Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001425.1

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Forward (+)

45866 .. 47281

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001425.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgggtgtaggccacagtttactcctcttagacattgccaaactatttgcgtcacgtggtgtaaaatcctccataataaccacccctgttagtgctgcacttctctccaaacaactccgaacaagcaaaagtttgggttctggaattgaatttcttgtcatcaaattcccatcggctgaagtagggttatctgaaggtattgaaacttcgaactcaacaacaaccctagaaatgaagggaaaactcatggaagctaccgctctgcttgaaacaaaggtagagcagattctggaccaacatcgtcttcactgccttgttgcagatgctgtatttcattgggctatagatgttgctgccaagtttgggattctgaggctcgtctttcatggagctgattttttccccgttgtgtgcttcattgagtgtgatgttgtaccaacctcacatgaagaagaagataaatcagcgaggggagaggaaggctctgctgatggagtacatgaatactttgattggcttaatactaaggaacccaattcggttgtttatatatgttttagaagccttaccaatttcagtgatgctcagcttgtagaaattgccctggctcttgagtcttctcatcagcaattcatttcggttgtcaagaaagaaaagaatgataaaggagagtggctgcctgatgaaggatttgagcagaggttagaagataagggactaataataagaggagtggttgctggggtgccaatgatcacatggccagtgtccgcagagcaattctacaatgagaagttggtgactcagttgcttgggattagggttgctattggggctgaaaagtgggatacatttggggatgatagtctgaagagtgaagccagcgtgaagatggaggccatagagaaggctgtgactgaaatcatggtgggtgatgaagcacaggaaatgaaaagcagagttaaagagcttggagagataggaagcaaggctgttgaagaaggcggttcatcgttctccgatttaactgctcttattgaagagttgaggttccttgggacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

354

Amino Acids

38.83

Weight (kDa)

4.84

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	745
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	3 cut(s)	258, 771, 1005
AcoI	YGGCCR	1 cut(s)	761
AcsI	RAATTY	2 cut(s)	149, 164
AcuI	CTGAAG	3 cut(s)	198, 213, 890
AcvI	CACGTG	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	435, 498
AfiI	CCNNNNNNNGG	2 cut(s)	363, 686
AgsI	TTSAA	5 cut(s)	149, 203, 269, 998, 1040
AjnI	CCWGG	1 cut(s)	603
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	254, 392, 589, 970
AluI	AGCT	4 cut(s)	254, 392, 589, 970
AlwNI	CAGNNNCTG	2 cut(s)	289, 326
AoxI	GGCC	3 cut(s)	10, 761, 897
ApeKI	GCWGC	3 cut(s)	95, 353, 676
ApoI	RAATTY	2 cut(s)	149, 164
AspS9I	GGNCC	2 cut(s)	292, 1059
AsuHPI	GGTGA	2 cut(s)	811, 944
AsuII	TTCGAA	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	292, 1059
BalI	TGGCCA	1 cut(s)	763
BanI	GGYRCC	1 cut(s)	745
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
BbrPI	CACGTG	1 cut(s)	56
BbsI	GAAGAC	2 cut(s)	296, 609
BbvI	GCAGC	3 cut(s)	82, 340, 663
BccI	CCATC	3 cut(s)	178, 485, 886
BcgI	CGANNNNNNTGC	2 cut(s)	1010, 1044
BciT130I	CCWGG	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	841
BclI	TGATCA	1 cut(s)	753
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	841
BisI	GCNGC	3 cut(s)	96, 354, 677
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	3 cut(s)	97, 355, 678
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	2 cut(s)	292, 1059
BmgT120I	GGNCC	2 cut(s)	292, 1059
BmiI	GGNNCC	4 cut(s)	531, 747, 1052, 1060
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	2 cut(s)	313, 571
BpiI	GAAGAC	2 cut(s)	296, 609
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu1102I	GCTNAGC	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	603, 1054
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 686
Bse1I	ACTGG	1 cut(s)	764
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	603, 1054
BseGI	GGATG	1 cut(s)	865
BseLI	CCNNNNNNNGG	2 cut(s)	363, 686
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	3 cut(s)	362, 599, 818
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	2 cut(s)	14, 744
BseXI	GCAGC	3 cut(s)	82, 340, 663
BseYI	CCCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	12, 763, 899
BshNI	GGYRCC	1 cut(s)	745
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	363, 686
BsmFI	GGGAC	1 cut(s)	729
BsnI	GGCC	3 cut(s)	12, 763, 899
Bsp119I	TTCGAA	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	753
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	3 cut(s)	258, 771, 1005
BspANI	GGCC	3 cut(s)	12, 763, 899
BspCNI	CTCAG	3 cut(s)	363, 598, 817
BspLI	GGNNCC	4 cut(s)	531, 747, 1052, 1060
BspT104I	TTCGAA	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	745
BsrBI	CCGCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	764
BssECI	CCNNGG	2 cut(s)	603, 1054
BssMI	GATC	1 cut(s)	753
BssT1I	CCWWGG	1 cut(s)	1054
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	866, 1035
BstBAI	YACGTR	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	883
BstDEI	CTNAG	5 cut(s)	28, 371, 525, 585, 804
BstENI	CCTNNNNNAGG	1 cut(s)	684
BstF5I	GGATG	1 cut(s)	865
BstKTI	GATC	1 cut(s)	756
BstMBI	GATC	1 cut(s)	753
BstMWI	GCNNNNNNNGC	1 cut(s)	833
BstNI	CCWGG	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	82, 340, 663
BstV2I	GAAGAC	2 cut(s)	296, 609
BsuI	GTATCC	1 cut(s)	841
BsuRI	GGCC	3 cut(s)	12, 763, 899
BtsCI	GGATG	1 cut(s)	865
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	3 cut(s)	307, 583, 771
Cac8I	GCNNGC	1 cut(s)	883
CaiI	CAGNNNCTG	2 cut(s)	289, 326
Cfr13I	GGNCC	2 cut(s)	292, 1059
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	434, 497
CviAII	CATG	6 cut(s)	247, 386, 446, 500, 759, 925
CviQI	GTAC	2 cut(s)	434, 497
DdeI	CTNAG	5 cut(s)	28, 371, 525, 585, 804
DpnI	GATC	1 cut(s)	755
DpnII	GATC	1 cut(s)	753
DraIII	CACNNNGTG	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	761
Eam1104I	CTCTTC	2 cut(s)	866, 1035
EarI	CTCTTC	2 cut(s)	866, 1035
Eco130I	CCWWGG	1 cut(s)	1054
Eco47I	GGWCC	2 cut(s)	292, 1059
Eco57I	CTGAAG	3 cut(s)	198, 213, 890
Eco72I	CACGTG	1 cut(s)	56
EcoNI	CCTNNNNNAGG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	1054
ErhI	CCWWGG	1 cut(s)	1054
FaeI	CATG	6 cut(s)	250, 389, 449, 503, 762, 928
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	6 cut(s)	246, 385, 445, 499, 758, 924
FbaI	TGATCA	1 cut(s)	753
Fnu4HI	GCNGC	3 cut(s)	96, 354, 677
FokI	GGATG	1 cut(s)	872
Fsp4HI	GCNGC	3 cut(s)	96, 354, 677
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	3 cut(s)	96, 354, 677
GsaI	CCCAGC	1 cut(s)	744
HaeIII	GGCC	3 cut(s)	12, 763, 899
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	250, 389, 449, 503, 762, 928
HinfI	GANTC	4 cut(s)	286, 367, 614, 802
HphI	GGTGA	2 cut(s)	811, 944
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	5 cut(s)	119, 193, 372, 870, 1021
Hpy188III	TCNNGA	4 cut(s)	141, 290, 611, 646
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	6 cut(s)	188, 229, 473, 680, 901, 995
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	98, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	833
HpyF3I	CTNAG	5 cut(s)	28, 371, 525, 585, 804
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	6 cut(s)	250, 389, 449, 503, 762, 928
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	1 cut(s)	753
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	3 cut(s)	82, 340, 663
LweI	GCATC	2 cut(s)	313, 571
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	3 cut(s)	51, 799, 913
MalI	GATC	1 cut(s)	755
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	763
MluCI	AATT	8 cut(s)	144, 149, 164, 535, 571, 597, 629, 779
MluNI	TGGCCA	1 cut(s)	763
MlyI	GAGTC	2 cut(s)	623, 796
Mox20I	TGGCCA	1 cut(s)	763
MscI	TGGCCA	1 cut(s)	763
MseI	TTAA	3 cut(s)	519, 963, 1025
Msp20I	TGGCCA	1 cut(s)	763
MspR9I	CCNGG	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	833
NdeII	GATC	1 cut(s)	753
NlaIII	CATG	6 cut(s)	250, 389, 449, 503, 762, 928
NlaIV	GGNNCC	4 cut(s)	531, 747, 1052, 1060
NmuCI	GTSAC	3 cut(s)	51, 799, 913
NspV	TTCGAA	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	286, 367
PkrI	GCNGC	3 cut(s)	97, 355, 678
PleI	GAGTC	2 cut(s)	622, 796
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
PpsI	GAGTC	2 cut(s)	622, 796
Ppu21I	YACGTR	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	1059
Psp5II	RGGWCCY	1 cut(s)	1059
Psp6I	CCWGG	1 cut(s)	603
PspCI	CACGTG	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	531, 747, 1052, 1060
PspPI	GGNCC	2 cut(s)	292, 1059
PspPPI	RGGWCCY	1 cut(s)	1059
PstNI	CAGNNNCTG	2 cut(s)	289, 326
RsaI	GTAC	2 cut(s)	435, 498
RsaNI	GTAC	2 cut(s)	434, 497
SaqAI	TTAA	3 cut(s)	519, 963, 1025
SatI	GCNGC	3 cut(s)	96, 354, 677
Sau3AI	GATC	1 cut(s)	753
Sau96I	GGNCC	2 cut(s)	292, 1059
SchI	GAGTC	2 cut(s)	623, 796
ScrFI	CCNGG	1 cut(s)	605
SfaNI	GCATC	2 cut(s)	313, 571
SfcI	CTRYAG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	2 cut(s)	292, 1059
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	8 cut(s)	144, 149, 164, 535, 571, 597, 629, 779
SsiI	CCGC	3 cut(s)	258, 771, 1005
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	603
StyI	CCWWGG	1 cut(s)	1054
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	209
TasI	AATT	8 cut(s)	144, 149, 164, 535, 571, 597, 629, 779
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	2 cut(s)	286, 367
Tru1I	TTAA	3 cut(s)	519, 963, 1025
Tru9I	TTAA	3 cut(s)	519, 963, 1025
TscAI	CASTG	3 cut(s)	314, 583, 771
TseFI	GTSAC	3 cut(s)	51, 799, 913
TseI	GCWGC	3 cut(s)	95, 353, 676
Tsp45I	GTSAC	3 cut(s)	51, 799, 913
TspRI	CASTG	3 cut(s)	314, 583, 771
VpaK11BI	GGWCC	2 cut(s)	292, 1059
XagI	CCTNNNNNAGG	1 cut(s)	684
XapI	RAATTY	2 cut(s)	149, 164
XcmI	CCANNNNNNNNNTGG	2 cut(s)	756, 889
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.