Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001896.1

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Forward (+)

42020 .. 42604

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001896.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgatctattttgctgattgtcagctattagaaatttcaataggccttgaggcttctggacaagacttcatttgggatgtgaagaaagaaaagaaagacgcagaagaatggttgcccgaaggatttgagaagagaatggaaggtaagggactgattataagagaatgggctccccaactgctgattcttgagcatgaagcaataggagcatttgtgactcattgtgggtggaactctaccgttgatggagtgtctgccggggttccaatgattgcatggccggtgttcggcgagcagttttgcaatgagaagttggatctaactgcgaagactgaatcaagtgtgaggagggaggctatagaggaggctatgactagaatcatggtaggtgatgaagcaatggaaatgagaagcagtgttaaagagcttggagagaaaacaatgagggccgtggaagaaggtatctcatctttcttcgatttaacttctctagttgaagaattgaacaacaatttggaggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

174

Amino Acids

19.6

Weight (kDa)

4.47

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	39, 497, 505
AjuI	GAANNNNNNNTTGG	3 cut(s)	168, 200, 497
AluBI	AGCT	2 cut(s)	25, 427
AluI	AGCT	2 cut(s)	25, 427
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	4 cut(s)	43, 278, 447, 519
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	335
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	434
BcnI	CCSGG	1 cut(s)	259
BfaI	CTAG	3 cut(s)	375, 491, 523
BfmI	CTRYAG	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	2 cut(s)	171, 264
BmrFI	CCNGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	68, 209
BpuMI	CCSGG	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	258, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	280
Bse3DI	GCAATG	2 cut(s)	310, 405
BseDI	CCNNGG	2 cut(s)	258, 450
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	2 cut(s)	310, 405
BseRI	GAGGAG	2 cut(s)	361, 377
BshFI	GGCC	4 cut(s)	45, 280, 449, 521
BsiSI	CCGG	2 cut(s)	258, 281
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	4 cut(s)	45, 280, 449, 521
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	3, 316
BspANI	GGCC	4 cut(s)	45, 280, 449, 521
BspLI	GGNNCC	2 cut(s)	171, 264
BspPI	GGATC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	310, 405
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	258, 450
BssMI	GATC	2 cut(s)	3, 316
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	293
BstDSI	CCRYGG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	6, 319
BstMBI	GATC	2 cut(s)	3, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	45, 280, 449, 521
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	1 cut(s)	107
CviAII	CATG	3 cut(s)	194, 276, 382
DpnI	GATC	2 cut(s)	5, 318
DpnII	GATC	2 cut(s)	3, 316
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco147I	AGGCCT	2 cut(s)	45, 521
Eco24I	GRGCYC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	3 cut(s)	197, 279, 385
FaiI	YATR	6 cut(s)	158, 195, 277, 359, 371, 383
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	193, 275, 381
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	172
FspBI	CTAG	3 cut(s)	375, 491, 523
HaeIII	GGCC	4 cut(s)	45, 280, 449, 521
HapII	CCGG	2 cut(s)	258, 281
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	197, 279, 385
HinfI	GANTC	4 cut(s)	184, 217, 335, 378
HpaII	CCGG	2 cut(s)	258, 281
HphI	GGTGA	1 cut(s)	401
Hpy188III	TCNNGA	2 cut(s)	57, 188
HpyAV	CCTTC	3 cut(s)	113, 134, 452
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	275, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	197, 279, 385
Kzo9I	GATC	2 cut(s)	3, 316
LmnI	GCTCC	2 cut(s)	175, 206
LpnPI	CCDG	3 cut(s)	42, 271, 294
MaeI	CTAG	3 cut(s)	375, 491, 523
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	5, 318
MboI	GATC	2 cut(s)	3, 316
MboII	GAAGA	7 cut(s)	94, 116, 142, 340, 466, 467, 509
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	3 cut(s)	33, 500, 511
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	8 cut(s)	43, 339, 342, 346, 355, 358, 438, 511
MseI	TTAA	2 cut(s)	420, 482
MspI	CCGG	2 cut(s)	258, 281
MspR9I	CCNGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	3, 316
NlaIII	CATG	3 cut(s)	197, 279, 385
NlaIV	GGNNCC	2 cut(s)	171, 264
NmuCI	GTSAC	1 cut(s)	214
PceI	AGGCCT	2 cut(s)	45, 521
PfeI	GAWTC	3 cut(s)	184, 335, 378
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	171, 264
PspPI	GGNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	420, 482
Sau3AI	GATC	2 cut(s)	3, 316
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	5 cut(s)	27, 145, 391, 429, 463
SfcI	CTRYAG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	47, 188
SmoI	CTYRAG	2 cut(s)	47, 188
Sse9I	AATT	3 cut(s)	33, 500, 511
SseBI	AGGCCT	2 cut(s)	45, 521
SspMI	CTAG	3 cut(s)	375, 491, 523
StuI	AGGCCT	2 cut(s)	45, 521
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	477
TasI	AATT	3 cut(s)	33, 500, 511
TfiI	GAWTC	3 cut(s)	184, 335, 378
Tru1I	TTAA	2 cut(s)	420, 482
Tru9I	TTAA	2 cut(s)	420, 482
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	58, 210, 408
TspRI	CASTG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XspI	CTAG	3 cut(s)	375, 491, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.