Rorug05G0563200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006957
Physical Location & Seq
Reverse (-)
75481787 .. 75483644
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0563200.1

Sequence Viewer

Length: 1794 bp
ATGATTCGAACAACTGCTTCTTCTTATTCTCATTGCAGCAGCACCACTACCACAAGATGTATGCCATTTCTTCGCTTGACTCCTCTCGTTCTCTTCGCTGTCAACAACTACTTGGCTTTGTTTCATTCTCAATCCTCAAACCCAACCAAACCCAGAGAAACCCATCTCCATGTTGAGGATGCCTTGAAGGTGTTCGATGAAATGCTTCGCTCGCGTCCTCTGCCTTGTTCTTCTGTTATCCCTTTCAATCAAATCTTGACTCAACTTTCCAAACTCAAACATTACTCAACAGTCATCACTTTGAATAGGCAAATGCGTCTCTGTCGATTTGTTCCTGATGACTACACTCTTAACATTATCATCAACTGCTATTGCCGTTTGAATCGTATGGGCTTTGGCTTATCTGTCTTGGGTCAATTCTTCAAATTGGGTCTTCAACCAGACGTCTTCACCTTCACCACTCTAATCAACGGCTTTATTCTCAAGAATCAAGTGCCTGAGGCCGCACGAATTTTCACCAAAATGATGGAGGCAGGTCATTCTAAGCCGGATGTGGTTACTTTCACCACACTAATAAAGGGCTTTTGCAAGATCGGAAACAACACTGCGGCTGTTCAATTACTCAGGAAGATGGAAGGAGGAGGATGCGAGCCTAACATAGTTTCCTGTAACACCATCATTGACAGTCTTTGCAAGGATACACTTGTTGTAGATGCAATGAACCTCTTCTCAGAAATGATTAGTAGAGGTATTGCTCCGGATGTTGTTACTTACACCTCTTTAATTCATGGAGTTTGCAATATACGCCAGTGGAAACAAGCTACAAGGCTGTTGAATGAAATGTTGAGTCAAGGTATCTTTCCAGATATCTACACCTTCAATGTCTTGGTTGATACACTCTGTAAGGAAGGAATGGTTGTGGAAGCCGAAACTGTGGTTGAGACGATGATTCAAAGAGATATCGAGCCTGATGTCATTACATACAATTCCCTTATGAATGGTTACTGTTTGCGAGGAGAAATGGATGAGGCGAAACAAGTTTTTGATCTGATGGTTAGCAAGGGCTCCTTGGTTAATGTTCAGAGTTTTAGCATATTGATAAACGGATACTGTAAGCAGAAAAAGGTCGGTGAGGCCAATAAGGTTTTTCAGGAAATGACTGATTGGGAGCTTGTTCCTGATACCATTACTTATAACACTCTTATTGATGGTTTTTACAAAGCAGCGAGAATACAAGAGGCAGAAAAGTTGTTCTCTGATATGCAAGGTTGTGGCCAACTTCCAAATGTTCAAACTTATAATATTATAGTTAATGGTCTGTGTAACAACCAACAACTTTCCACAGCACTAGAATTGCTTAGAGAGATGGAAGCCAACAAGTTGGAACTAAATATTGTAGTTTACAATACAATCATTGAAGGTTTGTGCAAAGCTGGGAAAATGGATTCTGCAATAGATGTCTTCTCTGGTTTGTCGTCAAAGCATCTTCAACCAGATACGTGGACGTATAATATAATGATTCTTGGATTTTGTAAAGGAGGCCTATTAAGTGAAGCTGAAAAATTGTTTACAGAAATGAAGGAGAAAGGCTGTACTCCAAATGGCTGTACCTATAACACAATTATCCGAGGTTTTATGAATAACAATGAGACATCAAGGGCTACAGGACTTATTCAAGAAATGCTTGAGAGGGGTTTCTCTGCGGATGCATCAACTATGGACTTGATTGTTGATTTATTGTCAAAGGACACAGTAGATCCTGTATTAGTGGCATGGCTTAAAGATTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

597

Amino Acids

66.91

Weight (kDa)

5.76

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 144 - 175 7e-07 PPR repeat
PPR_2 PF13041 147 - 197 1.5e-13 PPR repeat family
PPR_3 PF13812 182 - 228 2.3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 182 - 212 2e-11 PPR repeat
PPR_2 PF13041 183 - 221 3.4e-10 PPR repeat family
PPR_1 PF12854 215 - 246 9.5e-09 PPR repeat
PPR_2 PF13041 218 - 267 7.6e-18 PPR repeat family
PPR_long PF17177 234 - 332 8.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 242 - 300 1.7e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 249 - 281 2.2e-09 PPR repeat
PPR_2 PF13041 253 - 302 3.4e-17 PPR repeat family
MRP-S27 PF10037 258 - 320 1.3e-07 Mitochondrial 28S ribosomal protein S27
PPR_1 PF12854 285 - 316 2.4e-09 PPR repeat
PPR_2 PF13041 292 - 336 7e-12 PPR repeat family
PPR_3 PF13812 312 - 370 4.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 320 - 352 7.2e-13 PPR repeat
PPR_2 PF13041 323 - 372 1.7e-16 PPR repeat family
PPR PF01535 326 - 355 4.3e-09 PPR repeat
PPR_1 PF12854 354 - 387 3.6e-08 PPR repeat
PPR_2 PF13041 359 - 407 1.3e-15 PPR repeat family
PPR PF01535 362 - 388 7.2e-06 PPR repeat
PPR_3 PF13812 381 - 438 7.1e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 381 - 489 1.8e-09 Fungal tetratrico peptide repeats
PPR_1 PF12854 390 - 422 1.1e-09 PPR repeat
PPR_2 PF13041 393 - 442 9.9e-18 PPR repeat family
PPR PF01535 396 - 425 1.8e-06 PPR repeat
PPR_1 PF12854 425 - 457 1e-09 PPR repeat
PPR_2 PF13041 428 - 465 1.9e-07 PPR repeat family
PPR_3 PF13812 452 - 511 3.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 461 - 488 8.6e-10 PPR repeat
PPR_2 PF13041 464 - 512 2.1e-16 PPR repeat family
PPR_1 PF12854 494 - 527 6e-12 PPR repeat
PPR PF01535 502 - 531 5.8e-10 PPR repeat
PPR_2 PF13041 502 - 545 2.8e-15 PPR repeat family
PPR_3 PF13812 517 - 545 1.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 533 - 580 1e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1194, 1299
AatII GACGTC 1 cut(s) 447
Acc36I ACCTGC 1 cut(s) 524
AccII CGCG 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 757
AciI CCGC 3 cut(s) 504, 608, 1703
AclWI GGATC 1 cut(s) 1751
AcoI YGGCCR 1 cut(s) 1273
AcsI RAATTY 1 cut(s) 510
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 2 cut(s) 1594, 1609
AfiI CCNNNNNNNGG 1 cut(s) 175
AluBI AGCT 4 cut(s) 821, 1171, 1433, 1556
AluI AGCT 4 cut(s) 821, 1171, 1433, 1556
Alw26I GTCTC 3 cut(s) 323, 935, 1643
AlwI GGATC 1 cut(s) 1751
Aor13HI TCCGGA 1 cut(s) 757
AoxI GGCC 4 cut(s) 501, 1134, 1273, 1540
ApeKI GCWGC 3 cut(s) 36, 39, 1223
ApoI RAATTY 1 cut(s) 510
Asp700I GAANNNNTTC 3 cut(s) 191, 204, 725
AsuHPI GGTGA 5 cut(s) 442, 448, 508, 556, 1142
AsuII TTCGAA 1 cut(s) 7
AxyI CCTNAGG 1 cut(s) 498
BaeI ACNNNNGTAYC 2 cut(s) 690, 723
BalI TGGCCA 1 cut(s) 1275
BanII GRGCYC 1 cut(s) 1067
BbsI GAAGAC 3 cut(s) 425, 439, 1453
BbvI GCAGC 3 cut(s) 48, 51, 1235
BccI CCATC 7 cut(s) 171, 520, 625, 683, 1045, 1202, 1360
BceAI ACGGC 2 cut(s) 360, 487
BciVI GTATCC 2 cut(s) 691, 1100
BcoDI GTCTC 3 cut(s) 323, 935, 1643
BfaI CTAG 1 cut(s) 1349
BfmI CTRYAG 1 cut(s) 1662
BfuAI ACCTGC 1 cut(s) 524
BfuI GTATCC 2 cut(s) 691, 1100
BisI GCNGC 5 cut(s) 37, 40, 504, 609, 1224
BlsI GCNGC 5 cut(s) 38, 41, 505, 610, 1225
BmiI GGNNCC 1 cut(s) 1066
BmsI GCATC 6 cut(s) 169, 635, 703, 1492, 1696, 1718
BpiI GAAGAC 3 cut(s) 425, 439, 1453
Bpu14I TTCGAA 1 cut(s) 7
BpuEI CTTGAG 2 cut(s) 467, 1706
BsaAI YACGTR 1 cut(s) 1500
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 1068, 1627
BsaWI WCCGGW 1 cut(s) 757
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 808
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 2 cut(s) 31, 723
BseAI TCCGGA 1 cut(s) 757
BseDI CCNNGG 2 cut(s) 1068, 1627
BseGI GGATG 6 cut(s) 184, 556, 650, 766, 1030, 1711
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 2 cut(s) 31, 723
BseMII CTCAG 3 cut(s) 489, 637, 744
BseNI ACTGG 1 cut(s) 808
BseRI GAGGAG 3 cut(s) 72, 654, 1029
BseXI GCAGC 3 cut(s) 48, 51, 1235
BseYI CCCAGC 1 cut(s) 1433
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 4 cut(s) 503, 1136, 1275, 1542
BsiSI CCGG 2 cut(s) 548, 758
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 3 cut(s) 323, 935, 1643
BsmBI CGTCTC 2 cut(s) 323, 935
BsnI GGCC 4 cut(s) 503, 1136, 1275, 1542
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 1067
Bsp13I TCCGGA 1 cut(s) 757
Bsp143I GATC 3 cut(s) 591, 1045, 1756
BspACI CCGC 3 cut(s) 504, 608, 1703
BspANI GGCC 4 cut(s) 503, 1136, 1275, 1542
BspCNI CTCAG 3 cut(s) 490, 636, 743
BspEI TCCGGA 1 cut(s) 757
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 1066
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 1 cut(s) 1751
BspT104I TTCGAA 1 cut(s) 7
BsrDI GCAATG 2 cut(s) 31, 723
BsrI ACTGG 1 cut(s) 808
BssECI CCNNGG 2 cut(s) 1068, 1627
BssMI GATC 3 cut(s) 591, 1045, 1756
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 1068
Bst4CI ACNGT 6 cut(s) 292, 686, 934, 1007, 1112, 1753
Bst6I CTCTTC 2 cut(s) 98, 731
BstACI GRCGYC 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 1500
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 2 cut(s) 212, 650
BstDEI CTNAG 5 cut(s) 498, 543, 623, 730, 1358
BstF5I GGATG 6 cut(s) 184, 556, 650, 766, 1030, 1711
BstFNI CGCG 1 cut(s) 214
BstKTI GATC 3 cut(s) 594, 1048, 1759
BstMAI GTCTC 3 cut(s) 323, 935, 1643
BstMBI GATC 3 cut(s) 591, 1045, 1756
BstMWI GCNNNNNNNGC 3 cut(s) 211, 220, 804
BstSFI CTRYAG 1 cut(s) 1662
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 48, 51, 1235
BstV2I GAAGAC 3 cut(s) 425, 439, 1453
BstX2I RGATCY 1 cut(s) 1756
BstXI CCANNNNNNTGG 3 cut(s) 526, 1381, 1500
BstYI RGATCY 1 cut(s) 1756
Bsu36I CCTNAGG 1 cut(s) 498
BsuI GTATCC 2 cut(s) 691, 1100
BsuRI GGCC 4 cut(s) 503, 1136, 1275, 1542
BtsCI GGATG 6 cut(s) 184, 556, 650, 766, 1030, 1711
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 2 cut(s) 603, 815
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 2 cut(s) 212, 650
CseI GACGC 2 cut(s) 203, 305
Csp6I GTAC 2 cut(s) 1593, 1608
CviAII CATG 3 cut(s) 170, 788, 1773
CviQI GTAC 2 cut(s) 1593, 1608
DdeI CTNAG 5 cut(s) 498, 543, 623, 730, 1358
DpnI GATC 3 cut(s) 593, 1047, 1758
DpnII GATC 3 cut(s) 591, 1045, 1756
EaeI YGGCCR 1 cut(s) 1273
Eam1104I CTCTTC 2 cut(s) 98, 731
EarI CTCTTC 2 cut(s) 98, 731
Eco130I CCWWGG 1 cut(s) 1068
Eco147I AGGCCT 1 cut(s) 1542
Eco24I GRGCYC 1 cut(s) 1067
Eco32I GATATC 2 cut(s) 868, 961
Eco81I CCTNAGG 1 cut(s) 498
EcoRV GATATC 2 cut(s) 868, 961
EcoT14I CCWWGG 1 cut(s) 1068
EcoT22I ATGCAT 1 cut(s) 1711
EcoT38I GRGCYC 1 cut(s) 1067
ErhI CCWWGG 1 cut(s) 1068
Esp3I CGTCTC 2 cut(s) 323, 935
FaeI CATG 3 cut(s) 173, 791, 1776
FalI AAGNNNNNCTT 4 cut(s) 1052, 1084, 1668, 1700
FatI CATG 3 cut(s) 169, 787, 1772
Fnu4HI GCNGC 5 cut(s) 37, 40, 504, 609, 1224
FokI GGATG 6 cut(s) 191, 563, 657, 773, 1037, 1718
FriOI GRGCYC 1 cut(s) 1067
Fsp4HI GCNGC 5 cut(s) 37, 40, 504, 609, 1224
FspBI CTAG 1 cut(s) 1349
GluI GCNGC 5 cut(s) 37, 40, 504, 609, 1224
GsaI CCCAGC 1 cut(s) 1437
HaeIII GGCC 4 cut(s) 503, 1136, 1275, 1542
HapII CCGG 2 cut(s) 548, 758
HgaI GACGC 2 cut(s) 203, 305
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 3 cut(s) 173, 791, 1776
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HpaII CCGG 2 cut(s) 548, 758
HphI GGTGA 5 cut(s) 442, 448, 508, 556, 1142
Hpy166II GTNNAC 4 cut(s) 103, 1402, 1503, 1569
Hpy188I TCNGA 7 cut(s) 596, 733, 1050, 1083, 1258, 1628, 1793
Hpy188III TCNNGA 9 cut(s) 256, 335, 484, 625, 758, 863, 1151, 1178, 1676
Hpy8I GTNNAC 4 cut(s) 103, 1402, 1503, 1569
HpyAV CCTTC 7 cut(s) 181, 463, 629, 886, 902, 1412, 1573
HpyCH4III ACNGT 6 cut(s) 292, 686, 934, 1007, 1112, 1753
HpyCH4IV ACGT 3 cut(s) 444, 1499, 1505
HpyCH4V TGCA 9 cut(s) 36, 588, 693, 716, 798, 1264, 1428, 1451, 1709
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 220, 804
HpyF3I CTNAG 5 cut(s) 498, 543, 623, 730, 1358
HpySE526I ACGT 3 cut(s) 444, 1499, 1505
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 3 cut(s) 173, 791, 1776
Kpn2I TCCGGA 1 cut(s) 757
Kzo9I GATC 3 cut(s) 591, 1045, 1756
LmnI GCTCC 3 cut(s) 760, 1070, 1168
Lsp1109I GCAGC 3 cut(s) 48, 51, 1235
LweI GCATC 6 cut(s) 169, 635, 703, 1492, 1696, 1718
MaeI CTAG 1 cut(s) 1349
MaeII ACGT 3 cut(s) 444, 1499, 1505
MaeIII GTNAC 5 cut(s) 556, 668, 766, 1001, 1322
MalI GATC 3 cut(s) 593, 1047, 1758
MboI GATC 3 cut(s) 591, 1045, 1756
MflI RGATCY 1 cut(s) 1756
MhlI GDGCHC 1 cut(s) 1067
MlsI TGGCCA 1 cut(s) 1275
MluCI AATT 9 cut(s) 416, 425, 510, 617, 783, 985, 1352, 1562, 1620
MluNI TGGCCA 1 cut(s) 1275
MlyI GAGTC 3 cut(s) 73, 253, 856
MmeI TCCRAC 1 cut(s) 1362
Mox20I TGGCCA 1 cut(s) 1275
Mph1103I ATGCAT 1 cut(s) 1711
MroI TCCGGA 1 cut(s) 757
MroXI GAANNNNTTC 3 cut(s) 191, 204, 725
MscI TGGCCA 1 cut(s) 1275
MseI TTAA 6 cut(s) 351, 782, 1074, 1311, 1547, 1779
MslI CAYNNNNRTG 2 cut(s) 168, 521
Msp20I TGGCCA 1 cut(s) 1275
MspI CCGG 2 cut(s) 548, 758
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 211, 220, 804
NdeII GATC 3 cut(s) 591, 1045, 1756
NlaIII CATG 3 cut(s) 173, 791, 1776
NlaIV GGNNCC 1 cut(s) 1066
NsiI ATGCAT 1 cut(s) 1711
NspV TTCGAA 1 cut(s) 7
PceI AGGCCT 1 cut(s) 1542
PdmI GAANNNNTTC 3 cut(s) 191, 204, 725
PfeI GAWTC 7 cut(s) 4, 382, 487, 949, 1445, 1519, 1784
PkrI GCNGC 5 cut(s) 38, 41, 505, 610, 1225
PleI GAGTC 3 cut(s) 73, 253, 855
PpsI GAGTC 3 cut(s) 73, 253, 855
Ppu21I YACGTR 1 cut(s) 1500
PsiI TTATAA 2 cut(s) 1194, 1299
PspFI CCCAGC 1 cut(s) 1433
PspN4I GGNNCC 1 cut(s) 1066
PsuI RGATCY 1 cut(s) 1756
RsaI GTAC 2 cut(s) 1594, 1609
RsaNI GTAC 2 cut(s) 1593, 1608
RseI CAYNNNNRTG 2 cut(s) 168, 521
SaqAI TTAA 6 cut(s) 351, 782, 1074, 1311, 1547, 1779
SatI GCNGC 5 cut(s) 37, 40, 504, 609, 1224
Sau3AI GATC 3 cut(s) 591, 1045, 1756
SchI GAGTC 3 cut(s) 73, 253, 856
SduI GDGCHC 1 cut(s) 1067
SfaNI GCATC 6 cut(s) 169, 635, 703, 1492, 1696, 1718
SfcI CTRYAG 1 cut(s) 1662
SfuI TTCGAA 1 cut(s) 7
SmiMI CAYNNNNRTG 2 cut(s) 168, 521
SmlI CTYRAG 2 cut(s) 482, 1685
SmoI CTYRAG 2 cut(s) 482, 1685
Sse9I AATT 9 cut(s) 416, 425, 510, 617, 783, 985, 1352, 1562, 1620
SseBI AGGCCT 1 cut(s) 1542
SsiI CCGC 3 cut(s) 504, 608, 1703
SspI AATATT 2 cut(s) 1303, 1393
SspMI CTAG 1 cut(s) 1349
StuI AGGCCT 1 cut(s) 1542
StyI CCWWGG 1 cut(s) 1068
TaaI ACNGT 6 cut(s) 292, 686, 934, 1007, 1112, 1753
TaiI ACGT 3 cut(s) 447, 1502, 1508
TaqI TCGA 4 cut(s) 7, 195, 325, 963
TasI AATT 9 cut(s) 416, 425, 510, 617, 783, 985, 1352, 1562, 1620
TatI WGTACW 1 cut(s) 1592
TauI GCSGC 2 cut(s) 506, 611
TfiI GAWTC 7 cut(s) 4, 382, 487, 949, 1445, 1519, 1784
Tru1I TTAA 6 cut(s) 351, 782, 1074, 1311, 1547, 1779
Tru9I TTAA 6 cut(s) 351, 782, 1074, 1311, 1547, 1779
TscAI CASTG 2 cut(s) 610, 815
TseI GCWGC 3 cut(s) 36, 39, 1223
TspDTI ATGAA 8 cut(s) 113, 213, 734, 776, 852, 1010, 1592, 1652
TspGWI ACGGA 1 cut(s) 1119
TspRI CASTG 2 cut(s) 610, 815
XapI RAATTY 1 cut(s) 510
XmnI GAANNNNTTC 3 cut(s) 191, 204, 725
XspI CTAG 1 cut(s) 1349
ZraI GACGTC 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 1711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.