Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Forward (+)

19391186 .. 19391536

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1091600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCACTGCGGGTTGAACTCAACGCTCAAGGCGGTGGCTGTCGGGGTACCCATGGTGACGTGGCCGATTTTTGTGGAGCAGTTTTACAACGAGAAGCTGATCACGCAGGTGCTTGGTATTGGGGTTGGTGTGGGGGCCAAAGAATGGATGAGGGTTGTGAGGGAGAGTGTAAGGAGGGATGAGATAGAGAAGGCTGTGAGGAGGGCAATGGTGGGTAAGAAGGCAGAGGAGATGAGTACCAGAGCTATGGCTTATGGAGAGATGGCTAGGAGGGCTGTTGAGGTTAAGGGATCATCTTATGAAGATCTGGATGCTTTGATTCAACAGTTATGGTCTTATGATATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008194 GO:0009605 GO:0009607 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050896 GO:0051704 GO:0051707 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

117

Amino Acids

13.05

Weight (kDa)

7.85

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	97
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	2 cut(s)	9, 32
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	62
AfaI	GTAC	2 cut(s)	48, 238
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	16, 323
AjiI	CACGTC	1 cut(s)	60
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	97, 245
AluI	AGCT	2 cut(s)	97, 245
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	2 cut(s)	62, 135
Asp718I	GGTACC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	46
BccI	CCATC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	99
BfaI	CTAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	97
BglII	AGATCT	1 cut(s)	304
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	48, 136
BmsI	GCATC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	153, 184, 316
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	214, 242
BshFI	GGCC	2 cut(s)	64, 137
BshNI	GGYRCC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	144
BsnI	GGCC	2 cut(s)	64, 137
Bsp143I	GATC	3 cut(s)	99, 290, 304
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	2 cut(s)	9, 32
BspANI	GGCC	2 cut(s)	64, 137
BspLI	GGNNCC	2 cut(s)	48, 136
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	3 cut(s)	99, 290, 304
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	153, 184, 316
BstKTI	GATC	3 cut(s)	102, 293, 307
BstMBI	GATC	3 cut(s)	99, 290, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 272
BstX2I	RGATCY	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	64, 137
BtgI	CCRYGG	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	153, 184, 316
BtsI	GCAGTG	1 cut(s)	4
BtsIMutI	CAGTG	1 cut(s)	4
BveI	ACCTGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	47, 237
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	9 cut(s)	38, 64, 97, 137, 194, 245, 251, 266, 275
CviKI_1	RGCY	9 cut(s)	38, 64, 97, 137, 194, 245, 251, 266, 275
CviQI	GTAC	2 cut(s)	47, 237
DpnI	GATC	3 cut(s)	101, 292, 306
DpnII	GATC	3 cut(s)	99, 290, 304
EaeI	YGGCCR	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	55
FaiI	YATR	6 cut(s)	53, 248, 255, 300, 331, 339
FatI	CATG	1 cut(s)	51
FauI	CCCGC	1 cut(s)	2
FbaI	TGATCA	1 cut(s)	99
FokI	GGATG	3 cut(s)	160, 191, 323
FspBI	CTAG	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	64, 137
Hin1II	CATG	1 cut(s)	55
HinfI	GANTC	1 cut(s)	319
HphI	GGTGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	184, 214
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 272
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	55
KpnI	GGTACC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	99, 290, 304
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	3 cut(s)	92, 253, 293
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	101, 292, 306
MboI	GATC	3 cut(s)	99, 290, 304
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	1 cut(s)	304
MnlI	CCTC	8 cut(s)	144, 153, 168, 192, 195, 220, 264, 274
MseI	TTAA	2 cut(s)	285, 349
MslI	CAYNNNNRTG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	103, 272
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	3 cut(s)	99, 290, 304
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	2 cut(s)	48, 136
NmuCI	GTSAC	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	48, 136
PspPI	GGNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	48, 238
RsaNI	GTAC	2 cut(s)	47, 237
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	285, 349
Sau3AI	GATC	3 cut(s)	99, 290, 304
Sau96I	GGNCC	1 cut(s)	135
SetI	ASST	5 cut(s)	62, 99, 111, 247, 285
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SsiI	CCGC	2 cut(s)	9, 32
SspMI	CTAG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	285, 349
Tru9I	TTAA	2 cut(s)	285, 349
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	315
Van91I	CCANNNNNTGG	1 cut(s)	144
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.