RLG00000013350

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006957
Physical Location & Seq
Forward (+)
30203806 .. 30205175
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013350

Sequence Viewer

Length: 372 bp
ATGACTCATTGTGGTTGGAACTCTATCCTTGAAGGAGTGGCTGCTGGGGTGCCAATGATCACCTGGCCAATGTCCGCAGAGCAGGTCTACAATGAGAAGTTGGTGACTCAGTTGCTTGGGATTGGGGTTGCTGTTGGGGCTAAAAAGTGGGATACATTTGAGGATAATAGTCTGAAAAGCAAAGCCAGCGTGAAGATGGATGCCATAGAGAAGGCTGTGGCTGAAATCATGGTGGATGATGAAGCAGAGGAAATGAGAAGTAGAGTTAAAGAGCTTGGAGAGATAGGAAGCAAGGCTATTGAAGAAGGCAGTTCATCGTTCTCCTATTTAACTGCTCTTATTGAAGAGTTGAGAGTCCCTAGATGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

124

Amino Acids

13.44

Weight (kDa)

4.73

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 1 - 37 2.1e-07 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 87
AciI CCGC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 65
AgsI TTSAA 3 cut(s) 32, 302, 344
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 52, 115
BalI TGGCCA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 64
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 1 cut(s) 57
BfaI CTAG 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 73
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 190
BseBI CCWGG 1 cut(s) 64
BseGI GGATG 2 cut(s) 205, 241
BseMII CTCAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 44
BshFI GGCC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 49
BslFI GGGAC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 51
BspMI ACCTGC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 49
BssMI GATC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 205, 241
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 137, 186
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 28
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 205, 241
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 187
CviAII CATG 1 cut(s) 229
CviJI RGCY 8 cut(s) 41, 67, 140, 185, 215, 221, 274, 296
CviKI_1 RGCY 8 cut(s) 41, 67, 140, 185, 215, 221, 274, 296
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 62
FaeI CATG 1 cut(s) 232
FaiI YATR 2 cut(s) 206, 230
FaqI GGGAC 1 cut(s) 341
FatI CATG 1 cut(s) 228
FbaI TGATCA 1 cut(s) 57
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 212, 248
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 360
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 67
Hin1II CATG 1 cut(s) 232
HinfI GANTC 3 cut(s) 4, 106, 354
HphI GGTGA 2 cut(s) 52, 115
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 174
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 26, 205, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 186
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 1 cut(s) 57
LpnPI CCDG 5 cut(s) 30, 49, 68, 76, 199
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 3 cut(s) 205, 314, 356
MlsI TGGCCA 1 cut(s) 67
MluNI TGGCCA 1 cut(s) 67
MlyI GAGTC 2 cut(s) 100, 363
MnlI CCTC 2 cut(s) 154, 241
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
MseI TTAA 2 cut(s) 267, 329
Msp20I TGGCCA 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 137, 186
NdeII GATC 1 cut(s) 57
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 2 cut(s) 100, 362
PpsI GAGTC 2 cut(s) 100, 362
Psp6I CCWGG 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 267, 329
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 2 cut(s) 100, 363
ScrFI CCNGG 1 cut(s) 64
SetI ASST 3 cut(s) 65, 87, 276
SfaNI GCATC 1 cut(s) 190
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 62
Tru1I TTAA 2 cut(s) 267, 329
Tru9I TTAA 2 cut(s) 267, 329
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 255, 303
XcmI CCANNNNNNNNNTGG 2 cut(s) 60, 193
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.