Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004961.1

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Forward (+)

31837 .. 32142

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004961.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgttcagtaatgaaacaagtatcccaagtaattggttacgacaagtagcgattcttgagcacgaagctattggagggtttgtgactcattgtggatggaactctgtccttgaagcagtgtctacgggggtgccaatgatcacttggccggtgtctgcggagcagttttacaatgagaagttggtgagtcggatacttagggttggggttggtggtggtgctccaaagtggtcgacatgtgaggaggatagtgtgaagagggaaagccagtgtgaaaagggaagccatgaaaaaggctatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008194 GO:0009605 GO:0009607 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050896 GO:0051704 GO:0051707 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

101

Amino Acids

11.16

Weight (kDa)

5.55

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccI	GTMKAC	2 cut(s)	122, 233
AciI	CCGC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	2 cut(s)	63, 223
AoxI	GGCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	63, 223
BccI	CCATC	1 cut(s)	90
BciVI	GTATCC	2 cut(s)	32, 186
BclI	TGATCA	1 cut(s)	138
BfaI	CTAG	1 cut(s)	304
BfuI	GTATCC	2 cut(s)	32, 186
BmiI	GGNNCC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	2 cut(s)	63, 223
BsiSI	CCGG	1 cut(s)	149
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	63, 223
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	148
BssMI	GATC	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	240
BstXI	CCANNNNNNTGG	1 cut(s)	33
BsuI	GTATCC	2 cut(s)	32, 186
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	101
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 275
Cfr10I	RCCGGY	1 cut(s)	148
CviAII	CATG	2 cut(s)	237, 287
CviJI	RGCY	5 cut(s)	68, 148, 267, 285, 297
CviKI_1	RGCY	5 cut(s)	68, 148, 267, 285, 297
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
FaeI	CATG	2 cut(s)	240, 290
FaiI	YATR	3 cut(s)	238, 288, 300
FatI	CATG	2 cut(s)	236, 286
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	2 cut(s)	122, 233
FokI	GGATG	1 cut(s)	108
FspBI	CTAG	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	2 cut(s)	240, 290
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	3 cut(s)	52, 85, 187
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	123, 234
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	2 cut(s)	123, 234
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	240, 290
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	160, 226
LpnPI	CCDG	2 cut(s)	162, 281
MaeI	CTAG	1 cut(s)	304
MaeIII	GTNAC	2 cut(s)	36, 82
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	63, 223
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	79, 196
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	68, 235, 238, 252
MspI	CCGG	1 cut(s)	149
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	2 cut(s)	240, 290
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	240
PciI	ACATGT	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	52
PleI	GAGTC	2 cut(s)	79, 195
PpsI	GAGTC	2 cut(s)	79, 195
PscI	ACATGT	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	232
Sau3AI	GATC	1 cut(s)	138
SchI	GAGTC	2 cut(s)	79, 196
SduI	GDGCHC	2 cut(s)	63, 223
SetI	ASST	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	304
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	52
TscAI	CASTG	2 cut(s)	123, 275
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	27, 303
TspRI	CASTG	2 cut(s)	123, 275
XceI	RCATGY	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XmiI	GTMKAC	2 cut(s)	122, 233
XspI	CTAG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.