Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001425.1

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Forward (+)

31184 .. 32598

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001425.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgggtctaggccacagtttacccctcttagacattgccaaactatttgcgtcacgtggtgtaaaatcctccataataaccacccctgttagtgctgcacttctctccaaacaactccgaacaagcaaaagtttgggttctggaattgaatttcttgtcatcaaattcccatcggctgaagtagggttatctgaagatgctgtatttcattgggctatagatgttgctgccaagtttgggattctgaggctcgtctttcatggagctgattttttccccgttgtgtgcttcattgagtgtgatgttgtaccaacctcacatgaagcttctacgaacttaaaccataatatgcaaatcactataggaaggtgtttgggaggaagtcatggcatatcggccctgtttatttatgcaacaaggcagaagaagataaatcagcgaggggagaggaaggctctgctgatgggtgatgctctgcttgtagaaattgccctggaacttgagtcttctcatcagcaattcatttgggttgtcaagaaagaaaagaatgataaaggagagtggttgcctaatgaaggatttgagcagaggttagaagataagggactaataataagaggctgggctccccaactactaattcttgaacatgaagcagttggggcctttatgactcattgtggttggaactctatccttaaaggagtggctgctggggtgccaatgatcacctggctagtgtctgcagaacaattctacaatgagaaattggtgactcagttgcttgggattggggttgctgttggggctgaaaagtgggatacatttgaggatgatagtctgaagagtgaagccagcatgaagatggaggccatagagaaggctgtgactgaaatcatggtgggtgatgaagcagaggaaatgagaagcagagttaaagagcttggagagatcgaaagcaaggctgttgaagaaggcggttcatcgttctccgatttaactgctcttatagaagagttgaggttccttgggacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

345

Amino Acids

37.86

Weight (kDa)

5.25

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	718
AciI	CCGC	1 cut(s)	978
AcsI	RAATTY	2 cut(s)	149, 164
AcuI	CTGAAG	3 cut(s)	198, 213, 863
AcvI	CACGTG	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	237, 575
AgsI	TTSAA	3 cut(s)	149, 647, 971
AjnI	CCWGG	2 cut(s)	492, 731
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	3 cut(s)	266, 326, 943
AluI	AGCT	3 cut(s)	266, 326, 943
AoxI	GGCC	4 cut(s)	10, 396, 663, 870
ApeKI	GCWGC	3 cut(s)	95, 227, 710
ApoI	RAATTY	2 cut(s)	149, 164
AspS9I	GGNCC	3 cut(s)	397, 663, 1032
AsuHPI	GGTGA	4 cut(s)	479, 721, 784, 917
AvaII	GGWCC	1 cut(s)	1032
BanI	GGYRCC	1 cut(s)	718
BanII	GRGCYC	1 cut(s)	628
BbrPI	CACGTG	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	82, 214, 697
BccI	CCATC	3 cut(s)	178, 457, 859
BcgI	CGANNNNNNTGC	2 cut(s)	983, 1017
BciT130I	CCWGG	2 cut(s)	494, 733
BciVI	GTATCC	1 cut(s)	814
BclI	TGATCA	1 cut(s)	726
BfaI	CTAG	2 cut(s)	8, 737
BfmI	CTRYAG	3 cut(s)	216, 360, 744
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	3 cut(s)	96, 228, 711
BlsI	GCNGC	3 cut(s)	97, 229, 712
Bme1390I	CCNGG	2 cut(s)	494, 733
Bme18I	GGWCC	1 cut(s)	1032
BmgT120I	GGNCC	3 cut(s)	397, 663, 1032
BmiI	GGNNCC	5 cut(s)	627, 664, 720, 1025, 1033
BmrFI	CCNGG	2 cut(s)	494, 733
BmsI	GCATC	2 cut(s)	187, 460
BpiI	GAAGAC	1 cut(s)	498
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpuEI	CTTGAG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	492, 1027
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 575
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	494, 733
BseDI	CCNNGG	2 cut(s)	492, 1027
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	2 cut(s)	237, 575
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	236, 791
BseXI	GCAGC	3 cut(s)	82, 214, 697
BseYI	CCCAGC	2 cut(s)	621, 713
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	4 cut(s)	12, 398, 665, 872
BshNI	GGYRCC	1 cut(s)	718
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	2 cut(s)	237, 575
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	4 cut(s)	12, 398, 665, 872
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	2 cut(s)	726, 951
BspACI	CCGC	1 cut(s)	978
BspANI	GGCC	4 cut(s)	12, 398, 665, 872
BspCNI	CTCAG	2 cut(s)	237, 790
BspLI	GGNNCC	5 cut(s)	627, 664, 720, 1025, 1033
BspMAI	CTGCAG	1 cut(s)	748
BspT107I	GGYRCC	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	492, 1027
BssMI	GATC	2 cut(s)	726, 951
BssT1I	CCWWGG	1 cut(s)	1027
Bst2UI	CCWGG	2 cut(s)	494, 733
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	839, 1008
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	856
BstDEI	CTNAG	3 cut(s)	28, 245, 777
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	838
BstKTI	GATC	2 cut(s)	729, 954
BstMBI	GATC	2 cut(s)	726, 951
BstMWI	GCNNNNNNNGC	2 cut(s)	662, 806
BstNI	CCWGG	2 cut(s)	494, 733
BstSCI	CCNGG	2 cut(s)	492, 731
BstSFI	CTRYAG	3 cut(s)	216, 360, 744
BstV1I	GCAGC	3 cut(s)	82, 214, 697
BstV2I	GAAGAC	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	4 cut(s)	12, 398, 665, 872
BtsCI	GGATG	1 cut(s)	838
Cac8I	GCNNGC	1 cut(s)	856
Cfr13I	GGNCC	3 cut(s)	397, 663, 1032
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	6 cut(s)	260, 320, 386, 650, 859, 898
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	3 cut(s)	28, 245, 777
DpnI	GATC	2 cut(s)	728, 953
DpnII	GATC	2 cut(s)	726, 951
DraIII	CACNNNGTG	1 cut(s)	59
Eam1104I	CTCTTC	2 cut(s)	839, 1008
EarI	CTCTTC	2 cut(s)	839, 1008
Eco130I	CCWWGG	1 cut(s)	1027
Eco24I	GRGCYC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	1032
Eco57I	CTGAAG	3 cut(s)	198, 213, 863
Eco72I	CACGTG	1 cut(s)	56
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoO109I	RGGNCCY	2 cut(s)	663, 1032
EcoRII	CCWGG	2 cut(s)	492, 731
EcoT14I	CCWWGG	1 cut(s)	1027
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	1027
FaeI	CATG	6 cut(s)	263, 323, 389, 653, 862, 901
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	6 cut(s)	259, 319, 385, 649, 858, 897
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	96, 228, 711
FokI	GGATG	1 cut(s)	845
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	3 cut(s)	96, 228, 711
FspBI	CTAG	2 cut(s)	8, 737
GluI	GCNGC	3 cut(s)	96, 228, 711
GsaI	CCCAGC	2 cut(s)	625, 717
HaeIII	GGCC	4 cut(s)	12, 398, 665, 872
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	263, 323, 389, 653, 862, 901
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	4 cut(s)	241, 503, 673, 775
HphI	GGTGA	4 cut(s)	479, 721, 784, 917
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	5 cut(s)	119, 193, 246, 843, 994
Hpy188III	TCNNGA	3 cut(s)	141, 535, 644
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	5 cut(s)	360, 445, 569, 874, 968
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	98, 352, 413, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	662, 806
HpyF3I	CTNAG	3 cut(s)	28, 245, 777
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	6 cut(s)	263, 323, 389, 653, 862, 901
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	2 cut(s)	726, 951
LmnI	GCTCC	2 cut(s)	263, 631
Lsp1109I	GCAGC	3 cut(s)	82, 214, 697
LweI	GCATC	2 cut(s)	187, 460
MaeI	CTAG	2 cut(s)	8, 737
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	3 cut(s)	51, 772, 886
MalI	GATC	2 cut(s)	728, 953
MboI	GATC	2 cut(s)	726, 951
MboII	GAAGA	9 cut(s)	206, 436, 439, 498, 608, 856, 874, 983, 1025
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	8 cut(s)	144, 149, 164, 486, 518, 639, 752, 767
MlyI	GAGTC	3 cut(s)	512, 667, 769
MmeI	TCCRAC	1 cut(s)	665
MseI	TTAA	4 cut(s)	338, 699, 936, 998
MslI	CAYNNNNRTG	1 cut(s)	863
MspR9I	CCNGG	2 cut(s)	494, 733
MvaI	CCWGG	2 cut(s)	494, 733
MwoI	GCNNNNNNNGC	2 cut(s)	662, 806
NdeII	GATC	2 cut(s)	726, 951
NlaIII	CATG	6 cut(s)	263, 323, 389, 653, 862, 901
NlaIV	GGNNCC	5 cut(s)	627, 664, 720, 1025, 1033
NmuCI	GTSAC	3 cut(s)	51, 772, 886
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	97, 229, 712
PleI	GAGTC	3 cut(s)	511, 667, 769
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
PpsI	GAGTC	3 cut(s)	511, 667, 769
Ppu21I	YACGTR	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	1032
Psp5II	RGGWCCY	1 cut(s)	1032
Psp6I	CCWGG	2 cut(s)	492, 731
PspCI	CACGTG	1 cut(s)	56
PspFI	CCCAGC	2 cut(s)	621, 713
PspGI	CCWGG	2 cut(s)	492, 731
PspN4I	GGNNCC	5 cut(s)	627, 664, 720, 1025, 1033
PspPI	GGNCC	3 cut(s)	397, 663, 1032
PspPPI	RGGWCCY	1 cut(s)	1032
PstI	CTGCAG	1 cut(s)	748
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	863
SaqAI	TTAA	4 cut(s)	338, 699, 936, 998
SatI	GCNGC	3 cut(s)	96, 228, 711
Sau3AI	GATC	2 cut(s)	726, 951
Sau96I	GGNCC	3 cut(s)	397, 663, 1032
SchI	GAGTC	3 cut(s)	512, 667, 769
ScrFI	CCNGG	2 cut(s)	494, 733
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	187, 460
SfcI	CTRYAG	3 cut(s)	216, 360, 744
SinI	GGWCC	1 cut(s)	1032
SmiMI	CAYNNNNRTG	1 cut(s)	863
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	8 cut(s)	144, 149, 164, 486, 518, 639, 752, 767
SsiI	CCGC	1 cut(s)	978
SspMI	CTAG	2 cut(s)	8, 737
StyD4I	CCNGG	2 cut(s)	492, 731
StyI	CCWWGG	1 cut(s)	1027
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	954
TasI	AATT	8 cut(s)	144, 149, 164, 486, 518, 639, 752, 767
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	4 cut(s)	338, 699, 936, 998
Tru9I	TTAA	4 cut(s)	338, 699, 936, 998
TseFI	GTSAC	3 cut(s)	51, 772, 886
TseI	GCWGC	3 cut(s)	95, 227, 710
Tsp45I	GTSAC	3 cut(s)	51, 772, 886
VpaK11BI	GGWCC	1 cut(s)	1032
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	2 cut(s)	149, 164
XcmI	CCANNNNNNNNNTGG	2 cut(s)	729, 862
XspI	CTAG	2 cut(s)	8, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.