC	2 cut(s)	465, 791
BshNI	GGYRCC	1 cut(s)	584
BsiHKAI	GWGCWC	2 cut(s)	101, 390
BsiSI	CCGG	4 cut(s)	83, 242, 281, 934
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	816
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	465, 791
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	3 cut(s)	101, 390, 589
Bsp1407I	TGTACA	1 cut(s)	709
Bsp143I	GATC	4 cut(s)	394, 548, 634, 730
BspANI	GGCC	2 cut(s)	465, 791
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	531, 586, 832
BspT104I	TTCGAA	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	2 cut(s)	255, 618
BsrGI	TGTACA	1 cut(s)	709
BsrI	ACTGG	2 cut(s)	171, 869
BssECI	CCNNGG	1 cut(s)	898
BssMI	GATC	4 cut(s)	394, 548, 634, 730
BssT1I	CCWWGG	1 cut(s)	898
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	3 cut(s)	358, 392, 923
Bst6I	CTCTTC	2 cut(s)	134, 201
BstAFI	CTTAAG	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	709
BstBAI	YACGTR	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	227
BstDEI	CTNAG	5 cut(s)	426, 534, 704, 890, 951
BstF5I	GGATG	2 cut(s)	436, 784
BstKTI	GATC	4 cut(s)	397, 551, 637, 733
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	4 cut(s)	394, 548, 634, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 608, 755
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	2 cut(s)	749, 851
BstSCI	CCNGG	2 cut(s)	74, 280
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	2 cut(s)	390, 589
BstV1I	GCAGC	2 cut(s)	685, 707
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	465, 791
BtgZI	GCGATG	2 cut(s)	62, 630
BtsCI	GGATG	2 cut(s)	436, 784
BtsI	GCAGTG	2 cut(s)	127, 321
BtsIMutI	CAGTG	3 cut(s)	127, 321, 876
Cfr13I	GGNCC	3 cut(s)	34, 789, 830
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	2 cut(s)	579, 710
CviAII	CATG	5 cut(s)	94, 269, 746, 848, 860
CviQI	GTAC	2 cut(s)	579, 710
DdeI	CTNAG	5 cut(s)	426, 534, 704, 890, 951
DpnI	GATC	4 cut(s)	396, 550, 636, 732
DpnII	GATC	4 cut(s)	394, 548, 634, 730
DraIII	CACNNNGTG	2 cut(s)	707, 925
Eam1104I	CTCTTC	2 cut(s)	134, 201
EarI	CTCTTC	2 cut(s)	134, 201
Ecl136II	GAGCTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	898
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	34, 830
Eco53kI	GAGCTC	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	359, 798
Eco81I	CCTNAGG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	898
EcoT22I	ATGCAT	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	898
FaeI	CATG	5 cut(s)	97, 272, 749, 851, 863
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	5 cut(s)	93, 268, 745, 847, 859
FauNDI	CATATG	1 cut(s)	760
Fnu4HI	GCNGC	2 cut(s)	696, 699
FokI	GGATG	2 cut(s)	443, 791
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	696, 699
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	696, 699
HaeIII	GGCC	2 cut(s)	465, 791
HapII	CCGG	4 cut(s)	83, 242, 281, 934
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	5 cut(s)	97, 272, 749, 851, 863
HindIII	AAGCTT	1 cut(s)	892
HinfI	GANTC	2 cut(s)	66, 620
HpaII	CCGG	4 cut(s)	83, 242, 281, 934
Hpy166II	GTNNAC	2 cut(s)	388, 710
Hpy188I	TCNGA	5 cut(s)	163, 417, 472, 512, 817
Hpy188III	TCNNGA	4 cut(s)	150, 533, 632, 772
Hpy8I	GTNNAC	2 cut(s)	388, 710
HpyAV	CCTTC	3 cut(s)	610, 769, 940
HpyCH4III	ACNGT	3 cut(s)	358, 392, 923
HpyCH4IV	ACGT	2 cut(s)	525, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 608, 755
HpyF3I	CTNAG	5 cut(s)	426, 534, 704, 890, 951
HpySE526I	ACGT	2 cut(s)	525, 938
Hsp92II	CATG	5 cut(s)	97, 272, 749, 851, 863
Kzo9I	GATC	4 cut(s)	394, 548, 634, 730
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	685, 707
LweI	GCATC	4 cut(s)	39, 301, 337, 653
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	525, 938
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	4 cut(s)	396, 550, 636, 732
MboI	GATC	4 cut(s)	394, 548, 634, 730
MboII	GAAGA	5 cut(s)	103, 151, 218, 365, 681
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	101, 390, 589
MluCI	AATT	4 cut(s)	24, 86, 156, 911
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	8 cut(s)	135, 202, 486, 529, 556, 676, 715, 844
Mph1103I	ATGCAT	1 cut(s)	54
MseI	TTAA	3 cut(s)	252, 399, 498
MslI	CAYNNNNRTG	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	698
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	4 cut(s)	83, 242, 281, 934
MspR9I	CCNGG	2 cut(s)	76, 282
Mva1269I	GAATGC	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	286, 608, 755
NciI	CCSGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	4 cut(s)	394, 548, 634, 730
NlaIII	CATG	5 cut(s)	97, 272, 749, 851, 863
NlaIV	GGNNCC	3 cut(s)	531, 586, 832
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	2 cut(s)	749, 851
NspV	TTCGAA	1 cut(s)	227
PciI	ACATGT	1 cut(s)	847
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	697, 700
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
Ppu21I	YACGTR	1 cut(s)	526
PscI	ACATGT	1 cut(s)	847
Psp124BI	GAGCTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	531, 586, 832
PspPI	GGNCC	3 cut(s)	34, 789, 830
PsuI	RGATCY	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	2 cut(s)	580, 711
RsaNI	GTAC	2 cut(s)	579, 710
RseI	CAYNNNNRTG	1 cut(s)	879
SacI	GAGCTC	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	252, 399, 498
SatI	GCNGC	2 cut(s)	696, 699
Sau3AI	GATC	4 cut(s)	394, 548, 634, 730
Sau96I	GGNCC	3 cut(s)	34, 789, 830
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	2 cut(s)	76, 282
SduI	GDGCHC	3 cut(s)	101, 390, 589
SfaNI	GCATC	4 cut(s)	39, 301, 337, 653
SfcI	CTRYAG	1 cut(s)	603
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	2 cut(s)	34, 830
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	2 cut(s)	398, 719
SmoI	CTYRAG	2 cut(s)	398, 719
Sse9I	AATT	4 cut(s)	24, 86, 156, 911
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	74, 280
StyI	CCWWGG	1 cut(s)	898
TaaI	ACNGT	3 cut(s)	358, 392, 923
TaiI	ACGT	2 cut(s)	528, 941
TaqI	TCGA	3 cut(s)	227, 771, 801
TasI	AATT	4 cut(s)	24, 86, 156, 911
TatI	WGTACW	2 cut(s)	578, 709
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	252, 399, 498
Tru9I	TTAA	3 cut(s)	252, 399, 498
TscAI	CASTG	3 cut(s)	127, 321, 883
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	695, 698
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	608, 629, 777
TspRI	CASTG	3 cut(s)	127, 321, 883
Vha464I	CTTAAG	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	34, 830
XapI	RAATTY	1 cut(s)	86
XbaI	TCTAGA	1 cut(s)	149
XceI	RCATGY	2 cut(s)	749, 851
XspI	CTAG	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.