RchiOBHm_Chr6g0257741

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006957
Physical Location & Seq
Reverse (-)
13103364 .. 13103792
429 bp
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UTR
Exon/CDS
Intron
PRQ23115

Sequence Viewer

Length: 408 bp
ATGAGAGGCTGGGCTCCCCAACTACTAATTCTTGAACATGAAGCAACTGGGGCCTTTGTCACTCATTGCGGGTGGAACTCGATCCTTGAAGGAGTGTCTGCTGGGGTTCCAATGATCACATGGCCGGTGTCCGGAGAGCAGTTTTACAATGAGAAGCTGGTGACTGAGTTACTTAGGATTGGGGTTGCCGTTGGTGCCGAAAAGTGGGCTACATTTGGGGAGGAAAGTGTGAAGAGGGAGGCCATAGAGAAGGCAGTCGCTGAAATCATGGTGGGGGATGAAGCAGAGGAAATGAGAAGCAGAGCTAAAGCGCTTAGAGAGATGGCAAGCAGGGCTGTTGAAGAAGGTGGTTCATCATACCGCGATTTAACTGCTCTAATTGAAGAGTTAAAGTCCCTAGTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

135

Amino Acids

14.82

Weight (kDa)

4.84

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 3 - 55 1.1e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 1 cut(s) 363
AccIII TCCGGA 1 cut(s) 131
AciI CCGC 2 cut(s) 69, 361
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 131, 204
AgsI TTSAA 4 cut(s) 35, 89, 341, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 2 cut(s) 157, 305
AluI AGCT 2 cut(s) 157, 305
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 131
Aor51HI AGCGCT 1 cut(s) 312
AoxI GGCC 3 cut(s) 51, 122, 240
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 172
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 16
BccI CCATC 1 cut(s) 316
BceAI ACGGC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BclI TGATCA 1 cut(s) 114
BfaI CTAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 4 cut(s) 15, 52, 108, 196
BmrI ACTGGG 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 204
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 131
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 131, 204
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 52
BseYI CCCAGC 2 cut(s) 9, 101
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 3 cut(s) 53, 124, 242
BshNI GGYRCC 1 cut(s) 194
BsiSI CCGG 2 cut(s) 125, 132
BslFI GGGAC 2 cut(s) 379, 386
BslI CCNNNNNNNGG 2 cut(s) 131, 204
BsmFI GGGAC 2 cut(s) 379, 386
BsnI GGCC 3 cut(s) 53, 124, 242
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 2 cut(s) 81, 114
BspACI CCGC 2 cut(s) 69, 361
BspANI GGCC 3 cut(s) 53, 124, 242
BspCNI CTCAG 1 cut(s) 157
BspEI TCCGGA 1 cut(s) 131
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 4 cut(s) 15, 52, 108, 196
BspPI GGATC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 124
BssMI GATC 2 cut(s) 81, 114
Bst6I CTCTTC 2 cut(s) 227, 378
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 4 cut(s) 165, 173, 314, 405
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 363
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 84, 117
BstMBI GATC 2 cut(s) 81, 114
BstMWI GCNNNNNNNGC 3 cut(s) 50, 194, 332
BstUI CGCG 1 cut(s) 363
BsuRI GGCC 3 cut(s) 53, 124, 242
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 51
CviAII CATG 3 cut(s) 38, 120, 268
CviJI RGCY 9 cut(s) 9, 14, 53, 124, 157, 209, 242, 305, 335
CviKI_1 RGCY 9 cut(s) 9, 14, 53, 124, 157, 209, 242, 305, 335
DdeI CTNAG 4 cut(s) 165, 173, 314, 405
DpnI GATC 2 cut(s) 83, 116
DpnII GATC 2 cut(s) 81, 114
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 227, 378
EarI CTCTTC 2 cut(s) 227, 378
Eco24I GRGCYC 1 cut(s) 16
Eco47III AGCGCT 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 16
FaeI CATG 3 cut(s) 41, 123, 271
FaiI YATR 5 cut(s) 39, 121, 245, 269, 358
FaqI GGGAC 2 cut(s) 379, 386
FatI CATG 3 cut(s) 37, 119, 267
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 114
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 16
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 312
GsaI CCCAGC 2 cut(s) 13, 105
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 3 cut(s) 53, 124, 242
HapII CCGG 2 cut(s) 125, 132
HhaI GCGC 1 cut(s) 313
Hin1II CATG 3 cut(s) 41, 123, 271
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HpaII CCGG 2 cut(s) 125, 132
HphI GGTGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 32, 132
HpyAV CCTTC 3 cut(s) 83, 244, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 194, 332
HpyF3I CTNAG 4 cut(s) 165, 173, 314, 405
Hsp92II CATG 3 cut(s) 41, 123, 271
HspAI GCGC 1 cut(s) 311
Kpn2I TCCGGA 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 2 cut(s) 81, 114
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 6 cut(s) 33, 87, 138, 143, 145, 316
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 3 cut(s) 58, 160, 168
MalI GATC 2 cut(s) 83, 116
MboI GATC 2 cut(s) 81, 114
MboII GAAGA 3 cut(s) 244, 353, 395
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 27, 378
MnlI CCTC 4 cut(s) 214, 228, 232, 280
MroI TCCGGA 1 cut(s) 131
MseI TTAA 2 cut(s) 368, 389
MspI CCGG 2 cut(s) 125, 132
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 3 cut(s) 50, 194, 332
NdeII GATC 2 cut(s) 81, 114
NlaIII CATG 3 cut(s) 41, 123, 271
NlaIV GGNNCC 4 cut(s) 15, 52, 108, 196
NmuCI GTSAC 2 cut(s) 58, 160
PspFI CCCAGC 2 cut(s) 9, 101
PspN4I GGNNCC 4 cut(s) 15, 52, 108, 196
PspPI GGNCC 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 368, 389
Sau3AI GATC 2 cut(s) 81, 114
Sau96I GGNCC 1 cut(s) 51
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 159, 307, 349
Sse9I AATT 2 cut(s) 27, 378
SsiI CCGC 2 cut(s) 69, 361
SspMI CTAG 1 cut(s) 398
TaqI TCGA 1 cut(s) 80
TasI AATT 2 cut(s) 27, 378
Tru1I TTAA 2 cut(s) 368, 389
Tru9I TTAA 2 cut(s) 368, 389
TseFI GTSAC 2 cut(s) 58, 160
Tsp45I GTSAC 2 cut(s) 58, 160
TspDTI ATGAA 3 cut(s) 54, 294, 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.