RLG00000015131

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006957
Physical Location & Seq
Forward (+)
62123003 .. 62123551
549 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015131

Sequence Viewer

Length: 507 bp
ATGGCCGCTGCTGAGCAACACCAGTGCTTGAAATGGCTTGATTCTAAGAAACTCAATTCGGTTGTATATGTATGTATCGGAAGCATGATCAACTTTGCTGATTGTCAACTCGTAGAAATTGCAGCAGGCTTTGAGGCCTCTGGACAGAACTTCACTTGGGTTGTGAAGAAACAAATGAAAGAGATAGAAGAGTGGTTGCCTGAAGGATTTGAGAAGAGAATGGAAGGTAAGGGACTCATTATAAGAGATTGGGCTCCTCAAGTGATGATTCTTGAGCATGAAGCAGTAGGAGCTTTTCTCCATCATTGTGGGTGGAACTCATTCCTTGAAGGAGTCTCTGCTGGGATATCGATGATCACCTGGCCGATACTCCGTGTTGGGGTTGCTATTGGTGCTGAAAAATGGGTTTCATTTGAGGATGCAAGTTTGAAGAGTGAGGCCAGTGTGAAGAGGGAGGCCGTAGAGAAGGCTGTGACAAGAATCATGGAGGGTGATGACGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

169

Amino Acids

18.75

Weight (kDa)

5.08

Isoelectric Point (pI)

24.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 15 - 123 2.3e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 2 cut(s) 3, 362
AcuI CTGAAG 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 3 cut(s) 31, 329, 430
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 340
AoxI GGCC 5 cut(s) 3, 135, 362, 438, 456
ApeKI GCWGC 2 cut(s) 8, 122
Asp700I GAANNNNTTC 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 349, 503
BanII GRGCYC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 443
BciT130I CCWGG 1 cut(s) 361
BclI TGATCA 2 cut(s) 87, 354
BcoDI GTCTC 1 cut(s) 340
BisI GCNGC 3 cut(s) 6, 9, 123
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 3 cut(s) 7, 10, 124
Bme1390I CCNGG 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 409
BplI GAGNNNNNCTC 2 cut(s) 282, 314
Bpu1102I GCTNAGC 1 cut(s) 12
BpuEI CTTGAG 2 cut(s) 243, 293
Bsa29I ATCGAT 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 22, 441
BseBI CCWGG 1 cut(s) 361
BseCI ATCGAT 1 cut(s) 350
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 379
BseNI ACTGG 2 cut(s) 22, 441
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 134
BseYI CCCAGC 1 cut(s) 341
BshFI GGCC 5 cut(s) 5, 137, 364, 440, 458
BshVI ATCGAT 1 cut(s) 350
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 5 cut(s) 5, 137, 364, 440, 458
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 87, 354
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 1 cut(s) 6
BspANI GGCC 5 cut(s) 5, 137, 364, 440, 458
BspCNI CTCAG 1 cut(s) 4
BspDI ATCGAT 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 255
BsrI ACTGG 2 cut(s) 22, 441
BssMI GATC 2 cut(s) 87, 354
Bst2UI CCWGG 1 cut(s) 361
Bst6I CTCTTC 4 cut(s) 183, 209, 425, 443
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 12, 45
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 2 cut(s) 90, 357
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 2 cut(s) 87, 354
BstMWI GCNNNNNNNGC 2 cut(s) 290, 392
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 134
BstXI CCANNNNNNTGG 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 350
BsuRI GGCC 5 cut(s) 5, 137, 364, 440, 458
BsuTUI ATCGAT 1 cut(s) 350
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 29, 448
Cac8I GCNNGC 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 350
CviAII CATG 3 cut(s) 85, 278, 484
DdeI CTNAG 2 cut(s) 12, 45
DpnI GATC 2 cut(s) 89, 356
DpnII GATC 2 cut(s) 87, 354
EaeI YGGCCR 2 cut(s) 3, 362
Eam1104I CTCTTC 4 cut(s) 183, 209, 425, 443
EarI CTCTTC 4 cut(s) 183, 209, 425, 443
Eco147I AGGCCT 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 3 cut(s) 88, 281, 487
FaiI YATR 7 cut(s) 67, 69, 73, 86, 242, 279, 485
FaqI GGGAC 1 cut(s) 246
FatI CATG 3 cut(s) 84, 277, 483
FbaI TGATCA 2 cut(s) 87, 354
Fnu4HI GCNGC 3 cut(s) 6, 9, 123
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 3 cut(s) 6, 9, 123
GluI GCNGC 3 cut(s) 6, 9, 123
GsaI CCCAGC 1 cut(s) 345
HaeIII GGCC 5 cut(s) 5, 137, 364, 440, 458
Hin1II CATG 3 cut(s) 88, 281, 487
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 5 cut(s) 41, 234, 268, 333, 480
HphI GGTGA 2 cut(s) 349, 503
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 141, 272
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 4 cut(s) 197, 218, 323, 460
HpyCH4V TGCA 2 cut(s) 122, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 392
HpyF3I CTNAG 2 cut(s) 12, 45
Hsp92II CATG 3 cut(s) 88, 281, 487
Ksp22I TGATCA 2 cut(s) 87, 354
Kzo9I GATC 2 cut(s) 87, 354
LmnI GCTCC 2 cut(s) 259, 290
LpnPI CCDG 8 cut(s) 35, 111, 126, 213, 327, 346, 373, 454
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 472
MalI GATC 2 cut(s) 89, 356
MboI GATC 2 cut(s) 87, 354
MboII GAAGA 5 cut(s) 178, 200, 226, 442, 460
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 2 cut(s) 55, 117
MlyI GAGTC 2 cut(s) 228, 342
MnlI CCTC 8 cut(s) 127, 148, 267, 409, 430, 444, 448, 481
MroXI GAANNNNTTC 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 290, 392
NdeII GATC 2 cut(s) 87, 354
NlaIII CATG 3 cut(s) 88, 281, 487
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 472
PceI AGGCCT 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 3 cut(s) 41, 268, 480
PkrI GCNGC 3 cut(s) 7, 10, 124
PleI GAGTC 2 cut(s) 228, 341
PpsI GAGTC 2 cut(s) 228, 341
PsiI TTATAA 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 3 cut(s) 6, 9, 123
Sau3AI GATC 2 cut(s) 87, 354
SchI GAGTC 2 cut(s) 228, 342
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 256
SetI ASST 3 cut(s) 229, 295, 362
SfaNI GCATC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 258, 272
SmoI CTYRAG 2 cut(s) 258, 272
Sse9I AATT 2 cut(s) 55, 117
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 1 cut(s) 6
StuI AGGCCT 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 359
TaqI TCGA 1 cut(s) 350
TasI AATT 2 cut(s) 55, 117
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 41, 268, 480
TscAI CASTG 2 cut(s) 29, 448
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 2 cut(s) 8, 122
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 191, 294, 399
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 2 cut(s) 29, 448
XmnI GAANNNNTTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.