Rorug04G0081600

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006957
Physical Location & Seq
Forward (+)
12510225 .. 12511238
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0081600.1

Sequence Viewer

Length: 1014 bp
ATGCAACATGTGTTGGTGTCTACCTCTAGGGGCGATCCTTATAAAGAATTATGGAGATGCCTTTGGAAAGCCAAAGTACCTGGAAAAGTTGGTATTTGTGCATGGCGGGCTTGCAACAACCTTCTTCCAACAAGAGATCGACTTCTAACGAAGGGGTATGATGGCCCTCGACATTGTCTTCTTTGCAAGTACTACATTGAGGATGCAAGTCACCTCTTCTGTAAGTGTCCCATAGCATATACAATTCTACATGATGCACCATTCAACTTGCAGAATACTATACTTCCCTCTTTGAATTTCAAGGAATGGATGTTAGAAAGGGCTCTTAGTTTAACACCTGAAATTTTTGCGAAGTTGTTAATGATCATCTGGGCCATATGGAAAAATCGTAACAATTCTCTATGGAATGGCACTCAACAATCTGCTCAAGATATTCTGTTAAGCAGCTTTACATGGTTGGATGAATTCCAAAAAGCCAGAACCACCAGTCAGCTATCTCATGTTAAGCAACAACGACAGCGATGGAAACCTGCTGAAAATGGAGCCTTCAAGCTCAATGTTGATGTTGCATTCCTATCCAACCAAACCAAGGGTGGCATTGGAGGAGTTTTACGCAATGCTTCTGGACAATTTTTTGCGGCCTTTGCCACTCCTATTGCTCACACAGCATCCCCAAAACAATGTGAGTTATACGCTATCCGTGCTGGCCTTGATTTGCTTGCCTCACTTCATATTCAGAATGTTGTTGTTGAATCCGATTGCACTGAGGCAATAGCGGAAGCCTTGTGCCCTGATCATTCCTTGCTAGGAAATGGTGGTCTTGTGGATGACATTAAGAGAGCTGCAAGAACTATTTCTTTGGTCCAAATCCAGTATGCACCACGTTCTTGTAATACGGTTGCCCATAGGCTTGCAGGTATAGGCTTTGAGGCACAAACTAGCACAATTTGGCTTGATCAGATGCCTAGCTGCATCATAGATGTACTAAATGAAGATTGTAAACACCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

337

Amino Acids

37.79

Weight (kDa)

8.64

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 13 - 80 6.1e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 186 - 305 1.6e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
Acc36I ACCTGC 2 cut(s) 538, 905
AccI GTMKAC 1 cut(s) 20
AciI CCGC 3 cut(s) 106, 638, 776
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 3 cut(s) 295, 342, 464
AfaI GTAC 3 cut(s) 78, 191, 984
AfiI CCNNNNNNNGG 1 cut(s) 589
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 5 cut(s) 265, 295, 301, 550, 752
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 5 cut(s) 447, 493, 553, 842, 969
AluI AGCT 5 cut(s) 447, 493, 553, 842, 969
AlwI GGATC 1 cut(s) 29
AoxI GGCC 4 cut(s) 163, 372, 639, 706
ApeKI GCWGC 3 cut(s) 444, 842, 969
ApoI RAATTY 3 cut(s) 295, 342, 464
Asp700I GAANNNNTTC 1 cut(s) 853
AspS9I GGNCC 3 cut(s) 164, 372, 862
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 862
BaeGI GKGCMC 1 cut(s) 791
BanII GRGCYC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 170
BbvI GCAGC 3 cut(s) 456, 829, 956
BccI CCATC 2 cut(s) 155, 516
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 3 cut(s) 363, 793, 955
BfaI CTAG 4 cut(s) 27, 806, 939, 966
BfuAI ACCTGC 2 cut(s) 538, 905
BisI GCNGC 4 cut(s) 445, 639, 843, 970
BlsI GCNGC 4 cut(s) 446, 640, 844, 971
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 862
BmgT120I GGNCC 3 cut(s) 164, 372, 862
BmiI GGNNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 6 cut(s) 47, 193, 244, 677, 951, 981
BpiI GAAGAC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 589
Bse1I ACTGG 2 cut(s) 486, 871
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 5 cut(s) 208, 315, 466, 668, 832
BseLI CCNNNNNNNGG 1 cut(s) 589
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 2 cut(s) 486, 871
BseRI GAGGAG 1 cut(s) 618
BseSI GKGCMC 1 cut(s) 791
BseXI GCAGC 3 cut(s) 456, 829, 956
BshFI GGCC 4 cut(s) 165, 374, 641, 708
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 589
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 4 cut(s) 165, 374, 641, 708
Bsp1286I GDGCHC 2 cut(s) 325, 791
Bsp143I GATC 5 cut(s) 34, 136, 363, 793, 955
BspACI CCGC 3 cut(s) 106, 638, 776
BspANI GGCC 4 cut(s) 165, 374, 641, 708
BspCNI CTCAG 1 cut(s) 757
BspLI GGNNCC 1 cut(s) 544
BspMI ACCTGC 2 cut(s) 538, 905
BspPI GGATC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 622
BsrI ACTGG 2 cut(s) 486, 871
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 5 cut(s) 34, 136, 363, 793, 955
BssT1I CCWWGG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 898
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 5 cut(s) 108, 112, 706, 720, 912
BstDEI CTNAG 2 cut(s) 326, 765
BstF5I GGATG 5 cut(s) 208, 315, 466, 668, 832
BstKTI GATC 5 cut(s) 37, 139, 366, 796, 958
BstMBI GATC 5 cut(s) 34, 136, 363, 793, 955
BstMWI GCNNNNNNNGC 4 cut(s) 107, 644, 665, 701
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 791
BstV1I GCAGC 3 cut(s) 456, 829, 956
BstV2I GAAGAC 1 cut(s) 170
BsuRI GGCC 4 cut(s) 165, 374, 641, 708
BtgZI GCGATG 1 cut(s) 535
BtsCI GGATG 5 cut(s) 208, 315, 466, 668, 832
BtsIMutI CAGTG 1 cut(s) 762
BveI ACCTGC 2 cut(s) 538, 905
Cac8I GCNNGC 5 cut(s) 108, 112, 706, 720, 912
Cfr13I GGNCC 3 cut(s) 164, 372, 862
Csp6I GTAC 3 cut(s) 77, 190, 983
CspCI CAANNNNNGTGG 2 cut(s) 637, 672
CviAII CATG 5 cut(s) 8, 102, 251, 453, 500
CviQI GTAC 3 cut(s) 77, 190, 983
DdeI CTNAG 2 cut(s) 326, 765
DpnI GATC 5 cut(s) 36, 138, 365, 795, 957
DpnII GATC 5 cut(s) 34, 136, 363, 793, 955
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 5 cut(s) 11, 105, 254, 456, 503
FaqI GGGAC 1 cut(s) 213
FatI CATG 5 cut(s) 7, 101, 250, 452, 499
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 377
FbaI TGATCA 3 cut(s) 363, 793, 955
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 4 cut(s) 445, 639, 843, 970
FokI GGATG 5 cut(s) 215, 322, 473, 655, 839
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 4 cut(s) 445, 639, 843, 970
FspBI CTAG 4 cut(s) 27, 806, 939, 966
GluI GCNGC 4 cut(s) 445, 639, 843, 970
HaeIII GGCC 4 cut(s) 165, 374, 641, 708
Hin1II CATG 5 cut(s) 11, 105, 254, 456, 503
HinfI GANTC 1 cut(s) 752
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 21, 1001
Hpy188I TCNGA 3 cut(s) 738, 757, 960
Hpy188III TCNNGA 2 cut(s) 428, 624
Hpy8I GTNNAC 2 cut(s) 21, 1001
HpyAV CCTTC 3 cut(s) 131, 145, 556
HpyCH4III ACNGT 1 cut(s) 898
HpyCH4IV ACGT 1 cut(s) 883
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 644, 665, 701
HpyF3I CTNAG 2 cut(s) 326, 765
HpySE526I ACGT 1 cut(s) 883
Hsp92II CATG 5 cut(s) 11, 105, 254, 456, 503
Ksp22I TGATCA 3 cut(s) 363, 793, 955
Kzo9I GATC 5 cut(s) 34, 136, 363, 793, 955
LmnI GCTCC 1 cut(s) 542
Lsp1109I GCAGC 3 cut(s) 456, 829, 956
LweI GCATC 6 cut(s) 47, 193, 244, 677, 951, 981
MaeI CTAG 4 cut(s) 27, 806, 939, 966
MaeII ACGT 1 cut(s) 883
MaeIII GTNAC 2 cut(s) 209, 389
MalI GATC 5 cut(s) 36, 138, 365, 795, 957
MboI GATC 5 cut(s) 34, 136, 363, 793, 955
MboII GAAGA 4 cut(s) 116, 170, 208, 1004
MfeI CAATTG 1 cut(s) 1009
MhlI GDGCHC 2 cut(s) 325, 791
MluCI AATT 9 cut(s) 47, 243, 295, 342, 394, 464, 629, 945, 1009
MmeI TCCRAC 3 cut(s) 152, 438, 603
MnlI CCTC 9 cut(s) 34, 177, 193, 224, 298, 596, 733, 760, 922
MroXI GAANNNNTTC 1 cut(s) 853
MseI TTAA 5 cut(s) 332, 359, 440, 504, 834
MspR9I CCNGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 1009
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 4 cut(s) 107, 644, 665, 701
NdeI CATATG 1 cut(s) 377
NdeII GATC 5 cut(s) 34, 136, 363, 793, 955
NlaIII CATG 5 cut(s) 11, 105, 254, 456, 503
NlaIV GGNNCC 1 cut(s) 544
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 1 cut(s) 11
PciI ACATGT 1 cut(s) 7
PctI GAATGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 853
PfeI GAWTC 1 cut(s) 752
PflFI GACNNNGTC 1 cut(s) 174
PkrI GCNGC 4 cut(s) 446, 640, 844, 971
PscI ACATGT 1 cut(s) 7
PsiI TTATAA 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 544
PspPI GGNCC 3 cut(s) 164, 372, 862
PsyI GACNNNGTC 1 cut(s) 174
RsaI GTAC 3 cut(s) 78, 191, 984
RsaNI GTAC 3 cut(s) 77, 190, 983
SaqAI TTAA 5 cut(s) 332, 359, 440, 504, 834
SatI GCNGC 4 cut(s) 445, 639, 843, 970
Sau3AI GATC 5 cut(s) 34, 136, 363, 793, 955
Sau96I GGNCC 3 cut(s) 164, 372, 862
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 325, 791
SfaNI GCATC 6 cut(s) 47, 193, 244, 677, 951, 981
SinI GGWCC 1 cut(s) 862
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 9 cut(s) 47, 243, 295, 342, 394, 464, 629, 945, 1009
SsiI CCGC 3 cut(s) 106, 638, 776
SspMI CTAG 4 cut(s) 27, 806, 939, 966
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 1 cut(s) 898
TaiI ACGT 1 cut(s) 886
TaqI TCGA 2 cut(s) 139, 169
TasI AATT 9 cut(s) 47, 243, 295, 342, 394, 464, 629, 945, 1009
TatI WGTACW 2 cut(s) 189, 982
TauI GCSGC 1 cut(s) 641
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 5 cut(s) 332, 359, 440, 504, 834
Tru9I TTAA 5 cut(s) 332, 359, 440, 504, 834
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 3 cut(s) 444, 842, 969
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 477, 719, 1005
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 1 cut(s) 769
Tth111I GACNNNGTC 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 862
XapI RAATTY 3 cut(s) 295, 342, 464
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 590
XmiI GTMKAC 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 853
XspI CTAG 4 cut(s) 27, 806, 939, 966
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.