Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Forward (+)

32627879 .. 32628607

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCATATGGGCCGGTTTCTTTATGCGGCAAGGCGAAGAAGATAAATCAGCGAGGGAGAGGAAGGCTCGATGATGGAGTACATGAATGCTTTGATTGGCTCAATACTAAGGAACCCAATTCGGTTGTTTATATATGTTTTGGAAGCCTTACCAATTTCGGTGATGCTCGGCTTGTAGAAATTGCCTTGGCTCTTGAGTCTTCTCATCGCAATTCATTTGGGTTGTCGGGAAAGAAAAGAATGATAAAGGAGAGTGGTTGTCCGATGAAGGATTTGAGCAGAGGAGTGGGCTGCCGGGGTGCCAATGATCACCGGCCGGTGTCCTCGGAGCAGTTCTACAATGAGAAGTTGTTTGAAGAGCCAAGCCGCATGCAAATGGAGGCCATAGAGAAGGTCATGATCGAAATCATGGTGGGTGATGAAGCGAGAGGAAATGAGAAGCGAGTTAAAGAGCTTGGAGAGATAGGAAGCAAGACTGTTGAAGAAGGTGGTTCATTGTTCTCCGATTTAACTGCTCTAATTGAAGAGTTGAGGTCCCTTGGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

182

Amino Acids

20.15

Weight (kDa)

6.0

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	2 cut(s)	27, 367
AcoI	YGGCCR	1 cut(s)	314
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	356, 482, 524
AluBI	AGCT	1 cut(s)	454
AluI	AGCT	1 cut(s)	454
AoxI	GGCC	3 cut(s)	11, 314, 381
ApeKI	GCWGC	1 cut(s)	291
AspS9I	GGNCC	3 cut(s)	11, 534, 543
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	173, 302, 428
AvaII	GGWCC	2 cut(s)	534, 543
BanI	GGYRCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BclI	TGATCA	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	296
BisI	GCNGC	3 cut(s)	28, 292, 367
BlsI	GCNGC	3 cut(s)	29, 293, 368
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	534, 543
BmgT120I	GGNCC	3 cut(s)	11, 534, 543
BmiI	GGNNCC	4 cut(s)	114, 301, 536, 544
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	404
BsaJI	CCNNGG	4 cut(s)	186, 295, 324, 538
Bse118I	RCCGGY	3 cut(s)	13, 312, 316
Bse8I	GATNNNNATC	1 cut(s)	404
BseDI	CCNNGG	4 cut(s)	186, 295, 324, 538
BseJI	GATNNNNATC	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	297
BseX3I	CGGCCG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	13, 316, 383
BshNI	GGYRCC	1 cut(s)	299
BsiEI	CGRYCG	1 cut(s)	317
BsiSI	CCGG	4 cut(s)	14, 295, 313, 317
BslFI	GGGAC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	13, 316, 383
Bsp143I	GATC	2 cut(s)	307, 399
BspACI	CCGC	2 cut(s)	27, 367
BspANI	GGCC	3 cut(s)	13, 316, 383
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	4 cut(s)	114, 301, 536, 544
BspQI	GCTCTTC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	299
BsrFI	RCCGGY	3 cut(s)	13, 312, 316
BssAI	RCCGGY	3 cut(s)	13, 312, 316
BssECI	CCNNGG	4 cut(s)	186, 295, 324, 538
BssMI	GATC	2 cut(s)	307, 399
BssT1I	CCWWGG	2 cut(s)	186, 538
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	2 cut(s)	351, 519
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	310, 402
BstMBI	GATC	2 cut(s)	307, 399
BstMCI	CGRYCG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	13, 316, 383
BtgZI	GCGATG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	371
CciI	TCATGA	1 cut(s)	396
Cfr10I	RCCGGY	3 cut(s)	13, 312, 316
Cfr13I	GGNCC	3 cut(s)	11, 534, 543
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	4 cut(s)	83, 370, 397, 409
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	309, 401
DpnII	GATC	2 cut(s)	307, 399
EaeI	YGGCCR	1 cut(s)	314
EagI	CGGCCG	1 cut(s)	314
Eam1104I	CTCTTC	2 cut(s)	351, 519
EarI	CTCTTC	2 cut(s)	351, 519
EclXI	CGGCCG	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	186, 538
Eco47I	GGWCC	2 cut(s)	534, 543
Eco52I	CGGCCG	1 cut(s)	314
EcoO109I	RGGNCCY	2 cut(s)	534, 543
EcoT14I	CCWWGG	2 cut(s)	186, 538
ErhI	CCWWGG	2 cut(s)	186, 538
FaeI	CATG	4 cut(s)	86, 373, 400, 412
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	4 cut(s)	82, 369, 396, 408
FauNDI	CATATG	1 cut(s)	7
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	28, 292, 367
Fsp4HI	GCNGC	3 cut(s)	28, 292, 367
GluI	GCNGC	3 cut(s)	28, 292, 367
HaeIII	GGCC	3 cut(s)	13, 316, 383
HapII	CCGG	4 cut(s)	14, 295, 313, 317
Hin1II	CATG	4 cut(s)	86, 373, 400, 412
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	4 cut(s)	14, 295, 313, 317
HphI	GGTGA	3 cut(s)	173, 302, 428
Hpy188I	TCNGA	3 cut(s)	264, 328, 505
Hpy188III	TCNNGA	3 cut(s)	194, 228, 397
HpyAV	CCTTC	4 cut(s)	57, 262, 385, 479
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	1 cut(s)	373
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	86, 373, 400, 412
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	307, 399
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	4 cut(s)	27, 308, 326, 330
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	154
MalI	GATC	2 cut(s)	309, 401
MboI	GATC	2 cut(s)	307, 399
MboII	GAAGA	6 cut(s)	49, 52, 192, 368, 494, 536
MluCI	AATT	5 cut(s)	118, 154, 180, 211, 519
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	47, 53, 275, 334, 373, 422, 525
MseI	TTAA	2 cut(s)	447, 509
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	4 cut(s)	14, 295, 313, 317
MspR9I	CCNGG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	92
NciI	CCSGG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	2 cut(s)	307, 399
NlaIII	CATG	4 cut(s)	86, 373, 400, 412
NlaIV	GGNNCC	4 cut(s)	114, 301, 536, 544
NmeAIII	GCCGAG	1 cut(s)	148
NspI	RCATGY	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	373
PagI	TCATGA	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	351
PctI	GAATGC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	29, 293, 368
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	2 cut(s)	534, 543
Psp5II	RGGWCCY	2 cut(s)	534, 543
PspN4I	GGNNCC	4 cut(s)	114, 301, 536, 544
PspPI	GGNCC	3 cut(s)	11, 534, 543
PspPPI	RGGWCCY	2 cut(s)	534, 543
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	447, 509
SatI	GCNGC	3 cut(s)	28, 292, 367
Sau3AI	GATC	2 cut(s)	307, 399
Sau96I	GGNCC	3 cut(s)	11, 534, 543
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	5 cut(s)	396, 456, 490, 536, 548
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	2 cut(s)	534, 543
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	5 cut(s)	118, 154, 180, 211, 519
SsiI	CCGC	2 cut(s)	27, 367
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	186, 538
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	69, 402
TasI	AATT	5 cut(s)	118, 154, 180, 211, 519
TatI	WGTACW	1 cut(s)	79
TauI	GCSGC	2 cut(s)	30, 369
Tru1I	TTAA	2 cut(s)	447, 509
Tru9I	TTAA	2 cut(s)	447, 509
TseI	GCWGC	1 cut(s)	291
TspDTI	ATGAA	5 cut(s)	99, 204, 281, 435, 483
VpaK11BI	GGWCC	2 cut(s)	534, 543
XceI	RCATGY	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.