Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Reverse (-)

25034840 .. 25035470

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCCGTGAAGTTTGCCAAAGCTTTTGGAGCAAGGGTCACTGTGATTAGTTCCTCTCCAAGTAAGGAAAAGGAAGCAGTGGAACGACTTGGTGCGGATTCATTTTTGATCAGTCATGACCATGAAAAATTGGAGGCTGCCTTGGGCACCATGGATGGTATCATAGACACTATTTATGCTTCTCACTCTCTCCTCCCATTGATTGGCTTGCTGAAAACTAGTTTTGGTGAGTGCTCCAGTGGAGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008194 GO:0009605 GO:0009607 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050896 GO:0051704 GO:0051707 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

83

Amino Acids

8.74

Weight (kDa)

5.83

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	1 - 71	2.8e-08	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	203
AhlI	ACTAGT	1 cut(s)	218
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	108
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	148, 244
BpmI	CTGGAG	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	141, 150
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	141, 150
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	149, 236
Bsp143I	GATC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	148, 244
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	141, 150
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	141, 150
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	39, 84, 244
Cac8I	GCNNGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	115
CviAII	CATG	3 cut(s)	116, 122, 151
CviJI	RGCY	5 cut(s)	5, 23, 137, 207, 245
CviKI_1	RGCY	5 cut(s)	5, 23, 137, 207, 245
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	141, 150
EcoT14I	CCWWGG	2 cut(s)	141, 150
ErhI	CCWWGG	2 cut(s)	141, 150
FaeI	CATG	3 cut(s)	119, 125, 154
FaiI	YATR	5 cut(s)	117, 123, 152, 164, 177
FatI	CATG	3 cut(s)	115, 121, 150
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	119, 125, 154
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	119, 125, 154
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	29, 239, 242
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	149, 236
MluCI	AATT	1 cut(s)	128
MnlI	CCTC	3 cut(s)	64, 127, 203
MslI	CAYNNNNRTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	3 cut(s)	119, 125, 154
NlaIV	GGNNCC	2 cut(s)	148, 244
NmuCI	GTSAC	1 cut(s)	37
PagI	TCATGA	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	148, 244
RseI	CAYNNNNRTG	1 cut(s)	120
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	108
SduI	GDGCHC	2 cut(s)	149, 236
SetI	ASST	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	120
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	141, 150
TaaI	ACNGT	1 cut(s)	43
TasI	AATT	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	3 cut(s)	46, 84, 244
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	90, 138
TspRI	CASTG	3 cut(s)	46, 84, 244
Van91I	CCANNNNNTGG	1 cut(s)	203
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.