RchiOBHm_Chr6g0256091

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006957
Physical Location & Seq
Reverse (-)
11448218 .. 11448799
582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22970

Sequence Viewer

Length: 525 bp
ATGACCAATTTCAGTGATTCTCAGCTCCTGGAAATTGCAGTAGGGATTGAGGCTAGTGGGCAGGAGTTCATTTGGGTTGTGAAGAAAGAAAACAATGAAAAAGAAGAGTGGTTGCCAAAAGGGTTTAAGCAGAGAATGGAAGCTATTGGAGGGTTTGTGACTCATTGTGGATGGAACTCTATCCATGAAGCAGTGTCGGCTGGGGTGCCAATGATCACTTGGCAAGTGTCTGCAGAGCAGTTTTACAATGAAAAGTTCGTGACTCAGATACTTGGGATTGGGGTTGTTGTTGGTGCTCAAAAATGGTCGACATTTGAGGAGGATAGTGTGAAGAGGGAAGCCAGTGTGAAAAGGGAGGCCATAGAAAAGGCTTTGACTAGAATCATGGTGGGTGGTGAAGCTGAAAAAATCAGAAGCAAAGCCAAAGCGCTTGGTGAGATGGCAACAAGGGTTGTTCAAGAAGGTGGTTCATCTTTCTCGGATATGAATGCTCTAATTGAAGATTTGAGGTCCCTCAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

174

Amino Acids

19.33

Weight (kDa)

5.38

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 89 1.5e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 308
AfeI AGCGCT 1 cut(s) 429
AgsI TTSAA 2 cut(s) 458, 500
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 3 cut(s) 25, 143, 401
AluI AGCT 3 cut(s) 25, 143, 401
Alw21I GWGCWC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 28
Aor51HI AGCGCT 1 cut(s) 429
AoxI GGCC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 510
AsuHPI GGTGA 2 cut(s) 407, 446
AvaII GGWCC 1 cut(s) 510
AxyI CCTNAGG 1 cut(s) 515
BanI GGYRCC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 2 cut(s) 165, 433
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 213
BfaI CTAG 2 cut(s) 54, 378
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 2 cut(s) 207, 512
BmrFI CCNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse1I ACTGG 1 cut(s) 342
Bse21I CCTNAGG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 35, 278
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 496
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 1 cut(s) 213
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 2 cut(s) 34, 277
BspLI GGNNCC 2 cut(s) 207, 512
BspMAI CTGCAG 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 342
BssMI GATC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 99, 326
BstDEI CTNAG 3 cut(s) 21, 264, 515
BstF5I GGATG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 515
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 19, 198, 349
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 510
CviAII CATG 2 cut(s) 185, 385
DdeI CTNAG 3 cut(s) 21, 264, 515
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 99, 326
EarI CTCTTC 2 cut(s) 99, 326
Eco47I GGWCC 1 cut(s) 510
Eco47III AGCGCT 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 510
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 188, 388
FaiI YATR 4 cut(s) 186, 362, 386, 485
FaqI GGGAC 1 cut(s) 496
FatI CATG 2 cut(s) 184, 384
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 1 cut(s) 308
FokI GGATG 1 cut(s) 183
FspBI CTAG 2 cut(s) 54, 378
GlaI GCGC 1 cut(s) 429
GsaI CCCAGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 1 cut(s) 359
HhaI GCGC 1 cut(s) 430
Hin1II CATG 2 cut(s) 188, 388
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 4 cut(s) 17, 160, 262, 381
HphI GGTGA 2 cut(s) 407, 446
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 3 cut(s) 267, 413, 481
Hpy188III TCNNGA 2 cut(s) 259, 458
Hpy8I GTNNAC 1 cut(s) 309
HpyAV CCTTC 1 cut(s) 455
HpyCH4V TGCA 2 cut(s) 38, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 21, 264, 515
Hsp92II CATG 2 cut(s) 188, 388
HspAI GCGC 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 6 cut(s) 14, 41, 47, 186, 355, 502
MaeI CTAG 2 cut(s) 54, 378
MaeIII GTNAC 2 cut(s) 157, 259
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 4 cut(s) 94, 116, 343, 512
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 3 cut(s) 7, 33, 495
MlyI GAGTC 2 cut(s) 154, 256
MnlI CCTC 8 cut(s) 43, 143, 310, 313, 327, 349, 501, 524
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 213
NlaIII CATG 2 cut(s) 188, 388
NlaIV GGNNCC 2 cut(s) 207, 512
NmuCI GTSAC 2 cut(s) 157, 259
PctI GAATGC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 17, 381
PfoI TCCNGGA 1 cut(s) 27
PleI GAGTC 2 cut(s) 154, 256
PpsI GAGTC 2 cut(s) 154, 256
PpuMI RGGWCCY 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 207, 512
PspPI GGNCC 1 cut(s) 510
PspPPI RGGWCCY 1 cut(s) 510
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 28
SalI GTCGAC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 2 cut(s) 154, 256
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 298
SetI ASST 5 cut(s) 27, 145, 403, 466, 512
SfcI CTRYAG 1 cut(s) 231
SinI GGWCC 1 cut(s) 510
Sse9I AATT 3 cut(s) 7, 33, 495
SspMI CTAG 2 cut(s) 54, 378
StyD4I CCNGG 1 cut(s) 27
TaqI TCGA 1 cut(s) 308
TasI AATT 3 cut(s) 7, 33, 495
TfiI GAWTC 2 cut(s) 17, 381
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 19, 198, 349
TseFI GTSAC 2 cut(s) 157, 259
Tsp45I GTSAC 2 cut(s) 157, 259
TspDTI ATGAA 6 cut(s) 58, 111, 201, 264, 459, 500
TspRI CASTG 3 cut(s) 19, 198, 349
VpaK11BI GGWCC 1 cut(s) 510
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 308
XspI CTAG 2 cut(s) 54, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.