Rorug05G0563900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006957
Physical Location & Seq
Reverse (-)
75547144 .. 75547622
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0563900.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACCAAGCAGACCGCTCGCAAGTCCACCGGAGGAAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCTGCCCGGAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCTCACCGGTTCAGGCCGGGAACGGTGGCGCTGAGAGAGATCAGGAAGTACCAGAAGAGCACGGAGCTCCTGATCCGCAAGCTTCCGTTCCAGAGGCTTGTGAGGGAGATTGCTCAGGATTTCAAGACTGATCTCCGATTCCAGAGCAGCGCTGTGGCGGCGCTTCAGGAGGCGGCGGAGGCGTATCTGGTGGGTCTTTTCGAGGATACGAATCTGTGTGCTATTCATGCGAAGAGGGTTACCATTATGCCCAAGGATATTCAGCTTGCTAGGAGAATCAGAGGCGAGAGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 5 cut(s) 21, 190, 272, 287, 290
AclWI GGATC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 2 cut(s) 10, 164
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 2 cut(s) 85, 98
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 4 cut(s) 61, 181, 196, 379
AluI AGCT 4 cut(s) 61, 181, 196, 379
Alw21I GWGCWC 2 cut(s) 176, 183
AlwI GGATC 1 cut(s) 181
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 3 cut(s) 58, 74, 261
AsiGI ACCGGT 1 cut(s) 120
AspLEI GCGC 4 cut(s) 49, 145, 266, 277
AsuC2I CCSGG 2 cut(s) 79, 132
AsuHPI GGTGA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 176, 183
BbvI GCAGC 3 cut(s) 61, 70, 273
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciVI GTATCC 1 cut(s) 313
BcnI CCSGG 2 cut(s) 79, 132
BfaI CTAG 1 cut(s) 384
BfoI RGCGCY 4 cut(s) 50, 146, 267, 278
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 5 cut(s) 59, 75, 262, 273, 288
BlsI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Bme1390I CCNGG 2 cut(s) 79, 132
BmiI GGNNCC 2 cut(s) 48, 90
BmrFI CCNGG 2 cut(s) 79, 132
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 79, 132
BsaBI GATNNNNATC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 50, 69, 366
BsaWI WCCGGW 3 cut(s) 35, 98, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 98
Bse118I RCCGGY 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 50, 69, 366
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 85, 98
BseMII CTCAG 2 cut(s) 137, 242
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 61, 70, 273
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 176, 183
BsiSI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
BslI CCNNNNNNNGG 2 cut(s) 85, 98
BsnI GGCC 1 cut(s) 130
Bsp1286I GDGCHC 2 cut(s) 176, 183
Bsp143I GATC 3 cut(s) 153, 186, 244
BspACI CCGC 5 cut(s) 21, 190, 272, 287, 290
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 138, 241
BspLI GGNNCC 2 cut(s) 48, 90
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 50, 69, 366
BssMI GATC 3 cut(s) 153, 186, 244
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 69, 366
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 164, 341
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 4 cut(s) 25, 63, 194, 381
BstDEI CTNAG 3 cut(s) 146, 228, 408
BstEII GGTNACC 1 cut(s) 352
BstH2I RGCGCY 4 cut(s) 50, 146, 267, 278
BstHHI GCGC 4 cut(s) 49, 145, 266, 277
BstKTI GATC 3 cut(s) 156, 189, 247
BstMBI GATC 3 cut(s) 153, 186, 244
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 77, 130
BstV1I GCAGC 3 cut(s) 61, 70, 273
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 130
Cac8I GCNNGC 4 cut(s) 25, 63, 194, 381
CfoI GCGC 4 cut(s) 49, 145, 266, 277
Cfr10I RCCGGY 1 cut(s) 120
Csp6I GTAC 2 cut(s) 9, 163
CspAI ACCGGT 1 cut(s) 120
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 3 cut(s) 146, 228, 408
DinI GGCGCC 1 cut(s) 48
DpnI GATC 3 cut(s) 155, 188, 246
DpnII GATC 3 cut(s) 153, 186, 244
Eam1104I CTCTTC 2 cut(s) 164, 341
EarI CTCTTC 2 cut(s) 164, 341
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 69, 366
Eco24I GRGCYC 1 cut(s) 183
Eco47III AGCGCT 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 69, 366
EcoT38I GRGCYC 1 cut(s) 183
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 69, 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
FspBI CTAG 1 cut(s) 384
GlaI GCGC 4 cut(s) 48, 144, 265, 276
GluI GCNGC 5 cut(s) 59, 75, 262, 273, 288
HaeII RGCGCY 4 cut(s) 50, 146, 267, 278
HaeIII GGCC 1 cut(s) 130
HapII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HhaI GCGC 4 cut(s) 49, 145, 266, 277
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 4 cut(s) 47, 143, 264, 275
HinP1I GCGC 4 cut(s) 47, 143, 264, 275
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 3 cut(s) 252, 325, 390
HpaII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 251, 395
Hpy188III TCNNGA 7 cut(s) 157, 184, 205, 230, 238, 256, 281
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
HpyF3I CTNAG 3 cut(s) 146, 228, 408
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 4 cut(s) 47, 143, 264, 275
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 153, 186, 244
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 3 cut(s) 94, 178, 186
Lsp1109I GCAGC 3 cut(s) 61, 70, 273
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 155, 188, 246
MbiI CCGCTC 1 cut(s) 23
MboI GATC 3 cut(s) 153, 186, 244
MboII GAAGA 3 cut(s) 121, 181, 358
MhlI GDGCHC 2 cut(s) 176, 183
Mly113I GGCGCC 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
MspR9I CCNGG 2 cut(s) 79, 132
MwoI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 2 cut(s) 79, 132
NdeII GATC 3 cut(s) 153, 186, 244
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 48, 90
NmeAIII GCCGAG 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 3 cut(s) 252, 325, 390
PinAI ACCGGT 1 cut(s) 120
PkrI GCNGC 5 cut(s) 60, 76, 263, 274, 289
PluTI GGCGCC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 48, 90
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Sau3AI GATC 3 cut(s) 153, 186, 244
ScrFI CCNGG 2 cut(s) 79, 132
SduI GDGCHC 2 cut(s) 176, 183
SetI ASST 4 cut(s) 63, 183, 198, 381
SfoI GGCGCC 1 cut(s) 48
SsiI CCGC 5 cut(s) 21, 190, 272, 287, 290
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 1 cut(s) 384
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 77, 130
StyI CCWWGG 2 cut(s) 69, 366
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 315
TauI GCSGC 2 cut(s) 275, 290
TfiI GAWTC 3 cut(s) 252, 325, 390
TseI GCWGC 3 cut(s) 58, 74, 261
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 189, 191
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.