Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003975

Physical Location & Seq

Genomic Coordinates Reverse (-)

9920433 .. 9923377

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGAACCTGCACCTCAAAACCACCAAAGCCAAACCCCTACGCCTCCAGAGACCCAAATGACCCATCTGACCCTTCCCAAACCCCCAAATCCATAACCCCCCACCACAATTCCAAAGACGACGCCGTTTCCGGCGCCAGACAGTCACAGTCCCAGTCGCCGTTCTTCCCCTTCTACAGCCCCAGCCCGGCCCATTACCTCAAGAAGTCTCCGGCGACGACCCGGAGCAAGAGCGCTGCCTCCACGCCCAGCCGGTTTTTCCGGCGACCCTTCCCGCCGCCGTCGCCGGCGAAGCACATTAAGGCCGTGCTGGCGCGGCGGCTGGGGAAAAAGGCGACGGCTTCGGTGGCGATACCGGAGGACGGTGAAGATGAGGATGGGGTTGATCTGGACAAGAGGTTTGGGTTCTCCAAGGAGTTAACTACTAGATTGGAGGTTGGGGATGAAGTGGGCCGAGGGCATTTTGGGTATACTTGCTCTGCTGTGTTCAAAAAGGGTGAGTTTAAGGGCCAGCAGGTAGCTGTTAAAGTCATCCCTAAAGCAAAGATGACAACTGCTATTGCAATTGAGGATGTGAGAAGGGAGGTCAAAATATTACGTGCCTTGACCGGACATACAAATCTAGTTCAGTTCTATGATGCATTTGAAGACAGTGATAATGTCTACATAGTAATGGAGTTGTGTGAAGGTGGGGAGCTTTTGGATAGAATACTTTCAAGGGGTGGAAAATACTCAGAGGATGATGCAAAGACTGTCATGGTTCAAATACTGAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGTGATCTTAAGCCAGAGCAGGACTATTATTCTTCTAGTAGATTGAGTGCGTTTAAACACCAGCAATCATCAGAGTCGACTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004713 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018108 GO:0018193 GO:0018209 GO:0018212 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

298

Amino Acids

32.92

Weight (kDa)

9.0

Isoelectric Point (pI)

64.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	145 - 276	1.1e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	145 - 273	5.6e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49580 AT3G19100
fragaria_vesca	FvH4_2g06730
malus_domestica	MD05G1075300.v1.1 MD10G1089900.v1.1
prunus_persica	Prupe.8G117200_v2.0.a1 Prupe.8G117200_v2.0.a1
pyrus_communis	pycom10g07340
rosa_chinensis	RchiOBHm_Chr6g0258891 RchiOBHm_Chr6g0258921
rosa_laevigata	RLG00000002771 RLG00000014571 RLG00000014574 RLG00000014576
rosa_multiflora	Rmu_co8233831.1_g000001 Rmu_sc0004347.1_g000001 Rmu_sc0004485.1_g000023 Rmu_sc0005290.1_g000002 Rmu_sc0009697.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206150 Rroxscaffold_7G00206340
rosa_rugosa	Rorug05G0584400
rosa_samantha	Rh6AG100600 Rh6AG100700 Rh6BG091900 Rh6BG092300 Rh6BG092600 Rh6BG092700 Rh6CG089800 Rh6CG089900 Rh6DG084000 Rh6DG084100
rosa_wichuraiana	Rw6G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	17, 505
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	3 cut(s)	470, 663, 887
AccII	CGCG	1 cut(s)	316
AciI	CCGC	4 cut(s)	275, 278, 316, 319
AcuI	CTGAAG	1 cut(s)	779
AcyI	GRCGYC	2 cut(s)	123, 135
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	187, 362
AflII	CTTAAG	1 cut(s)	818
AgsI	TTSAA	4 cut(s)	490, 647, 717, 764
AluBI	AGCT	2 cut(s)	521, 697
AluI	AGCT	2 cut(s)	521, 697
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	2 cut(s)	45, 213
Alw44I	GTGCAC	1 cut(s)	806
Aor51HI	AGCGCT	1 cut(s)	235
AoxI	GGCC	4 cut(s)	189, 303, 451, 508
ApaLI	GTGCAC	1 cut(s)	806
ApeKI	GCWGC	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
Asp700I	GAANNNNTTC	1 cut(s)	712
AspLEI	GCGC	3 cut(s)	137, 236, 316
AspS9I	GGNCC	3 cut(s)	190, 451, 508
AsuC2I	CCSGG	2 cut(s)	188, 223
AsuHPI	GGTGA	2 cut(s)	377, 509
BaeGI	GKGCMC	1 cut(s)	810
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	810
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	73, 371
BceAI	ACGGC	5 cut(s)	110, 145, 265, 290, 354
BcnI	CCSGG	2 cut(s)	188, 223
BcoDI	GTCTC	2 cut(s)	45, 213
BfaI	CTAG	3 cut(s)	426, 623, 846
BfmI	CTRYAG	1 cut(s)	175
BfoI	RGCGCY	2 cut(s)	138, 237
BfrI	CTTAAG	1 cut(s)	818
BfuAI	ACCTGC	2 cut(s)	17, 505
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	4 cut(s)	237, 278, 317, 320
BlsI	GCNGC	4 cut(s)	238, 279, 318, 321
Bme1390I	CCNGG	2 cut(s)	188, 223
BmgT120I	GGNCC	3 cut(s)	190, 451, 508
BmiI	GGNNCC	2 cut(s)	7, 136
BmrFI	CCNGG	2 cut(s)	188, 223
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	628, 733
BmuI	ACTGGG	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	654
BpmI	CTGGAG	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	2 cut(s)	188, 223
BsaAI	YACGTR	1 cut(s)	599
BsaHI	GRCGYC	2 cut(s)	123, 135
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	411, 454
BsaWI	WCCGGW	2 cut(s)	355, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 362
Bse118I	RCCGGY	2 cut(s)	252, 286
Bse1I	ACTGG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	411, 454
BseGI	GGATG	5 cut(s)	382, 448, 531, 577, 745
BseLI	CCNNNNNNNGG	2 cut(s)	187, 362
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	810
BseXI	GCAGC	1 cut(s)	223
BseYI	CCCAGC	3 cut(s)	182, 248, 322
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	4 cut(s)	191, 305, 453, 510
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	810
BsiSI	CCGG	9 cut(s)	132, 188, 212, 223, 253, 262, 287, 356, 609
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	187, 362
BsmAI	GTCTC	2 cut(s)	45, 213
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	191, 305, 453, 510
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp143I	GATC	2 cut(s)	385, 814
BspACI	CCGC	4 cut(s)	275, 278, 316, 319
BspANI	GGCC	4 cut(s)	191, 305, 453, 510
BspCNI	CTCAG	1 cut(s)	746
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	7, 136
BspMI	ACCTGC	2 cut(s)	17, 505
BspT107I	GGYRCC	1 cut(s)	134
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	45
BsrFI	RCCGGY	2 cut(s)	252, 286
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	2 cut(s)	252, 286
BssECI	CCNNGG	2 cut(s)	411, 454
BssMI	GATC	2 cut(s)	385, 814
BssNAI	GTATAC	1 cut(s)	471
BssNI	GRCGYC	2 cut(s)	123, 135
BssT1I	CCWWGG	1 cut(s)	411
Bst1107I	GTATAC	1 cut(s)	471
Bst4CI	ACNGT	6 cut(s)	144, 150, 365, 653, 754, 812
BstACI	GRCGYC	2 cut(s)	123, 135
BstAFI	CTTAAG	1 cut(s)	818
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	288, 312, 512
BstDEI	CTNAG	2 cut(s)	733, 891
BstF5I	GGATG	5 cut(s)	382, 448, 531, 577, 745
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	2 cut(s)	138, 237
BstHHI	GCGC	3 cut(s)	137, 236, 316
BstKTI	GATC	2 cut(s)	388, 817
BstMAI	GTCTC	2 cut(s)	45, 213
BstMBI	GATC	2 cut(s)	385, 814
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 292, 311, 316, 347
BstSCI	CCNGG	2 cut(s)	186, 221
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	810
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	654
BstZ17I	GTATAC	1 cut(s)	471
BsuRI	GGCC	4 cut(s)	191, 305, 453, 510
BtsCI	GGATG	5 cut(s)	382, 448, 531, 577, 745
BtsIMutI	CAGTG	1 cut(s)	658
BveI	ACCTGC	2 cut(s)	17, 505
Cac8I	GCNNGC	3 cut(s)	288, 312, 512
CfoI	GCGC	3 cut(s)	137, 236, 316
Cfr10I	RCCGGY	2 cut(s)	252, 286
Cfr13I	GGNCC	3 cut(s)	190, 451, 508
CseI	GACGC	1 cut(s)	131
CviAII	CATG	1 cut(s)	757
DdeI	CTNAG	2 cut(s)	733, 891
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	2 cut(s)	387, 816
DpnII	GATC	2 cut(s)	385, 814
DraI	TTTAAA	1 cut(s)	865
Eco130I	CCWWGG	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	45
Eco47III	AGCGCT	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	779
EcoT14I	CCWWGG	1 cut(s)	411
EcoT22I	ATGCAT	1 cut(s)	643
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	760
FaiI	YATR	6 cut(s)	95, 471, 615, 636, 668, 758
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	756
FauI	CCCGC	1 cut(s)	282
FblI	GTMKAC	3 cut(s)	470, 663, 887
Fnu4HI	GCNGC	4 cut(s)	237, 278, 317, 320
FokI	GGATG	5 cut(s)	389, 455, 518, 584, 752
Fsp4HI	GCNGC	4 cut(s)	237, 278, 317, 320
FspBI	CTAG	3 cut(s)	426, 623, 846
GlaI	GCGC	3 cut(s)	136, 235, 315
GluI	GCNGC	4 cut(s)	237, 278, 317, 320
GsaI	CCCAGC	3 cut(s)	186, 252, 326
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	2 cut(s)	138, 237
HaeIII	GGCC	4 cut(s)	191, 305, 453, 510
HapII	CCGG	9 cut(s)	132, 188, 212, 223, 253, 262, 287, 356, 609
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	3 cut(s)	137, 236, 316
Hin1I	GRCGYC	2 cut(s)	123, 135
Hin1II	CATG	1 cut(s)	760
Hin6I	GCGC	3 cut(s)	135, 234, 314
HinP1I	GCGC	3 cut(s)	135, 234, 314
HincII	GTYRAC	2 cut(s)	420, 888
HindII	GTYRAC	2 cut(s)	420, 888
HinfI	GANTC	2 cut(s)	884, 889
HpaI	GTTAAC	1 cut(s)	420
HpaII	CCGG	9 cut(s)	132, 188, 212, 223, 253, 262, 287, 356, 609
HphI	GGTGA	2 cut(s)	377, 509
Hpy166II	GTNNAC	5 cut(s)	420, 471, 664, 808, 888
Hpy188I	TCNGA	3 cut(s)	70, 736, 883
Hpy188III	TCNNGA	3 cut(s)	48, 202, 389
Hpy8I	GTNNAC	5 cut(s)	420, 471, 664, 808, 888
Hpy99I	CGWCG	4 cut(s)	125, 220, 286, 340
HpyAV	CCTTC	5 cut(s)	84, 181, 280, 573, 680
HpyCH4III	ACNGT	6 cut(s)	144, 150, 365, 653, 754, 812
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	6 cut(s)	12, 563, 641, 746, 782, 808
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 292, 311, 316, 347
HpyF3I	CTNAG	2 cut(s)	733, 891
HpySE526I	ACGT	1 cut(s)	598
Hsp92I	GRCGYC	2 cut(s)	123, 135
Hsp92II	CATG	1 cut(s)	760
HspAI	GCGC	3 cut(s)	135, 234, 314
KasI	GGCGCC	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
KspAI	GTTAAC	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	385, 814
LmnI	GCTCC	2 cut(s)	225, 694
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	628, 733
MaeI	CTAG	3 cut(s)	426, 623, 846
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	2 cut(s)	387, 816
MboI	GATC	2 cut(s)	385, 814
MboII	GAAGA	5 cut(s)	157, 380, 659, 785, 834
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	2 cut(s)	109, 564
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	883, 893
Mph1103I	ATGCAT	1 cut(s)	643
MreI	CGCCGGCG	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	712
MseI	TTAA	6 cut(s)	300, 419, 504, 525, 819, 864
MslI	CAYNNNNRTG	1 cut(s)	671
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	9 cut(s)	132, 188, 212, 223, 253, 262, 287, 356, 609
MspR9I	CCNGG	2 cut(s)	188, 223
MssI	GTTTAAAC	1 cut(s)	865
MunI	CAATTG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	5 cut(s)	283, 292, 311, 316, 347
NaeI	GCCGGC	1 cut(s)	288
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	2 cut(s)	188, 223
NdeII	GATC	2 cut(s)	385, 814
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	760
NlaIV	GGNNCC	2 cut(s)	7, 136
NmeAIII	GCCGAG	1 cut(s)	479
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	643
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	712
PkrI	GCNGC	4 cut(s)	238, 279, 318, 321
PleI	GAGTC	2 cut(s)	883, 892
PluTI	GGCGCC	1 cut(s)	138
PmeI	GTTTAAAC	1 cut(s)	865
PpsI	GAGTC	2 cut(s)	883, 892
Ppu21I	YACGTR	1 cut(s)	599
PspFI	CCCAGC	3 cut(s)	182, 248, 322
PspN4I	GGNNCC	2 cut(s)	7, 136
PspPI	GGNCC	3 cut(s)	190, 451, 508
RseI	CAYNNNNRTG	1 cut(s)	671
SalI	GTCGAC	1 cut(s)	886
SaqAI	TTAA	6 cut(s)	300, 419, 504, 525, 819, 864
SatI	GCNGC	4 cut(s)	237, 278, 317, 320
Sau3AI	GATC	2 cut(s)	385, 814
Sau96I	GGNCC	3 cut(s)	190, 451, 508
SchI	GAGTC	2 cut(s)	883, 893
ScrFI	CCNGG	2 cut(s)	188, 223
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	2 cut(s)	628, 733
SfcI	CTRYAG	1 cut(s)	175
SfoI	GGCGCC	1 cut(s)	136
SgrAI	CRCCGGYG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	200, 818
SmoI	CTYRAG	2 cut(s)	200, 818
Sse9I	AATT	2 cut(s)	109, 564
SsiI	CCGC	4 cut(s)	275, 278, 316, 319
SspDI	GGCGCC	1 cut(s)	134
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	3 cut(s)	426, 623, 846
StyD4I	CCNGG	2 cut(s)	186, 221
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	6 cut(s)	144, 150, 365, 653, 754, 812
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	1 cut(s)	887
TasI	AATT	2 cut(s)	109, 564
TauI	GCSGC	3 cut(s)	280, 319, 322
Tru1I	TTAA	6 cut(s)	300, 419, 504, 525, 819, 864
Tru9I	TTAA	6 cut(s)	300, 419, 504, 525, 819, 864
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	658
Vha464I	CTTAAG	1 cut(s)	818
VneI	GTGCAC	1 cut(s)	806
XmiI	GTMKAC	3 cut(s)	470, 663, 887
XmnI	GAANNNNTTC	1 cut(s)	712
XspI	CTAG	3 cut(s)	426, 623, 846
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.