Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011315.1

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Reverse (-)

20815 .. 21513

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011315.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgagaggctgggctccccaactactaattcttgaacatgaagcaactggggcctttgtcactcattgtgggtggaactcgatccttgaaggagtgtctgctggggttccaatgatcacgtggccggtgtccggagagcagttttacaatgagaagctggtgactgagttacttaggattggggttgccgttgcagaggaaatgagaagcagagctaaagcgcttagagagatagcaagcagggctgttgaagaaggtggttcatcataccgcgatttaactgctctaattgaattgtcccttaggattggggttgccgttggtgctggaaagtgggctacatttgaggaggaaagtgtgaagagggaggccatagagaaggctgtcgctgaaatcatggtgggtgatgaagcagaggaaatgagaagcagagctaaagcgcatagagagatagcaagcagggctgttgaagaaggtggttcatcataccgcgatttaactgctctaattgaagagttaaagtcccaagtcccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

178

Amino Acids

19.5

Weight (kDa)

5.07

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	273, 492
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	2 cut(s)	271, 490
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	120
AfeI	AGCGCT	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	6 cut(s)	35, 89, 251, 293, 470, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	3 cut(s)	157, 215, 434
AluI	AGCT	3 cut(s)	157, 215, 434
AlwI	GGATC	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	131
Aor51HI	AGCGCT	1 cut(s)	222
AoxI	GGCC	3 cut(s)	51, 122, 369
AspLEI	GCGC	2 cut(s)	223, 442
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	172, 416
AxyI	CCTNAGG	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	16
BbrPI	CACGTG	1 cut(s)	120
BceAI	ACGGC	2 cut(s)	173, 302
BcgI	CGANNNNNNTGC	4 cut(s)	263, 297, 482, 516
BclI	TGATCA	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	3 cut(s)	15, 52, 108
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	362
BseYI	CCCAGC	2 cut(s)	9, 101
Bsh1236I	CGCG	2 cut(s)	273, 492
BshFI	GGCC	3 cut(s)	53, 124, 371
BsiSI	CCGG	2 cut(s)	125, 132
BslFI	GGGAC	3 cut(s)	283, 508, 515
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmFI	GGGAC	3 cut(s)	283, 508, 515
BsnI	GGCC	3 cut(s)	53, 124, 371
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	81, 114
BspACI	CCGC	2 cut(s)	271, 490
BspANI	GGCC	3 cut(s)	53, 124, 371
BspCNI	CTCAG	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	131
BspFNI	CGCG	2 cut(s)	273, 492
BspLI	GGNNCC	3 cut(s)	15, 52, 108
BspPI	GGATC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	124
BssMI	GATC	2 cut(s)	81, 114
Bst6I	CTCTTC	2 cut(s)	356, 507
BstBAI	YACGTR	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	238, 457
BstDEI	CTNAG	5 cut(s)	165, 173, 224, 302, 534
BstFNI	CGCG	2 cut(s)	273, 492
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	223, 442
BstKTI	GATC	2 cut(s)	84, 117
BstMBI	GATC	2 cut(s)	81, 114
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 242, 323, 461
BstUI	CGCG	2 cut(s)	273, 492
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	53, 124, 371
Cac8I	GCNNGC	2 cut(s)	238, 457
CfoI	GCGC	2 cut(s)	223, 442
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	51
CviAII	CATG	2 cut(s)	38, 397
DdeI	CTNAG	5 cut(s)	165, 173, 224, 302, 534
DpnI	GATC	2 cut(s)	83, 116
DpnII	GATC	2 cut(s)	81, 114
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	2 cut(s)	356, 507
EarI	CTCTTC	2 cut(s)	356, 507
Eco24I	GRGCYC	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	16
FaeI	CATG	2 cut(s)	41, 400
FaiI	YATR	6 cut(s)	39, 268, 374, 398, 444, 487
FaqI	GGGAC	3 cut(s)	283, 508, 515
FatI	CATG	2 cut(s)	37, 396
FbaI	TGATCA	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	16
GlaI	GCGC	2 cut(s)	222, 441
GsaI	CCCAGC	2 cut(s)	13, 105
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	53, 124, 371
HapII	CCGG	2 cut(s)	125, 132
HhaI	GCGC	2 cut(s)	223, 442
Hin1II	CATG	2 cut(s)	41, 400
Hin6I	GCGC	2 cut(s)	221, 440
HinP1I	GCGC	2 cut(s)	221, 440
HpaII	CCGG	2 cut(s)	125, 132
HphI	GGTGA	2 cut(s)	172, 416
Hpy188III	TCNNGA	2 cut(s)	32, 132
HpyAV	CCTTC	4 cut(s)	83, 248, 373, 467
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 242, 323, 461
HpyF3I	CTNAG	5 cut(s)	165, 173, 224, 302, 534
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	41, 400
HspAI	GCGC	2 cut(s)	221, 440
Kpn2I	TCCGGA	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	81, 114
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	8 cut(s)	33, 87, 138, 143, 145, 226, 312, 445
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	3 cut(s)	58, 160, 168
MalI	GATC	2 cut(s)	83, 116
MboI	GATC	2 cut(s)	81, 114
MboII	GAAGA	4 cut(s)	263, 373, 482, 524
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	4 cut(s)	27, 288, 293, 507
MnlI	CCTC	6 cut(s)	190, 340, 343, 357, 361, 409
MroI	TCCGGA	1 cut(s)	131
MseI	TTAA	3 cut(s)	278, 497, 518
MspI	CCGG	2 cut(s)	125, 132
MvnI	CGCG	2 cut(s)	273, 492
MwoI	GCNNNNNNNGC	4 cut(s)	50, 242, 323, 461
NdeII	GATC	2 cut(s)	81, 114
NlaIII	CATG	2 cut(s)	41, 400
NlaIV	GGNNCC	3 cut(s)	15, 52, 108
NmuCI	GTSAC	2 cut(s)	58, 160
PmaCI	CACGTG	1 cut(s)	120
PmlI	CACGTG	1 cut(s)	120
Ppu21I	YACGTR	1 cut(s)	120
PspCI	CACGTG	1 cut(s)	120
PspFI	CCCAGC	2 cut(s)	9, 101
PspN4I	GGNNCC	3 cut(s)	15, 52, 108
PspPI	GGNCC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	278, 497, 518
Sau3AI	GATC	2 cut(s)	81, 114
Sau96I	GGNCC	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	122, 159, 217, 259, 436, 478
Sse9I	AATT	4 cut(s)	27, 288, 293, 507
SsiI	CCGC	2 cut(s)	271, 490
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	80
TasI	AATT	4 cut(s)	27, 288, 293, 507
Tru1I	TTAA	3 cut(s)	278, 497, 518
Tru9I	TTAA	3 cut(s)	278, 497, 518
TseFI	GTSAC	2 cut(s)	58, 160
Tsp45I	GTSAC	2 cut(s)	58, 160
TspDTI	ATGAA	4 cut(s)	54, 252, 423, 471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.