Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006957

Physical Location & Seq

Genomic Coordinates Reverse (-)

75442321 .. 75445554

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0562900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAACTTATTCCTACTTCTACAAGAGATATTTCAAGGTTTTCCCATTCCAAATGAAGAAAGGAATCTAAATCCAAGTTTTACAAGGAAACATGAAGCCAAAGATGAGCAGAAATCTTCCCTATATAAGGAAGCACGAATTTACATGAGAGAAGAGTCTCAGAGCACAATGATCCCATTAAATTTGGATCCTCCAGTCGGATCTCGCACCGGTCCTTGCACGACCTTTTCCGCTCTCGACGAGCTTCTCGTCGCTGCTGGCTGCATCACTGACTTTGATGAGTACCGCTCGGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATGGTAGGAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCACTGGAGGCGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGACTTTGTTCTGTAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGCGGCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

244

Amino Acids

28.15

Weight (kDa)

5.43

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006957)

Species	Orthologous Gene IDs
malus_domestica	MD05G1091600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0256091 RchiOBHm_Chr6g0256181 RchiOBHm_Chr6g0256281 RchiOBHm_Chr6g0256491 RchiOBHm_Chr6g0257741
rosa_laevigata	RLG00000013347 RLG00000013350 RLG00000013353 RLG00000014801 RLG00000015131
rosa_multiflora	Rmu_sc0001425.1_g000009 Rmu_sc0001425.1_g000017 Rmu_sc0001896.1_g000016 Rmu_sc0001896.1_g000036 Rmu_sc0001896.1_g000038 Rmu_sc0003882.1_g000011 Rmu_sc0004961.1_g000013 Rmu_sc0011315.1_g000008
rosa_roxburghii	Rroxscaffold_2G00108560
rosa_rugosa	Rorug04G0081600 Rorug05G0562700 Rorug05G0562900 Rorug05G0563200 Rorug05G0563900 Rorug06G0169300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccBSI	CCGCTC	2 cut(s)	233, 288
AciI	CCGC	3 cut(s)	231, 286, 724
AclWI	GGATC	4 cut(s)	166, 182, 195, 208
AcsI	RAATTY	5 cut(s)	138, 181, 493, 544, 594
AfaI	GTAC	2 cut(s)	284, 407
AfiI	CCNNNNNNNGG	3 cut(s)	127, 197, 514
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	35, 505
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	3 cut(s)	244, 367, 441
AluI	AGCT	3 cut(s)	244, 367, 441
Alw21I	GWGCWC	2 cut(s)	167, 396
Alw26I	GTCTC	2 cut(s)	162, 344
Alw44I	GTGCAC	1 cut(s)	392
AlwI	GGATC	4 cut(s)	166, 182, 195, 208
AlwNI	CAGNNNCTG	1 cut(s)	664
ApaLI	GTGCAC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	254, 261
ApoI	RAATTY	5 cut(s)	138, 181, 493, 544, 594
AsiGI	ACCGGT	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	212, 583
AsuHPI	GGTGA	2 cut(s)	328, 389
AvaII	GGWCC	2 cut(s)	212, 583
BaeGI	GKGCMC	1 cut(s)	396
BamHI	GGATCC	1 cut(s)	187
Bbv12I	GWGCWC	2 cut(s)	167, 396
BbvI	GCAGC	2 cut(s)	241, 248
BccI	CCATC	4 cut(s)	351, 443, 476, 537
BceAI	ACGGC	1 cut(s)	646
BclI	TGATCA	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	162, 344
BisI	GCNGC	3 cut(s)	255, 262, 725
BlsI	GCNGC	3 cut(s)	256, 263, 726
BmcAI	AGTACT	1 cut(s)	407
Bme18I	GGWCC	2 cut(s)	212, 583
BmgT120I	GGNCC	2 cut(s)	212, 583
BmiI	GGNNCC	2 cut(s)	189, 585
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	2 cut(s)	273, 651
BmuI	ACTGGG	1 cut(s)	714
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	2 cut(s)	177, 536
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	549, 685
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 197, 514
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	3 cut(s)	194, 519, 709
BseDI	CCNNGG	2 cut(s)	549, 685
BseGI	GGATG	4 cut(s)	298, 406, 454, 524
BseLI	CCNNNNNNNGG	3 cut(s)	127, 197, 514
BseMII	CTCAG	2 cut(s)	173, 382
BseNI	ACTGG	3 cut(s)	194, 519, 709
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	241, 248
BshTI	ACCGGT	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	167, 396
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	3 cut(s)	127, 197, 514
BsmAI	GTCTC	2 cut(s)	162, 344
BsmFI	GGGAC	1 cut(s)	628
Bso31I	GGTCTC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	167, 396
Bsp143I	GATC	6 cut(s)	171, 187, 200, 379, 418, 570
Bsp19I	CCATGG	1 cut(s)	685
BspACI	CCGC	3 cut(s)	231, 286, 724
BspCNI	CTCAG	2 cut(s)	172, 381
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	189, 585
BspPI	GGATC	4 cut(s)	166, 182, 195, 208
BspTNI	GGTCTC	1 cut(s)	344
BsrBI	CCGCTC	2 cut(s)	233, 288
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	194, 519, 709
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	549, 685
BssMI	GATC	6 cut(s)	171, 187, 200, 379, 418, 570
BssT1I	CCWWGG	2 cut(s)	549, 685
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	159, 368
BstDSI	CCRYGG	1 cut(s)	685
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	4 cut(s)	298, 406, 454, 524
BstKTI	GATC	6 cut(s)	174, 190, 203, 382, 421, 573
BstMAI	GTCTC	2 cut(s)	162, 344
BstMBI	GATC	6 cut(s)	171, 187, 200, 379, 418, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 661
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	241, 248
BstX2I	RGATCY	2 cut(s)	187, 200
BstYI	RGATCY	2 cut(s)	187, 200
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	4 cut(s)	298, 406, 454, 524
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	4 cut(s)	267, 512, 573, 702
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	664
CciI	TCATGA	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	212, 583
Csp6I	GTAC	2 cut(s)	283, 406
CspAI	ACCGGT	1 cut(s)	209
CspCI	CAANNNNNGTGG	2 cut(s)	633, 668
CviAII	CATG	6 cut(s)	92, 145, 509, 536, 686, 710
CviJI	RGCY	5 cut(s)	98, 244, 261, 367, 441
CviKI_1	RGCY	5 cut(s)	98, 244, 261, 367, 441
CviQI	GTAC	2 cut(s)	283, 406
DdeI	CTNAG	2 cut(s)	159, 368
DpnI	GATC	6 cut(s)	173, 189, 202, 381, 420, 572
DpnII	GATC	6 cut(s)	171, 187, 200, 379, 418, 570
DraI	TTTAAA	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	549, 685
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	2 cut(s)	212, 583
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	583
EcoT14I	CCWWGG	2 cut(s)	549, 685
ErhI	CCWWGG	2 cut(s)	549, 685
FaeI	CATG	6 cut(s)	95, 148, 512, 539, 689, 713
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	6 cut(s)	91, 144, 508, 535, 685, 709
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	3 cut(s)	255, 262, 725
FokI	GGATG	4 cut(s)	305, 413, 461, 511
Fsp4HI	GCNGC	3 cut(s)	255, 262, 725
GluI	GCNGC	3 cut(s)	255, 262, 725
GsuI	CTGGAG	2 cut(s)	177, 536
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	6 cut(s)	95, 148, 512, 539, 689, 713
HinfI	GANTC	2 cut(s)	64, 155
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	328, 389
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	4 cut(s)	162, 200, 292, 371
Hpy188III	TCNNGA	2 cut(s)	236, 536
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	2 cut(s)	242, 254
HpyCH4V	TGCA	5 cut(s)	219, 264, 394, 512, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 661
HpyF3I	CTNAG	2 cut(s)	159, 368
Hsp92II	CATG	6 cut(s)	95, 148, 512, 539, 689, 713
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	6 cut(s)	171, 187, 200, 379, 418, 570
LpnPI	CCDG	6 cut(s)	207, 223, 243, 367, 500, 690
Lsp1109I	GCAGC	2 cut(s)	241, 248
LweI	GCATC	2 cut(s)	273, 651
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	6 cut(s)	173, 189, 202, 381, 420, 572
MbiI	CCGCTC	2 cut(s)	233, 288
MboI	GATC	6 cut(s)	171, 187, 200, 379, 418, 570
MboII	GAAGA	5 cut(s)	68, 108, 164, 373, 524
MflI	RGATCY	2 cut(s)	187, 200
MhlI	GDGCHC	2 cut(s)	167, 396
MluCI	AATT	7 cut(s)	138, 181, 334, 493, 500, 544, 594
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	201, 292, 439, 511, 574
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	179, 497
MslI	CAYNNNNRTG	3 cut(s)	399, 534, 719
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	518, 661
NcoI	CCATGG	1 cut(s)	685
NdeII	GATC	6 cut(s)	171, 187, 200, 379, 418, 570
NlaIII	CATG	6 cut(s)	95, 148, 512, 539, 689, 713
NlaIV	GGNNCC	2 cut(s)	189, 585
OliI	CACNNNNGTG	1 cut(s)	719
PagI	TCATGA	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	256, 263, 726
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	189, 585
PspPI	GGNCC	2 cut(s)	212, 583
PspPPI	RGGWCCY	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	664
PsuI	RGATCY	2 cut(s)	187, 200
RsaI	GTAC	2 cut(s)	284, 407
RsaNI	GTAC	2 cut(s)	283, 406
RseI	CAYNNNNRTG	3 cut(s)	399, 534, 719
SaqAI	TTAA	2 cut(s)	179, 497
SatI	GCNGC	3 cut(s)	255, 262, 725
Sau3AI	GATC	6 cut(s)	171, 187, 200, 379, 418, 570
Sau96I	GGNCC	2 cut(s)	212, 583
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	2 cut(s)	167, 396
SetI	ASST	8 cut(s)	40, 227, 246, 318, 369, 393, 443, 480
SfaNI	GCATC	2 cut(s)	273, 651
SinI	GGWCC	2 cut(s)	212, 583
SmiMI	CAYNNNNRTG	3 cut(s)	399, 534, 719
Sse9I	AATT	7 cut(s)	138, 181, 334, 493, 500, 544, 594
SsiI	CCGC	3 cut(s)	231, 286, 724
StyI	CCWWGG	2 cut(s)	549, 685
TaqI	TCGA	2 cut(s)	237, 310
TasI	AATT	7 cut(s)	138, 181, 334, 493, 500, 544, 594
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	727
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	179, 497
Tru9I	TTAA	2 cut(s)	179, 497
TscAI	CASTG	4 cut(s)	274, 519, 573, 709
TseI	GCWGC	2 cut(s)	254, 261
TspDTI	ATGAA	9 cut(s)	17, 69, 108, 334, 423, 488, 524, 555, 594
TspRI	CASTG	4 cut(s)	274, 519, 573, 709
Van91I	CCANNNNNTGG	1 cut(s)	514
VneI	GTGCAC	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	212, 583
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	5 cut(s)	138, 181, 493, 544, 594
XmnI	GAANNNNTTC	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.